mRNA_L-elsbetiae_contig5610.13947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5610.13947.1
Unique NamemRNA_L-elsbetiae_contig5610.13947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A6H5KZY7_9PHAE (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.230e-48
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 ACMQMEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAYRTG 315
            A   ME+I+LDYDE+SV+TTYDQT+D K VFKGVEGAR LF GLF+ALSD SDLAAPVIDV E S ++FLVWRCPASGFLDATDTF  + +T KI RQNVAY+TG
Sbjct:   71 AAHDMERILLDYDEDSVVTTYDQTADKKTVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 175          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: D7G623_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G623_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.200e-47
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    1 ACMQMEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAYRTG 315
            A   M++I+LDYDE+SV+TTYDQT+D   VFKGVEGAR LF GLF+ALSD SDLAAPVIDV E S ++FLVWRCPASGFLDATDTF  + +T KI RQNVAY+TG
Sbjct:   20 AAHDMDRILLDYDEDSVVTTYDQTADRISVFKGVEGARTLFEGLFEALSDQSDLAAPVIDVSEESNMVFLVWRCPASGFLDATDTFTHNDKTKKISRQNVAYKTG 124          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A812KSN4_9DINO (CasB protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KSN4_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 1.370e-23
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAYRTG 315
            ++KIMLDYD+ S+   Y+    +K  F G    RN+F  LF  LS+   L APV+DVDEA K +FLVW CP  G+  ATDTF V G  NKI RQN+    G
Sbjct:   54 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTF-VFGPDNKIKRQNIVVTKG 153          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A8J2SYK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYK6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.880e-23
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASK----VIFLVWRCPASGFLDATDTFLVDGETNKIYRQNV 300
            ++K++ DY E SVI  Y+Q +D    FKG++G +  F GLFK LSD S LAAP I V+EA++    ++FLVWRCP+SG+  ATDTFL D    KI +QNV
Sbjct:  155 VDKVLKDYTEKSVIKVYNQVTDELVEFKGLKGVKECFTGLFKDLSDLSGLAAPAIRVEEATEDKAGMVFLVWRCPSSGYNHATDTFLFDA-AGKIAKQNV 253          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A812STE6_9DINO (CasB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812STE6_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 3.060e-23
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAYRTG 315
            ++KIMLDYD+ SV   Y+    +K  F G    RN+F  LF  LS+   L APV+DVDEA K +FLVW CP SG+   TDTF V G  NKI RQN+    G
Sbjct:  100 LDKIMLDYDDTSVAKVYNNKDGSKSEFVGRVQIRNMFTNLFSDLSNLDTLKAPVVDVDEAGKTVFLVWECPGSGYHFGTDTF-VFGPDNKIKRQNIVVTKG 199          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A812Z7R4_9DINO (CasB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Z7R4_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 3.860e-23
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAYRTG 315
            ++KIMLDYD+ S+   Y+    +K  F G    RN+F  LF  LS+   L APV+DVDEA K +FLVW CP  G+  ATDTF V G  NKI RQN+    G
Sbjct:   97 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLETLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTF-VFGPDNKIKRQNIVVTKG 196          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A813B714_SYMMI (CasB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B714_SYMMI)

HSP 1 Score: 96.7 bits (239), Expect = 2.230e-21
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNV 300
            ++KIMLDYD+ S+   Y+    +K  F G    RN+F  LF  LS+   L APV+DVDEA K +FLVW CP  G+  ATDTF V G  NKI RQN+
Sbjct:  107 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTF-VFGPDNKIKRQNI 201          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A1Q9EQB8_SYMMI (Metacaspase-1B n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EQB8_SYMMI)

HSP 1 Score: 96.7 bits (239), Expect = 3.980e-21
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPSDLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNV 300
            ++KIMLDYD+ S+   Y+    +K  F G    RN+F  LF  LS+   L APV+DVDEA K +FLVW CP  G+  ATDTF V G  NKI RQN+
Sbjct:   97 LDKIMLDYDDTSIAKVYNNKDGSKSEFVGKVQIRNMFTDLFADLSNLDTLKAPVVDVDEAGKTVFLVWECPGCGYHTATDTF-VFGPDNKIKRQNI 191          
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Match: A0A6T7BC46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7BC46_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.190e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   13 MEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSD 150
            ++KIMLDYDE SV+  +  +    + FKGVE  R  F GLFK L+D
Sbjct:   56 LDKIMLDYDEKSVLRCFCHSDGADDTFKGVEEIRGFFDGLFKMLTD 101          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5610.13947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KZY7_9PHAE3.230e-4874.29SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
D7G623_ECTSI2.200e-4772.38SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A812KSN4_9DINO1.370e-2349.50CasB protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A8J2SYK6_9STRA2.880e-2352.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A812STE6_9DINO3.060e-2350.50CasB protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812Z7R4_9DINO3.860e-2349.50CasB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A813B714_SYMMI2.230e-2151.04CasB protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A1Q9EQB8_SYMMI3.980e-2151.04Metacaspase-1B n=1 Tax=Symbiodinium microadriaticu... [more]
A0A6T7BC46_9STRA4.190e-550.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5610contigL-elsbetiae_contig5610:6328..7330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog227086.JGI_V11_85307
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061,ko:K14515,ko:K18272
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,ko04016,ko04075,map00361,map00364,map00623,map01100,map01110,map01120,map01130,map04016,map04075
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
EC3.1.1.45
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Ec32 ortholog descriptionPolyketide cyclase SnoaL-like domain
Ec32 orthologEc-11_004820.1
Exons2
Model size318
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5610.13947.1prot_L-elsbetiae_contig5610.13947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5610 6328..7324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.3574746-CDS-L-elsbetiae_contig5610:6327..65401622816596.3574746-CDS-L-elsbetiae_contig5610:6327..6540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5610 6328..6540 -
1691683673.1618416-CDS-L-elsbetiae_contig5610:6327..65401691683673.1618416-CDS-L-elsbetiae_contig5610:6327..6540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5610 6328..6540 -
1622816596.3700588-CDS-L-elsbetiae_contig5610:7225..73241622816596.3700588-CDS-L-elsbetiae_contig5610:7225..7324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5610 7226..7324 -
1691683673.1792347-CDS-L-elsbetiae_contig5610:7225..73241691683673.1792347-CDS-L-elsbetiae_contig5610:7225..7324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5610 7226..7324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.3828754-UTR-L-elsbetiae_contig5610:7324..73301622816596.3828754-UTR-L-elsbetiae_contig5610:7324..7330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5610 7325..7330 -
1691683673.1885664-UTR-L-elsbetiae_contig5610:7324..73301691683673.1885664-UTR-L-elsbetiae_contig5610:7324..7330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5610 7325..7330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5610.13947.1

>prot_L-elsbetiae_contig5610.13947.1 ID=prot_L-elsbetiae_contig5610.13947.1|Name=mRNA_L-elsbetiae_contig5610.13947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MQMEKIMLDYDENSVITTYDQTSDNKEVFKGVEGARNLFGGLFKALSDPS
DLAAPVIDVDEASKVIFLVWRCPASGFLDATDTFLVDGETNKIYRQNVAY
RTG*
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mRNA from alignment at L-elsbetiae_contig5610:6328..7330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5610.13947.1 ID=mRNA_L-elsbetiae_contig5610.13947.1|Name=mRNA_L-elsbetiae_contig5610.13947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1003bp|location=Sequence derived from alignment at L-elsbetiae_contig5610:6328..7330- (Laminarionema elsbetiae ELsaHSoW15)
GCTTGCATGCAGATGGAGAAGATCATGTTGGACTACGACGAGAACAGCGT GATCACAACCTACGACCAGACGTCCGACAATAAAGAAGTCTTCAAAGGGG TAGAGGTAGCCGCGCTTTCACCAATTTCTCGGTTGCACTTGTACGCACAT TTGAGCTGAGTGTGTTTTCGCGGACCTACAGGAAAGGTCGGGCGGGGCTT TGCACCTGGCGTTATCACAGGAACCTCAGATCGGTTCTCAGGGCTCGCGG TTTTGCGTAGACTACGTAGCAATATATTCGGCCGGCAAGAGAGCAGCGTT CAGGTGGTCTAGACTTGAGGCAAAAAACTCAATGTTTCTCTCTGTGCACA CCGGATTTGATATGTAGTCTATGTTTTGACACCGAATTAATGCTGCGCGT GACTACCGTAAATCATGCGAGTCATCGCACCCCCCCCGCATCGATTTTCA AAGTTCGATTACTCCTCAACGTACAGGGTACCAACACCAAACAGCACGTT CGTTCGACAGCCCTCGGCGTGATCGTCCCAATGCCACCCTTTTCGGTGCC GGCCTCCCCTATCGAGCTTTGAAAATCGATGCGGGGGGGTGCGATGACTC GCATGATTACGGTAGTATGTACTGACTGTGTTTGGCCAGACCAACGAAAC AACTCGTGTCCGCCTTATGTATGTACCGACCGCATTTTCTCAGCACCCCC CCCCCCGCCCCGCCCCGCCCCCAACCCCCACACTACGTTGCATTCTGTGC TGCATTCCTTCCTTTCATCAAAACTTACTTACACGCACAGGGAGCTCGTA ACCTTTTCGGGGGTCTTTTTAAGGCACTGTCCGACCCGAGTGACCTGGCG GCACCGGTGATCGACGTGGACGAGGCGTCGAAGGTGATTTTCCTCGTCTG GAGGTGCCCGGCCTCCGGCTTCCTGGACGCCACGGACACCTTCCTGGTCG ATGGCGAGACCAACAAAATCTACCGCCAGAACGTGGCCTACAGGACTGGC TGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5610:6328..7330-

>mRNA_L-elsbetiae_contig5610.13947.1 ID=mRNA_L-elsbetiae_contig5610.13947.1|Name=mRNA_L-elsbetiae_contig5610.13947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5610:6328..7330- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGATGGAGAAGATCATGTTGGACTACGACGAGAACAGCGTGATCAC
AACCTACGACCAGACGTCCGACAATAAAGAAGTCTTCAAAGGGGTAGAGA
TGCAGATGGAGAAGATCATGTTGGACTACGACGAGAACAGCGTGATCACA
ACCTACGACCAGACGTCCGACAATAAAGAAGTCTTCAAAGGGGTAGAGGG
AGCTCGTAACCTTTTCGGGGGTCTTTTTAAGGCACTGTCCGACCCGAGTG
ACCTGGCGGCACCGGTGATCGACGTGGACGAGGCGTCGAAGGTGATTTTC
CTCGTCTGGAGGTGCCCGGCCTCCGGCTTCCTGGACGCCACGGACACCTT
CCTGGTCGATGGCGAGACCAACAAAATCTACCGCCAGAACGTGGCCTACA
GGACTGGCTGAGGAGCTCGTAACCTTTTCGGGGGTCTTTTTAAGGCACTG
TCCGACCCGAGTGACCTGGCGGCACCGGTGATCGACGTGGACGAGGCGTC
GAAGGTGATTTTCCTCGTCTGGAGGTGCCCGGCCTCCGGCTTCCTGGACG
CCACGGACACCTTCCTGGTCGATGGCGAGACCAACAAAATCTACCGCCAG
AACGTGGCCTACAGGACTGGCTGA
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