mRNA_L-elsbetiae_contig5607.13941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5607.13941.1
Unique NamemRNA_L-elsbetiae_contig5607.13941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5607.13941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5607contigL-elsbetiae_contig5607:2610..10690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size383
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5607.13941.1prot_L-elsbetiae_contig5607.13941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5607 2610..10644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.7851248-CDS-L-elsbetiae_contig5607:2609..27411622816595.7851248-CDS-L-elsbetiae_contig5607:2609..2741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5607 2610..2741 -
1691683672.8131835-CDS-L-elsbetiae_contig5607:2609..27411691683672.8131835-CDS-L-elsbetiae_contig5607:2609..2741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5607 2610..2741 -
1622816595.7965622-CDS-L-elsbetiae_contig5607:10440..106441622816595.7965622-CDS-L-elsbetiae_contig5607:10440..10644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5607 10441..10644 -
1691683672.8248796-CDS-L-elsbetiae_contig5607:10440..106441691683672.8248796-CDS-L-elsbetiae_contig5607:10440..10644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5607 10441..10644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.8095741-UTR-L-elsbetiae_contig5607:10644..106901622816595.8095741-UTR-L-elsbetiae_contig5607:10644..10690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5607 10645..10690 -
1691683672.8347995-UTR-L-elsbetiae_contig5607:10644..106901691683672.8347995-UTR-L-elsbetiae_contig5607:10644..10690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5607 10645..10690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5607.13941.1

>prot_L-elsbetiae_contig5607.13941.1 ID=prot_L-elsbetiae_contig5607.13941.1|Name=mRNA_L-elsbetiae_contig5607.13941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MVLPRRRCLCLALATGLLHDHRCAHAFGVVSAGLAGRSVMRPSVTRVGST
VEIERRNGVVGTTWTGPEALLPDTETILLETTTAAAVAVADPPADTRPRP
PPPVAPPAPPAA
back to top

mRNA from alignment at L-elsbetiae_contig5607:2610..10690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5607.13941.1 ID=mRNA_L-elsbetiae_contig5607.13941.1|Name=mRNA_L-elsbetiae_contig5607.13941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8081bp|location=Sequence derived from alignment at L-elsbetiae_contig5607:2610..10690- (Laminarionema elsbetiae ELsaHSoW15)
GGGAGAGAGAGGCAGAGAGAAAAGATAATCTTGGGCATTACACAACATGG
TGCTTCCCAGGAGGAGATGTCTGTGCCTAGCGCTAGCTACTGGTCTTCTT
CACGACCATCGATGCGCCCACGCTTTCGGAGTTGTTTCGGCAGGGCTCGC
TGGACGATCTGTGATGAGACCAAGCGTCACCCGTGTAGGCTCGACGGTGG
AGATTGAGCGAAGGAATGGCGTGGTGGGCACGACATGGACGGGCCCTGAG
GTGAGGAGGCCTATCTAATGCACTGCTGTAGAGTCGAAAACGCGTGCAGA
CATGCAGACTACGTGTCATTTGTTCTGATATGCACAGCAGCATGTAGTAC
GTACGCAGTCGCCTTCGGTGCCGCGGGGAGCGACCACACTGGCTACGCTC
ATTGGGAGGCGAGGGGGTCGTGGTGCACGCTTCCATCGTGTGACATAGAG
GAGGACCCCGAGGGAGCTCGCAGGTGTAGAGAAACAGAACCGCGGCGCAG
CTAGTACTATCTTTGTATTTAATATTTAAACGCCGAAATGGTTGCAGAAG
GGCCGCACTAGCCGCACAGCTATCGGAGAAAAGTTCCAGGGCACAACAGC
AGGTATTTTGTATTTTGTATGGTTTGTATATTGCCAGCACTTGTTACACT
AGACTACTGCGGATACTGCTTTAGTCTACCGTCTGGATGGGGCAAAGTCT
TGATATGCGTTCTACCGGTAGATAGATAGTCTACATCATGCAGGCCGCGC
CCGCTGACAATTGATGCTGGGCGCCTCGAAAAACTCGAAGAAATCTGGAC
TAAAACACACCTCAATCATGGATCCTACACTAAACCCTATACAAACCCCT
ACGCTCGACAGTAGTGGCGACGAAATAAGAAATAGTCTAGAGCCTCACCC
CTAAGATATTTCATGTTTCTTGTCAGCGGGCGCTGTCCTCATGTACACAT
GTATACCGTAAAAGCCTTTGAGTTATTACCGTGGGTGACATAAGATAAGA
CACCCCCTGGACCGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGC
GTCAGTCCAGAAAAGGGCGGCGTTGGAAAGATCTCGTCTAGAGAGAGCTT
TCCGACAATGTGGCGTTTGTGGTTAGAATCGTAACCGTTGCGGAGTAACC
AAGCTTTCGATATCGGTCCAGGGGGTGTCTTATCTTTTGTCACCTACGGT
ATGTTATTACAAGAGCTTCGGACGCGGGGGCCTACCGCTCCCCGTCCTTC
GGTTTCTGATAGTCAATATGGGAGGGTTCAATAATGTGTGGTCACCCAGG
TTAACAAGGGTAACATTGGTGAGAGGAACAGGAAGTTTTTGGGTCAAAAA
GAAGCCCCGAGGTGATCTCACCGGGAGGGGGGGGTCTTTTCGCAAATAAA
TAATAACCCGGGGGGGGGGGGGGGCTCCGGGGGGAGACATTCCTCTTTTC
ACACATCCNNNNNNNNNNCGGAGTTGGCTGCGGCGGGGGGTAGTGGTGGT
TGTCGCAAAGAAGCTCTCTGCGCGGGGGGGGGGGGGAGCTCCGGGGGTAG
AACTCTCTCTTTTCACACATCCACACATCCACACACCCGCTGACCATGTC
GGGCCTCGGCGGAGCTTACGAGGGCAATTTTCGTTTTTATGTAAATCTCC
CCGTGGCCAACAGCTTCAGAAGAAGCTCAAGAAGACCAGTCACTGGGGAA
GCTGTCTTCACTTGACTGTTTGAAGGTCTTCCAGCCTTCCGGACATTACT
TGCGATACATGACAGGATACGCGATGCGAGATATTTCTTGTGCTTTCTGC
TCGCGGGTACCGTAGTCCATGTAGCTGTTCGCTAGCAATGGACGAGAGCA
AGACGGTAACGTCATGTTTGTGGATCTTTCGGGGTCTATCGTAATCAAGT
TGTTGCGCAGAGGCGTTGATCTGTAGCAGTACCGATGGGATGGCGGGAAG
ACAGAATGCATGAAATAATAGTAACATGAACCGGGAGACCTTTGAAAGTG
CGATTGTCGGACGGCAACCGAAAGACTGCGTAGTAATGCAACAACAACCG
GTAGCAGCATGTAACACAACCTTTGGTGGTAACACGCAACAACGAGTTGC
CAGAATAAATGCCGTCACGCGCGGGGGCACGCCCCAAAAAACAGTTCAAT
AAAGAAACCCCCGGGGGTAACTCAAAGATAGAGGGGGGGAAAGTTCAACA
AACAAAAAAACGCCCCGGGGCTAACTCAAAAGTATTTGTGATCGCAAAGT
GGTTAAACCCCGGTAGGGGGTGCTAACCGTATCGGGGGGCTAACTCAAAG
GGGTTTACGGTTTGTATGTATGTATGTATGTATGTACGTTATCTTGAATG
TAAACTCCTACACAGGCGGCGCGTCAAGCCTCTGAAGTAAGCCGCCGGTG
TTCATCCTAGAGCCGGGCAATACAGCTATTTTTGGTTTCCACTTTCACGA
AATTTGCCTTGTGCTAACCTTCTCCCCCGCACGAGGGGACGGGGGGGGGG
AGGAGATTTCCCCCTCCCTTCCCTTGTCCTGGGCAAAAACGCACTAAGGA
GGAAACAGCTGACCTTCAAAGGGTCCGGTCGCTTTCCCCCCCCGGACAGT
CACCTCTCCCCTCTAGAAAAAAGTAACTGCTCTCTCCCCCTCGTGTTCTC
ATTCACGCTCCGCGGGAGCGTGGGCGGGGAGATAAAAATTGGCTCCGAGT
ACTCCACGGCCTGCGCTCCGCTCTAGGCGGTTCCGTGCAAATATCTCGGC
CTGCTCCAACTTGGCAACATACTAGTGAATGGTTCTGCTATGATGGGCCT
GCTCCATCTCAGACGGTTCCTCATACTTCAGTCTCCTCCATCCCTAGTAT
CTAGTATCTAAAGGACGGGTTCCGTATCACGGCCTCCACCCAAAAGGATG
GTTCCGTTTGATACAGCCTCCTCCCACCCTTGCCAACAGGACCGAAAACA
GTTCCTTAGACCTGTGCGGGCCTGGCCGGCGAGAACCCGGCGCGGAACCC
CCCGGCTTTATTTGGGTACCAAGATAGTGGTGTTGACCAAGATAGTGGTG
TTGGCTGCTCCAGTTTTGTTTTTACCTCACACAGCGTGTAGAGGGGATCG
GAGGGCTCCAGATTCGATGTCTGTTTTATTGTTGCTTTGCTTGCCCTTCG
GGTCCATTTTATTTTTCGTGTACCTTTTCTTTGGTATAAGTTAGCCTGTG
ACCACGGGAATTGACCGCATCAAGTGTTGGATTAGTACGGACATTGAGAG
GTACTGGAAGGAGAGATTGGAACGGTTTTTAATGTGAAGACAACATACGT
ACATAGTGCCGGCCTGCTCCATCCTCAGACGTTCCGAGCACTATGGCCTC
CTCCATTTTCGGCCCCCCTTCAGGCCGGCTCCAATACTCCACGGCCTGCT
CCGCTCTACAAAAACGGTTCCGTGTTTCTCAGCCTGCTCCAACCTTGTCA
ACATACCAGTGAAAGGTTCCGTTGTATGGGCCTGCTCCGTCTAAGACGGT
TCCTCATACTACGACCTCCTCCATCCCTAGTATCTAAAGGACAGGTTTCG
TATCACGGCCTCCTCCACCATATTCGATGGTTCCGTTGAGACGGCCTCCT
CCCACCCTGGTCAACAGGACCGAAAACGGTTCCTCAGTGCCGGCCTCCTC
CATTTCAGCCCCACTACATATGGTTCTGAATACTCCTTTTGTGCCAGCGA
GACGCAAGGTCCCCTCGGGGCTCAGTTTAGTACCGCCGGGCGCGTATGTG
CCATACTTGTGTTTGTTTTATTTATTTCTTCAGCGGCGTCGAGTGTGCCC
TGTTTTGTGACCACGCCCCCCCCCCAAGGAAGTTTTGGACTAGAGAACTA
ACGTGAGAAACAACAACAACTCCACGGCCTGCTCCGTCCTAAACGGTTCC
GTGTTTCTCAGCCTGCTCCAACCTTGGCAAGAACTTCACGTGCAAACCTG
CTCAAGCCGTGGCAAGCAAAACAGGACGTCAACCCAAAACCCAAGCAGAA
AACACAATAAAAATTAAAGGATGGGTGGGCGGGCCGGCAAAACAAATTAA
AACCTGTGTAAAACCTGTGTAAAGCACGGGGGCAACGTCCGTAGAGCAGT
TCAGCCCAGATAACCACACCAACCACCACCCGAACCCCTGGCCTTCCTTC
CACCGACAGCGCGAAAATTGCTCTCTTCACACCCTGTCAACTGCTGTGCA
CACCAGCCCGCACGGGACTGCCCCCTGTGCCCCCACCGCGGTCGCCCGTC
ACCTCGTGTTGCGCCCTGTAGTTCTGGCTCCCAATCCCCCGCCCTCCCTT
TGACCTCCGGCTTTTGAAGCACTTGTCCTCCGGCTTGAAACCCTGCCGAC
TGCGGGCAGCTTCCTCACTACGAAGCGGACAACGAAAGATAACCGAGCAA
ACGTGTGCCTCCTCCTCGCCCTCCTCCCGGCCCTTCGCAGGTGGGTCTAC
ACTCCTCGCTGATGCTCCTCCTTCCGTCTTTCTTCTTCATCTACTGCTTG
CTCTCTCCTTGCTCTGGTGTATTTTTCACATGTGAACCTGTGCTGCCGGC
TCTTCTTCCAAGAACCGTTCCCGTGCAACGTTCCGAGTATCTGAAACTCC
GTCTCTTTTCCACCAAAACACCGGGTTGTACTCATCCTACAAAAAACCCC
GTACGACCTTTTACGTATAGAAGTTTTATACATTATATTTTGTTTCTCAG
CTCGTTATTCCAAGAAAATTCTTCGGGCTCCCGCACGCGCTCTGTCAGGC
CATGTCACTTGTTCACTTGAATTTAGACAGGAGATTATGGGGTCTCAAAG
CTCCCGATACCTGACGTGCCAGTACACGCATTTCGGGCTCTCGCACGCGC
TCTGTCAGGCCATGTCGCTTGTTCACTTGAATTTAGACAGGAGATTCTGG
GATCTCAAAGCTCCCGATGCCTGACGTGCCAGTACACGCATGCGTTCGTT
TTTCGTGATTTTTCAACGGGAGAGCGTTTCGATCGGTCGGGGTTGCTCCA
TGTTGCTCTTTACTCCAAGCCCATTGCCCTCTGTACCTCTCTCTTTCTCT
CTCTCTCTCTCTCTCTCTTCTCTTCTCCGGCTGCATGTCGCTGGGCGACG
CATTCCGCCTCTCGCTTGCTGTATGTGGCCCGAACGCGCCGGACGCGCGG
CGTCATACGCGTGCATTTATCCACATGCGTTAATTTCCCGGTTCTAGGGA
GGTCGTTTCGATCGATCAGGGTTGCTCCGCGGTACCCTCCACCTCGAGAC
CATTGCTCTCTGTATCTCTCTTTGGCTATACCTATCTCTCTTTTTCTCTC
TTTCGCTGGGGTGACTGACATCTGTCTCGCTGGCTCTATCATAAGTTCCA
AGAGGCGAGATCGGGTTGTTGCGTGAGTCGTGGTGGAGTTTCATTCGACG
GCAGGTTACTTCACTCCCAGCTCATCGTGTGCTCTCTACGTCTCTGTGTG
TGTCATATTGCCTTCTTTTCTCTGAGCAGTTTACTTCACTCCCAGCCGAT
CGTTCTCTACGTCTCTGTGTGTGGCATGTTGCCTTCTCTTCTCTGTTCTC
TGTTCCTTTTGCCCCGGGTGGGTTACGGTTAATTGAGAGGAATGCGGTTC
TTTTTCAGCAGCTTGCTCCGTTCAATGTGCGTCCATGGTCCATACTTGAT
GAGCGGTTTATTTGTTGTGTACGTTACCCGGAGTTGTTACGTTGCTGTTG
TCTTCCCAAGTATACACATTTCTCACGCACGCACGCACGGAGGTTATTGT
TTAGATCTGTATGCGGAAGCTTTCGTCTTTCAGATGACGGGCAAATAGGA
ATGCGGTGATTTCGTGCAGCTCCGTTCGAAATGTGCATGGCATGTATGTA
CATGACCGGTTCGTTGTTTGGTGCAGCTTGGCGGCATCACCTGCTCTTTC
GTGTACACGTAGCTAGCTTCCCCGTCGGCCGGGTAGGATATATATATTTT
TTTCCAACTTATTCAGCTGCAAAAAACTATTATCTTGAAACTCGGTCGCG
GGAGAGGAGGGCGCATAAACCTAAACCTGTCGGCGCCGGGTCGCGCGCCC
CGCGCGGGGGGGTACGGGGAGACGTGGCGGCGAGCGTGGAGACCTGGCGG
TGCCAACCGCGTGCGTGCGTGCGTGCTTGCTTGCTCAGAGAGACACAAAT
CAGCATGTCTTTTATTACCTGCGAGATTTTTTGTTTTGGTCCTATTCTTT
ACAAAACGGATGCAGCAGTGCCAGGCCCGCTACACAGTCAGAAAGCTTCG
AGTAAGAAACTTAGCCTGAGATTTTCAAATTATTAAGAAAATGAAAGTGT
CCGGCCTCGCTTAGTTTTAGACCTGGATGGCCATATGGTGACAATTTGGC
GACAGGCCTGGTATCAACGCTTTTCCCCCTAGAGGGAGAACTTCTGTGTA
GCCAAGGCCTGGAAAAAATATTATCTTGGCTTTCAGTATAGAAAGTGTCG
CCAAAAGTTTGATTTGGCCTTGAGTACGGAAACTGTCGCCATTTTTTTAC
TTTTCGATTTTCTCTCTGTTGTGTGCACGGAACCTTGTGTAACCATGGTT
TACGTTCCTCCTGCATCTGTGGGATAGCGATGCACCCTCTTGTTTCACCC
CAGACACTCTGCTGGCGGGTCCGGCAAGCCCGGGTAGAACGCGGGGCCCG
CAGATGGGTTCTAGAAGGGACCGTGGCTCTTTAGCCTATCACAGGCGGCC
AGATTATAGGCGGGTTCTAAAAGGATTAAGGGCGGCGAGTGAGTTGCACA
TTAATTAAATCCTATAGATACATCACATAATAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGGAGTTCTGCTCGAATTTCAACCCAACATAAAAAAAG
TCAGTCTGGGCCCGATTTCAGGTTTCTTGCCAGCGGGCCGTGTCCAGCCT
CACTTAAGGACGGCGAGTGAGTGGCACATTAATTAAATCCTATAGATACA
TTACATAATAATAAGACAGAGTTCTGCTCGACTTCCAACCCAACATCAAA
AAATCAGCCTGAGCCCGATTTCAGGTTTCTTACCAGCGGACCGGTACCGC
TGTACATACCCACAACGTTTACCAGCGTTTCGAAATCCACGTCTTGCTCC
CTCCGTCCAGCTCGAGTTGGCGGTGTTTTGCATGCATGTCCGCTTGCGTG
CGGACGAACCAGATGGCCTCCCTCGTGCGCGGTTTCTACATCCAAGAGGT
GACCCAGGTTGTCTCTGGCTTCGAACACCTAACCCAACCCAACCCAACCC
AACCCTGCGAAACTAGTCAGTCTGGTGTAGTCGAAGCGAACCCGGTGTAG
TCGAAGCTCTGACCCAACCCACCCCGGTGCCCTGCACACCCAACCCAACC
CAACCCAACTCAACTCAACCTTACGAGACCGGGAGGGTGAATACGAGCTC
ACAAACGAAGAAGTCAGAGCAAGGGTCTTGTCTTGGCCGTTTCGTGGAGG
CAAGAAAGAGCTGAGCACCACCCAGTTCTCGGCCCCTGGGGCTCCGATCG
CAATCGGAGCACTTCTTCAGGCGTGTGCTCCATGGTGATATCTCTGGGCG
TGCCAGGCGTGTGGGGCACGGGCGTTGCGTGTGGCGAGAGCTTTGTGTCA
GAGCAGAATCCGATTCGAACTTCTCGACCTGGCGGTGCGATCGGAAATGT
GCAGATGTATGGAAACACTAACACTCCCCCGCGCTCTCCAGCAGCTCTCG
CGCCATTGAACTTGGCGGGGCCAAACCATCGCCCCTTTGTAGACTGATTT
CGACCAGCTGGGGGCACGGCCTATGTGCATGTACGTACCTACCTCCCCCT
CTCTGCACACAGAGCACACCGCACACACGCCCACCCACTCACAACTCCCC
CGTGATCCTCTCGAAACGCCAGCCACCCCCCTCGACCCCCCCGCCGCCGC
CACCGCCGCCGCCGCCCCCGTCTGCCGTCGTTCCCCTCGAACATAACAGG
CCTTGCTGCCGGACACGGAGACGATTTTGCTGGAGACCACCACCGCAGCC
GCTGTCGCTGTCGCCGACCCGCCGGCGGACACGAGACCACGACCACCACC
ACCGGTCGCACCACCCGCCCCTCCCGCTGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5607:2610..10690-

>mRNA_L-elsbetiae_contig5607.13941.1 ID=mRNA_L-elsbetiae_contig5607.13941.1|Name=mRNA_L-elsbetiae_contig5607.13941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig5607:2610..10690- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTTCCCAGGAGGAGATGTCTGTGCCTAGCGCTAGCTACTGGTCT
TCTTCACGACCATCGATGCGCCCACGCTTTCGGAGTTGTTTCGGCAGGGC
TCGCTGGACGATCTGTGATGAGACCAAGCGTCACCCGTGTAGGCTCGACG
GTGGAGATTGAGCGAAGGAATGGCGTGGTGGGCACGACATGGACGGGCCC
TGAGATGGTGCTTCCCAGGAGGAGATGTCTGTGCCTAGCGCTAGCTACTG
GTCTTCTTCACGACCATCGATGCGCCCACGCTTTCGGAGTTGTTTCGGCA
GGGCTCGCTGGACGATCTGTGATGAGACCAAGCGTCACCCGTGTAGGCTC
GACGGTGGAGATTGAGCGAAGGAATGGCGTGGTGGGCACGACATGGACGG
GCCCTGAGGCCTTGCTGCCGGACACGGAGACGATTTTGCTGGAGACCACC
ACCGCAGCCGCTGTCGCTGTCGCCGACCCGCCGGCGGACACGAGACCACG
ACCACCACCACCGGTCGCACCACCCGCCCCTCCCGCTGCCGCCTTGCTGC
CGGACACGGAGACGATTTTGCTGGAGACCACCACCGCAGCCGCTGTCGCT
GTCGCCGACCCGCCGGCGGACACGAGACCACGACCACCACCACCGGTCGC
ACCACCCGCCCCTCCCGCTGCC
back to top