mRNA_L-elsbetiae_contig5603.13933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5603.13933.1
Unique NamemRNA_L-elsbetiae_contig5603.13933.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5603.13933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5603contigL-elsbetiae_contig5603:3075..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003890.1
Exons4
Model size372
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5603.13933.1prot_L-elsbetiae_contig5603.13933.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5603 3076..4567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.9947274-CDS-L-elsbetiae_contig5603:3075..31111622816594.9947274-CDS-L-elsbetiae_contig5603:3075..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 3076..3111 -
1691683672.3789637-CDS-L-elsbetiae_contig5603:3075..31111691683672.3789637-CDS-L-elsbetiae_contig5603:3075..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 3076..3111 -
1622816595.005979-CDS-L-elsbetiae_contig5603:3595..37421622816595.005979-CDS-L-elsbetiae_contig5603:3595..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 3596..3742 -
1691683672.389102-CDS-L-elsbetiae_contig5603:3595..37421691683672.389102-CDS-L-elsbetiae_contig5603:3595..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 3596..3742 -
1622816595.0159113-CDS-L-elsbetiae_contig5603:4094..41991622816595.0159113-CDS-L-elsbetiae_contig5603:4094..4199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 4095..4199 -
1691683672.3980155-CDS-L-elsbetiae_contig5603:4094..41991691683672.3980155-CDS-L-elsbetiae_contig5603:4094..4199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 4095..4199 -
1622816595.0287523-CDS-L-elsbetiae_contig5603:4486..45671622816595.0287523-CDS-L-elsbetiae_contig5603:4486..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 4487..4567 -
1691683672.41474-CDS-L-elsbetiae_contig5603:4486..45671691683672.41474-CDS-L-elsbetiae_contig5603:4486..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5603 4487..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5603.13933.1

>prot_L-elsbetiae_contig5603.13933.1 ID=prot_L-elsbetiae_contig5603.13933.1|Name=mRNA_L-elsbetiae_contig5603.13933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
KREAREKNRLNKEDNTRLLVMKAAERQENLREEHRMQMEYAAKMDTDEEK
KRADMQRLLDRQTKINERMSVIYDRFKAQEYSVEKRVDAEQRIEMETDAR
RAQEKEMKRVQLLQEQTRFLQKQ
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mRNA from alignment at L-elsbetiae_contig5603:3075..4567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5603.13933.1 ID=mRNA_L-elsbetiae_contig5603.13933.1|Name=mRNA_L-elsbetiae_contig5603.13933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1493bp|location=Sequence derived from alignment at L-elsbetiae_contig5603:3075..4567- (Laminarionema elsbetiae ELsaHSoW15)
AAGCGAGAGGCGAGGGAGAAAAACCGTCTCAACAAGGAGGACAATACCCG
TCTGCTAGTGATGAAGGCGGCCGAACGACAGGTATATAGATACCTGTATT
TAGGAGGGGCAGAGCTCGACACAAAGCGATGGTTGTAGACTACATATGAA
TTTCAGCCTTGCATGGTGATCGCGGAACACAGGCCACGCCCTCTGCCTCT
TCGAAAACGGTCGGACGGTCCAACAAGCTCTACTGCTGCTGCTGTAGGCA
ATTCAGAAGGGGCAGTGGCGGTAACCACCCGCCGGGTGAAGCACCCTCAC
TTCACCCCCAACATTATCTTGGCCCCCCTCGCCCGTCCTATCTCCCTCAT
CGCCCTCATCGGACATAGGAAAACCTGCGCGAAGAACACCGCATGCAGAT
GGAGTACGCGGCAAAGATGGACACCGACGAGGAAAAGAAACGCGCGGATA
TGCAAAGATTGTTAGATCGCCAGGTGAGCTTTTCATTTTGCTACGGCGCG
GGGAAAACTAGTTACATTCAGGAAACTGACTCGTGACGTCCCGCGGACTG
AAATCATCGGCACGAACAACGGTTGAAAACCGCGCGAATCGTCTACCCCG
GCGAGCAGAGACAGCCTCAAGTGTTTGCGACGCCTTGATGTGCTGGGTTA
TTCGCGCGACGCCTTGTGCTGGGTAATTCGCGATGACATGTGTCGTTGAC
CTCCTCTTTGCTGACGCGCCCTATCGTCGCTCTTATAGACGTGTCGCTCG
CGCGACTTGTTGTTATCTTCGTCGAAACGAACCCGAATCCAATTCAATTT
CTCAACCCGATGTACATACATCCAGACGAAGATCAACGAGCGCATGTCAG
TAATATACGACCGGTTCAAGGCCCAAGAGTATAGCGTCGAGAAGCGAGTG
GATGCAGAGCAGCGGATAGAGATGGAGACGGACGCCCGACGCGCACAAGA
GAAGGAGATGAAACGGGTGCAGGTACGATGCCTACTATGTACAGGTCGCG
CCACCACTTAAGAAATTGGTAGTTAAGAAAGGCTCACTTACGATACCCGG
ATAATAATCTGTACACTAACTCCTACTTATAGAAAGATGCCCCGCAGACA
AGTAAGAACTGAGCCTCGGGAAAATTAAGAGTTTCTTAAGTGGTGGTGCG
ATCTGTAGACGACGCGTCCAACACCACCGCGTTCTCAAGCAATGGTGCAT
ATGAAGGTATTTATATATCTTGTACCCAGTTCTACGTAAACGGGGAACGC
TGCGTGCTGCACGGACGCGTCCGTCCTTCTTTCATCGTATTCTGCATCAG
GATGGGTGGATACATAAGATAGGTACACTAGAACTTCCCGATACTTCGAA
GTACATATGTACGTCCCGACATGTGTTCCCCTCCTCTACCCCTCCCACGC
ACATCTTTCGTTTTGCGCTCCTGTGCCCTTGTGCCAAACGGTTACTTTTC
TTGTAGCTACTTCAAGAGCAAACGCGCTTTCTACAGAAACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5603:3075..4567-

>mRNA_L-elsbetiae_contig5603.13933.1 ID=mRNA_L-elsbetiae_contig5603.13933.1|Name=mRNA_L-elsbetiae_contig5603.13933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig5603:3075..4567- (Laminarionema elsbetiae ELsaHSoW15)
AAGCGAGAGGCGAGGGAGAAAAACCGTCTCAACAAGGAGGACAATACCCG
TCTGCTAGTGATGAAGGCGGCCGAACGACAGAAGCGAGAGGCGAGGGAGA
AAAACCGTCTCAACAAGGAGGACAATACCCGTCTGCTAGTGATGAAGGCG
GCCGAACGACAGGAAAACCTGCGCGAAGAACACCGCATGCAGATGGAGTA
CGCGGCAAAGATGGACACCGACGAGGAAAAGAAACGCGCGGATATGCAAA
GATTGTTAGATCGCCAGGAAAACCTGCGCGAAGAACACCGCATGCAGATG
GAGTACGCGGCAAAGATGGACACCGACGAGGAAAAGAAACGCGCGGATAT
GCAAAGATTGTTAGATCGCCAGACGAAGATCAACGAGCGCATGTCAGTAA
TATACGACCGGTTCAAGGCCCAAGAGTATAGCGTCGAGAAGCGAGTGGAT
GCAGAGCAGCGGATAGAGATGGAGACGGACGCCCGACGCGCACAAGAGAA
GGAGATGAAACGGGTGCAGACGAAGATCAACGAGCGCATGTCAGTAATAT
ACGACCGGTTCAAGGCCCAAGAGTATAGCGTCGAGAAGCGAGTGGATGCA
GAGCAGCGGATAGAGATGGAGACGGACGCCCGACGCGCACAAGAGAAGGA
GATGAAACGGGTGCAGCTACTTCAAGAGCAAACGCGCTTTCTACAGAAAC
AACTACTTCAAGAGCAAACGCGCTTTCTACAGAAACAA
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