mRNA_L-elsbetiae_contig5604.13935.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5604.13935.1
Unique NamemRNA_L-elsbetiae_contig5604.13935.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 6.630e-67
Identity = 133/218 (61.01%), Postives = 147/218 (67.43%), Query Frame = 1
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGIDTPLSRGRDERVLPRNGGADRRRRECGQQARRRSNTSVFSGKRRAARSGQGSPSGERESALVSVRKSPVVYGGLQWTPESGPRARALVRNRPLYKRRRRTGSRNGRFSQTRGHRHLPLRCRCG 654
            MPSTLSK+SGS++  +ATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHHSVYHNHLAVSKDLIE GADLEARHGG DTPL     +            R + G        T +F     AA  G+     E    L+    +P++              R LVRNR LYKRRRRTGSRNGRFSQ+RGHRHLP+RCRCG
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLMDSRLDDGA-------TPLFL----AASDGRL----EAVRVLLRANANPLLSACGSLPLYMAVYNRPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.740e-44
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 1
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHG 279
            MPSTLSK+SGSVERAVATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHHSVYH HLAVS  LIE GADLEAR G
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 5.160e-43
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1
Query:   25 SGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGIDTPL 297
            SGSVER +ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHH+VYH HLAVSKDLIE GADL+AR GGIDTPL
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPL 489          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.830e-35
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSK 237
            MPSTLSK+SGS +  +ATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSK
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.470e-34
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSK 237
            MPSTLSK+SGS +  +ATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSK
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 500          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.950e-30
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  299 HVAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACESLPLYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVV 655
            H+AA +GFC+GMV LI+AGANVDSR+ DG+T ++ AA  G LEAV +L +  ANPLL    + PL +A + GHL VV+ELV  +G D C  +G   AL TAA   H  I+TFL DAGV+
Sbjct:  132 HLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVI 250          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.720e-30
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  299 HVAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACESLPLYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 652
            H+A  +GFC GMV LIDAGANVDSR+ +G+T ++ AA  G L+AV++LL+  ANP+L    + PL +A + GHL VV+ELV  +G D C+ +G   AL TAA   H  I+TFL DAGV
Sbjct:  119 HLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGV 236          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.690e-22
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  302 VAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLL------SACESLPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655
            +AA  G    M  L++AGAN++SR  DGATPLF AA +G ++AVR+LL A  +PLL      S   SLPL +A   GHL+VV EL+   G   C  S GG  AL  AA  KH+D++T L +AGVV
Sbjct:   23 IAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVV 147          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.530e-17
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  305 AATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACES------LPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655
            AA  G    +  L+ AG+N+++R  DGATPL++AA +G + AV +LL A A+PLL+          LPL +A  NGH +VV EL+   G D C  S GG  AL  AA    +DI+  L DAGVV
Sbjct:  122 AAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVV 245          
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.430e-14
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  359 NVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACES------LPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655
            N++SR  DGATPL++AA  G ++A R+LL A A+PLL+          LPL  A  NGH +VV EL+   G D C  S GG  AL  AA  K+++I+  L +AGVV
Sbjct:  140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVV 245          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH66_ECTSI6.630e-6761.01EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHQ8_9PHAE1.740e-4491.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE5.160e-4390.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE4.830e-3588.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE6.470e-3488.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE2.950e-3053.78Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LP44_ECTSI3.720e-3052.54EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FXY7_ECTSI8.690e-2248.80EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE1.530e-1744.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE3.430e-1446.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5604contigL-elsbetiae_contig5604:3845..4501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size657
Cds size657
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.0994403-CDS-L-elsbetiae_contig5604:3844..45011622816595.0994403-CDS-L-elsbetiae_contig5604:3844..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5604 3845..4501 -
1691683672.4501555-CDS-L-elsbetiae_contig5604:3844..45011691683672.4501555-CDS-L-elsbetiae_contig5604:3844..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5604 3845..4501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5604.13935.1prot_L-elsbetiae_contig5604.13935.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5604 3845..4501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5604.13935.1

>prot_L-elsbetiae_contig5604.13935.1 ID=prot_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLR
QGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGIDTPLS
RGRDERVLPRNGGADRRRRECGQQARRRSNTSVFSGKRRAARSGQGSPSG
ERESALVSVRKSPVVYGGLQWTPESGPRARALVRNRPLYKRRRRTGSRNG
RFSQTRGHRHLPLRCRCG*
back to top

mRNA from alignment at L-elsbetiae_contig5604:3845..4501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5604.13935.1 ID=mRNA_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=657bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:3845..4501- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTGCGGTTGC TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCGG CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA CCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTGATCGAGG GGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACCACTTTCA CGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACG CAGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCTCTGTTT TCAGCGGCAAGCGACGGGCGGCTCGAAGCGGTCAGGGTTCTCCTTCGGGC GAACGCGAATCCGCTCTTGTCAGCGTGCGAAAGTCTCCCGTTGTATATGG CGGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTCGTGCATTGGTAC GGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGC CGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTCTGCGATGCCGGTG TGGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5604:3845..4501-

>mRNA_L-elsbetiae_contig5604.13935.1 ID=mRNA_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:3845..4501- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTGCGGTTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTGATCGAGG
GGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACCACTTTCA
CGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACG
CAGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCTCTGTTT
TCAGCGGCAAGCGACGGGCGGCTCGAAGCGGTCAGGGTTCTCCTTCGGGC
GAACGCGAATCCGCTCTTGTCAGCGTGCGAAAGTCTCCCGTTGTATATGG
CGGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTCGTGCATTGGTAC
GGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGC
CGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTCTGCGATGCCGGTG
TGGTTGAATGCCATCAACTCTGAGCAAATCCAGCGGTTCCGTCGAGCGTG
CGGTTGCTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACA
CCGCTGATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCT
TCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTG
CTCTGCACCACTCGGTTTATCACAATCACCTGGCCGTGAGCAAAGACCTG
ATCGAGGGGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACC
ACTTTCACGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTG
ATCGACGCAGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACC
TCTGTTTTCAGCGGCAAGCGACGGGCGGCTCGAAGCGGTCAGGGTTCTCC
TTCGGGCGAACGCGAATCCGCTCTTGTCAGCGTGCGAAAGTCTCCCGTTG
TATATGGCGGTTTACAATGGACACCTGAAAGTGGTCCGCGAGCTCGTGCA
TTGGTACGGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCG
CAACGGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTCTGCGAT
GCCGGTGTGGTTGA
back to top