mRNA_L-elsbetiae_contig5602.13932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5602.13932.1
Unique NamemRNA_L-elsbetiae_contig5602.13932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5602.13932.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.210e-8
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  717 AAKAFQILATILISLIXXXXXXAAFTPASVTGKLGLAAGIALVVFSVFQLIAFALMAALVSE 902
            AA AFQ LATI++S++      AAFTPA VTGKLGLA GI L VF+VF+L+AF   AA + E
Sbjct:   57 AATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEE 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5602.13932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD07_9PHAE1.210e-859.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5602contigL-elsbetiae_contig5602:1710..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1676
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5602.13932.1prot_L-elsbetiae_contig5602.13932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5602 2205..2994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.9162679-UTR-L-elsbetiae_contig5602:1709..22041622816594.9162679-UTR-L-elsbetiae_contig5602:1709..2204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5602 1710..2204 -
1691683672.3325908-UTR-L-elsbetiae_contig5602:1709..22041691683672.3325908-UTR-L-elsbetiae_contig5602:1709..2204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5602 1710..2204 -
1622816594.9597056-UTR-L-elsbetiae_contig5602:2994..38751622816594.9597056-UTR-L-elsbetiae_contig5602:2994..3875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5602 2995..3875 -
1691683672.36564-UTR-L-elsbetiae_contig5602:2994..38751691683672.36564-UTR-L-elsbetiae_contig5602:2994..3875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5602 2995..3875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.9352345-CDS-L-elsbetiae_contig5602:2204..24821622816594.9352345-CDS-L-elsbetiae_contig5602:2204..2482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5602 2205..2482 -
1691683672.3446636-CDS-L-elsbetiae_contig5602:2204..24821691683672.3446636-CDS-L-elsbetiae_contig5602:2204..2482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5602 2205..2482 -
1622816594.9474034-CDS-L-elsbetiae_contig5602:2972..29941622816594.9474034-CDS-L-elsbetiae_contig5602:2972..2994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5602 2973..2994 -
1691683672.3541706-CDS-L-elsbetiae_contig5602:2972..29941691683672.3541706-CDS-L-elsbetiae_contig5602:2972..2994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5602 2973..2994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5602.13932.1

>prot_L-elsbetiae_contig5602.13932.1 ID=prot_L-elsbetiae_contig5602.13932.1|Name=mRNA_L-elsbetiae_contig5602.13932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAALVSELEDDFQDAFGFSVEVSAGATLGVAVMAWILGTTDAVVTLVLLR
RATADQDGPFRNCLRACIPPVGGANAGVPAGVPAGVPAGQPGVSVVGTV*
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mRNA from alignment at L-elsbetiae_contig5602:1710..3875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5602.13932.1 ID=mRNA_L-elsbetiae_contig5602.13932.1|Name=mRNA_L-elsbetiae_contig5602.13932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig5602:1710..3875- (Laminarionema elsbetiae ELsaHSoW15)
GGTGTATTGGAGCTTCTGGGGCGTTCTGTTCTCTACACTACTCACCTGGG
TGTTCGCTGTGGCAGCAGCTGCGGATGATGCCTGGATTAATTCCATCTGG
TTTGAAGGTTTCGAATTTTCGAATGAATGCCAATTTCAAACTGGCACCTT
TGAAACATCCTGCGATATTTGTGAGTGCAAAAACTCTATCGAGCCCCCGT
ACTTATCAGGTTTGTCTCACAGGTAGGTGCTCACGCTTTGTGTTGCTTGA
AGTGACGTGTCTTTCGGTCCATGGTGTTCCTCTCGTTGACAGGCTAACGT
CTCGGCGGGATTGATTGTCACGCAGGCTTGGCTCAAAATTCTCCCAAGGG
TGTCGTTCAATAAACATGCCTCGCGATTCGATGCTGCAACAGCAGTAGAT
CGCAGGGACTTCCCCTCATTGTGTGGCGTTCGGGTAGATTGCAAGGACCT
CCCTCTTGTGTGCCGTTTTTTGGAGAGATGGTGTGAACGACAGCAGTGTA
GCAACAATACTTGATGTAATATTGTATTGTTACCGGGTTGGGGACTGCGT
CATCGGCGTTTTGGATTGAATGTAACACCTCCTTCGGAGTATACGCCTAG
GCTCTGTGGGGTTGGAAGTTTGGCTGTGCGCCCCTCAAGTTGTGTCTGAC
TCCTCTCACTTCTTTCCCGCGCCCCAACCAACCGCGAACCCAAATTGAAT
ATTTGTTTCAGTCACGGCAGCAAAAGCGTTCCAGATCTTGGCTACAATCC
TCATCAGCCTCATCCTCGTCCTGGTGATCGTCGCCGCTTTCACGCCGGCT
TCCGTCACTGGAAAGCTTGGACTTGCCGCGGGGATCGCGCTGGTGGTGTT
TTCTGTGTTCCAACTCATCGCCTTTGCCCTCATGGCTGCCTTGGTCTCCG
AACGTGAGACAAGAGATGTCTACCTTTGTCTTTGATGTGTGCGTAGTTTC
TCTTTTGGCCAGCTGAGCGTACGATTAACTTTACCACCAGTCGTCTACGA
GTTGAGTGCCGTATTACTCCGCGAGGTGAGGCAACAGCGGCCGTCACAGC
AGGTAGTTGTATGACGTCCGAAACGCCTCTCAATACTGAAAGTCGTGAAG
ATGTACCTTTCCCTCGACCCGGCGATGGAATGACCCTTCCGGCATATCAA
AGTGTAGCAGGGTATGAGTGAAGAGAGCATGTAGATTCGTCAGAAACCAA
CCACATACGTCAACGCGTGAACTCTGCAGCAGCCTGGACTTGCGTGGTCC
TTAGCGAGAGTGCGTAAGGATCGAACGGCATGGGTAGGTCCGTGTGCTGT
CGAAGATTTTCGCCTCTGGTGGTCAAACTCAAGCGCATTCGTTCCTTTCC
TTGCCCCGCGCTCCCGTTCTTCTGTTCCTTCCTGCTGGCTCAGTCGAGGA
TGATTTTCAGGACGCGTTTGGCTTCAGCGTCGAGGTGTCGGCCGGCGCTA
CGCTTGGTGTAGCCGTGATGGCTTGGATCCTCGGTACAACGGATGCAGTC
GTGACCCTAGTACTCCTGAGGCGCGCAACTGCCGACCAGGACGGTCCTTT
CAGGAATTGCCTGCGCGCGTGCATTCCTCCCGTCGGCGGCGCGAACGCGG
GGGTTCCGGCAGGGGTTCCGGCAGGGGTTCCGGCGGGTCAGCCCGGGGTC
TCTGTCGTCGGAACGGTTTAGTTGGTCCACCTTCCGGCTCAAACGAGTGA
GAACGGAACGGAGGGGGCGGATGGAGGAATCATCCAGCTGTTTATGGCAC
GCAGATGAGCCATTTTTATTGCCCCTCCGCTTGTCGTGCGTGTCGCGCAA
CAGGGTTCAGCGACTGGGTTCCATTGCTGTAGCAGGAATGTTTTATTGCT
TCCTGACAGGACGAACTGACTGCGTTTTGTTTTTAGTTGAAATTCGTCTG
GCTCTGTTTTATTGATGGTGTGCTGCTATGATATCCTATTTCCCCAGGCA
GAACTCGCTTCTTAACTAGGATATGCTTTTACATTTGTTCACCGTGGTCC
TATGCTCCTGACTCGAATGCTTACTATGCTGTCAAGCGTCACGAGTCGCA
CGGACGGTCGTATGCCCGTTTCGATTTATGTTTTTATGATTGGCGTTAAT
TTTTTACGAAGTAAATCGCCTGGGGTAGCCCAACCTCGTCTAAATCCCCC
ATCCGTTTTTCTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5602:1710..3875-

>mRNA_L-elsbetiae_contig5602.13932.1 ID=mRNA_L-elsbetiae_contig5602.13932.1|Name=mRNA_L-elsbetiae_contig5602.13932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5602:1710..3875- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCCTTGGTCTCCGAACATGGCTGCCTTGGTCTCCGAACTCGAGG
ATGATTTTCAGGACGCGTTTGGCTTCAGCGTCGAGGTGTCGGCCGGCGCT
ACGCTTGGTGTAGCCGTGATGGCTTGGATCCTCGGTACAACGGATGCAGT
CGTGACCCTAGTACTCCTGAGGCGCGCAACTGCCGACCAGGACGGTCCTT
TCAGGAATTGCCTGCGCGCGTGCATTCCTCCCGTCGGCGGCGCGAACGCG
GGGGTTCCGGCAGGGGTTCCGGCAGGGGTTCCGGCGGGTCAGCCCGGGGT
CTCTGTCGTCGGAACGGTTTAGTCGAGGATGATTTTCAGGACGCGTTTGG
CTTCAGCGTCGAGGTGTCGGCCGGCGCTACGCTTGGTGTAGCCGTGATGG
CTTGGATCCTCGGTACAACGGATGCAGTCGTGACCCTAGTACTCCTGAGG
CGCGCAACTGCCGACCAGGACGGTCCTTTCAGGAATTGCCTGCGCGCGTG
CATTCCTCCCGTCGGCGGCGCGAACGCGGGGGTTCCGGCAGGGGTTCCGG
CAGGGGTTCCGGCGGGTCAGCCCGGGGTCTCTGTCGTCGGAACGGTTTAG
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