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Homology
BLAST of mRNA_L-elsbetiae_contig5598.13916.1 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.560e-61 Identity = 114/161 (70.81%), Postives = 128/161 (79.50%), Query Frame = 1
Query: 1 MDLTDLTIQSGKIHLVREIVRDGITGSVRVLGSLKSYDAAANVAIVEYKGDQLNIDASLLTDFQFRVDSLYEFIGEIQATAGAA-FPCRPGLPHRGVGAIASGA------AAAVAVEETISAGIMEAS-GKQGGSGRGPPPATPEKVKVHFQPIANAPILR 459
MDLTDLTIQ GKIHLVREI+RDG+TGSVRVLGSLKSYDAAA+VA+V+YKGDQL IDA LLTDFQFR+DSLYEFIGE+Q AGAA RPGLP G GA+ S A AA E +S GIM+ S ++G + R PPPATPEKVKVHF+PIANAPILR
Sbjct: 1 MDLTDLTIQPGKIHLVREILRDGVTGSVRVLGSLKSYDAAADVAVVDYKGDQLTIDACLLTDFQFRIDSLYEFIGEVQGAAGAARVSRRPGLPRWG-GALCSIARGLTAGAATTTAAERLSIGIMDVSVPERGETSRIPPPATPEKVKVHFKPIANAPILR 160
BLAST of mRNA_L-elsbetiae_contig5598.13916.1 vs. uniprot
Match: A0A1S8W7W3_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W7W3_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 3.790e-8 Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 82 VRVLGSLKSYDAAANVAIVEYKGDQLNIDASLLTDFQFRVDSLYEFIGEI 231
VR+LG L+SY+ N+A VEY+G QL +D +LL F ++++SLY++IGE+
Sbjct: 6 VRILGRLRSYNVHTNMAQVEYRGQQLLVDTALLGIFDYKINSLYQWIGEL 55
BLAST of mRNA_L-elsbetiae_contig5598.13916.1 vs. uniprot
Match: A0A0L0H773_SPIPD (Uncharacterized protein (Fragment) n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H773_SPIPD) HSP 1 Score: 58.2 bits (139), Expect = 6.510e-8 Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 19 TIQSGKIHLVREIVRDGITGS-VRVLGSLKSYDAAANVAIVEYKGDQLNIDASLLTDFQFRVDSLYEFIGEI---QATAGAAFPCRP 267
T + GKI + EI ++GS VRV+G+L +YD ++A++E+ QL +D SLL F R SL +FIGE+ Q F C P
Sbjct: 6 TRRHGKIVHIEEIQAQSMSGSSVRVIGTLLTYDTNTSLAVIEHARSQLVVDLSLLGPFSNRTKSLLQFIGEVETWQPPPNLPFSCLP 92
BLAST of mRNA_L-elsbetiae_contig5598.13916.1 vs. uniprot
Match: F4P7T1_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P7T1_BATDJ) HSP 1 Score: 54.3 bits (129), Expect = 2.360e-6 Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 79 SVRVLGSLKSYDAAANVAIVEYKGDQLNIDASLLTDFQFRVDSLYEFIGEIQATAG 246
+VRVLG LK Y+ N+ EYKG ++ID +LL F +++ SLY++IGE+ + G
Sbjct: 55 TVRVLGRLKDYNVHKNIVQAEYKGQCMSIDTTLLGIFDYKLGSLYQWIGELASFTG 110
BLAST of mRNA_L-elsbetiae_contig5598.13916.1 vs. uniprot
Match: D8RL68_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RL68_SELML) HSP 1 Score: 52.4 bits (124), Expect = 5.820e-6 Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 79 SVRVLGSLKSYDAAANVAIVEYKGDQLNIDASLLTDFQFRVDSLYEFIGEI 231
S+RV+G+L+S+D + VA + ++G +L +D +LL D R SLY+FIGE+
Sbjct: 24 SLRVMGTLESFDVESGVAHIRHEGAKLAVDTTLLRDIHLRPGSLYQFIGEL 74
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 199.5 |
| Seed ortholog evalue | 1.1e-48 |
| Seed eggNOG ortholog | 2880.D7G0N6 |
| Preferred name | ATG12 |
| KEGG ko | ko:K08336 |
| KEGG Pathway | ko04068,ko04136,ko04138,ko04140,ko04621,ko04622,map04068,map04136,map04138,map04140,map04621,map04622 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0002165,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007568,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009653,GO:0009791,GO:0009886,GO:0009987,GO:0009991,GO:0010259,GO:0010623,GO:0012501,GO:0012506,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0022411,GO:0022607,GO:0030139,GO:0030154,GO:0030234,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031386,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0035069,GO:0035096,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044042,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045335,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051179,GO:0051641,GO:0051716,GO:0055114,GO:0060033,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905037,GO:1990234 |
| EggNOG free text desc. | autophagosome assembly |
| EggNOG OGs | KOG3439@1,KOG3439@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03029,ko04121,ko04131 |
| Ec32 ortholog description | Autophagy-related protein 12 |
| Ec32 ortholog | Ec-14_001670.1 |
| Exons | 4 |
| Model size | 459 |
| Cds size | 459 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816592.1600127-CDS-L-elsbetiae_contig5598:0..44 | 1622816592.1600127-CDS-L-elsbetiae_contig5598:0..44 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 1..44 - |
| 1691683670.0098164-CDS-L-elsbetiae_contig5598:0..44 | 1691683670.0098164-CDS-L-elsbetiae_contig5598:0..44 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 1..44 - |
| 1622816592.1759894-CDS-L-elsbetiae_contig5598:377..554 | 1622816592.1759894-CDS-L-elsbetiae_contig5598:377..554 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 378..554 - |
| 1691683670.0232737-CDS-L-elsbetiae_contig5598:377..554 | 1691683670.0232737-CDS-L-elsbetiae_contig5598:377..554 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 378..554 - |
| 1622816592.1894135-CDS-L-elsbetiae_contig5598:975..1115 | 1622816592.1894135-CDS-L-elsbetiae_contig5598:975..1115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 976..1115 - |
| 1691683670.033928-CDS-L-elsbetiae_contig5598:975..1115 | 1691683670.033928-CDS-L-elsbetiae_contig5598:975..1115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 976..1115 - |
| 1622816592.2049823-CDS-L-elsbetiae_contig5598:2395..2493 | 1622816592.2049823-CDS-L-elsbetiae_contig5598:2395..2493 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 2396..2493 - |
| 1691683670.044027-CDS-L-elsbetiae_contig5598:2395..2493 | 1691683670.044027-CDS-L-elsbetiae_contig5598:2395..2493 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5598 2396..2493 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5598.13916.1 >prot_L-elsbetiae_contig5598.13916.1 ID=prot_L-elsbetiae_contig5598.13916.1|Name=mRNA_L-elsbetiae_contig5598.13916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MDLTDLTIQSGKIHLVREIVRDGITGSVRVLGSLKSYDAAANVAIVEYKG
DQLNIDASLLTDFQFRVDSLYEFIGEIQATAGAAFPCRPGLPHRGVGAIA
SGAAAAVAVEETISAGIMEASGKQGGSGRGPPPATPEKVKVHFQPIANAP
ILR back to topmRNA from alignment at L-elsbetiae_contig5598:1..2493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5598.13916.1 ID=mRNA_L-elsbetiae_contig5598.13916.1|Name=mRNA_L-elsbetiae_contig5598.13916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2493bp|location=Sequence derived from alignment at L-elsbetiae_contig5598:1..2493- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTGACGGACCTGACGATACAGTCCGGGAAGATACACCTAGTCCG
TGAAATTGTGCGCGATGGAATAACCGGCTCTGTGAGAGTATTGGGCAGGT
ATGGTCAAATGATCGAAGTGGTAGTATCCTCTGCCTTGAACTTCTCACGC
GTCTCACGCAGCTAAACTTCCCGATCAGCTATCTATGTTTTTAAGCTATT
TAGAAAAAGCACATGTAGTACAATAGCTGGAAGTGGTGATCCCTTGGTAT
GTGCCAGACAGCGAGGCCATTCACACGTGTTGCACCTCCCACAAAAACGA
CTCTATTATTGTTTTTGGTCCTCAAAATACGATCCCACGCAGCCCCCCCC
CGATCGATTGACACACCGGGTTAAAGCGCAGTTATTTCACCAAAGCTCCT
GCTGTAGTGTTGATCCAAAAATAGCCAGCCTACAAATATGGTTCCATTAC
CCCATCACCAACAGCGGGCCAAAGTGGTAGATTGATTGGACAAACACAGA
GCGGCTTCAGTCTAAAGTCGCTCGGTCGGACGCGGCGAAGGAGCGTTTTC
AGATCATTTTGGAGGCAGACAGGCGAGAGTGCTTTGCCCCTCTCGTGATC
AGAGAGGCGGAGTCGGTTTGAGCGCGCGACAGTAGAGTTGATAAAAAATA
AAAAGAACCTTGTGCCCCTTCTATGCTCACAGACCTCTACTGTCGCCGAC
TTTCAAGCGATTGGGTGCTGTCCTGAGGGTGACGCTCACGATTGGAATTG
CCTCCCAAACCGTGAAATTGAGCTGAAAAAAACAGCAACTGCTGTTGTTG
TCTCTGTGGAGCACGAATCACTCAGCAGCTCTCCTCTTCCAATATTAGTT
ACGGAACAAAGACTCCTTGCGGACACAAGGAATGGGCATCCTGAGGTCTC
CTGCTCTTTTCGTTGCAATCGGTGGTGTATGTGATGAGCATCAGCAGTCA
CGAAGTACACGACCGCGCAGGTTCAGAGCAAAAAAAAGCAAGGAGGGGAC
ACGAAAATAAAACCCCGCCCAACTCGAAGGCCTCCAATTTTGAAGACATT
TTTTTTCTCTGTGAGAGATGCAACACGTGTGGTATTCCGTTAATCATTAT
CATAAATCTTCCGAGATATTTAGTTACGCCGCTTCACCGACCGATGTTGA
CCTTTTTTTCCGACACCAGGGTTCATCAGCAGCACACATTAGAACATTGT
AACACCGTTACAATACAAGGAAAGTCCTTCAGGGTTCTGCCCGCCTTTTG
CCTCGACTTAACCGTATACCAACCGTCGAACGGGTTCCTCTGCTGTGCGC
GCACTGATGCCCCCGTCATCCATTGCTCCCGCGTCGAACGCACGTACATG
GACGTTTTCGCACAACCTGTTGTCGAAGCCTCAAAAGCTACGACGCCGCG
GCGAACGTGGCGATTGTTGAGTACAAAGGGGATCAGCTCAACATCGACGC
TTCCCTGCTAACGGACTTCCAGTTCAGGGTCGACTCGCTGTACGAGTTCA
TCGGCGAGATTCAGGCGAGTGGAAGGCAGCGGGCGAACTGGGAAAGGGAA
GAAAGAGTACAGAGCACGGACGAGGGGGGGGGGAGGGGTAACAGGCGCCC
AAGAACTTTAGTGGGTTAGCAATGAGTCGGTGCTTCTTTTTCCACATGGT
TTGAAACGTGGGGTTCAGTGGTCAACAGCCTGACGGACGAAAACACGCAA
GGTACATCTACCATCCGAGTTGCCTCGCCCCCGTCTTGACTGGCGCGCGT
TGTACATCCTTCTATACCTACCTCAAACGAACGAAATCAATGCAGGACGG
CCCCGGCGGGAAGAGAGTGAAGGCCCGCGTGTGCCGTAACGTTGACGGCC
TAGACACACATCTTTTCGAGAAGGCGCTGGAGGTGCGCCGTGCTTTCCTT
GCAGACCCGGCCTACCAAACCGGGGGGTCGGCGCCATAGCCGCAGGAGCA
GCTTTTCCGTGCAGACCCGGCCTACCACACCGGGGGGTCGGCGCCATAGC
CTCAGGAGCAGCGGCAGCGGTGGCAGTCGAAGAAACGATCTCGGCGGGAA
TCATGGAGGCCTCGGGTAAACAGGGGGGCAGCGGGCGGGGCCCCCCGCCA
GCCACACCAGAAAAAGGTCCGGGTTCCCCCGAGCAGTGTACCCCCCAACC
AAACGTCTATCCAGCCTCTTCCACTTCCGAAGGTTTTTCCCCCTGATGGT
GCTCGCCGCGTCTGTCGACGTTTTACTCCAAGAGATGCCGGTCGTGAATA
CGTATGTACACACATCTGCAAATCTAAAGAGAGACTTATCATACGCCGTG
TGCTGGTTTCATTCCTCTAGGGTTTCCATCGCAGGCGTTTCACTTTCTCC
CATTGCGGGCTGTTGTTGCGCCTCTTTTTCTGTTGTTGCGCCTCTTTTTT
TTTTTTTTTTTTTTTTTTTACTTCTGTTTTTGTTTCGAAAACGCTGCAGT
CAAGGTGCACTTCCAGCCCATCGCGAACGCTCCGATCCTCAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5598:1..2493- >mRNA_L-elsbetiae_contig5598.13916.1 ID=mRNA_L-elsbetiae_contig5598.13916.1|Name=mRNA_L-elsbetiae_contig5598.13916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig5598:1..2493- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTGACGGACCTGACGATACAGTCCGGGAAGATACACCTAGTCCG
TGAAATTGTGCGCGATGGAATAACCGGCTCTGTGAGAGTATTGGGCAGAT
GGACCTGACGGACCTGACGATACAGTCCGGGAAGATACACCTAGTCCGTG
AAATTGTGCGCGATGGAATAACCGGCTCTGTGAGAGTATTGGGCAGCCTC
AAAAGCTACGACGCCGCGGCGAACGTGGCGATTGTTGAGTACAAAGGGGA
TCAGCTCAACATCGACGCTTCCCTGCTAACGGACTTCCAGTTCAGGGTCG
ACTCGCTGTACGAGTTCATCGGCGAGATTCAGGCGACCTCAAAAGCTACG
ACGCCGCGGCGAACGTGGCGATTGTTGAGTACAAAGGGGATCAGCTCAAC
ATCGACGCTTCCCTGCTAACGGACTTCCAGTTCAGGGTCGACTCGCTGTA
CGAGTTCATCGGCGAGATTCAGGCGACCGCAGGAGCAGCTTTTCCGTGCA
GACCCGGCCTACCACACCGGGGGGTCGGCGCCATAGCCTCAGGAGCAGCG
GCAGCGGTGGCAGTCGAAGAAACGATCTCGGCGGGAATCATGGAGGCCTC
GGGTAAACAGGGGGGCAGCGGGCGGGGCCCCCCGCCAGCCACACCAGAAA
AAGCCGCAGGAGCAGCTTTTCCGTGCAGACCCGGCCTACCACACCGGGGG
GTCGGCGCCATAGCCTCAGGAGCAGCGGCAGCGGTGGCAGTCGAAGAAAC
GATCTCGGCGGGAATCATGGAGGCCTCGGGTAAACAGGGGGGCAGCGGGC
GGGGCCCCCCGCCAGCCACACCAGAAAAAGTCAAGGTGCACTTCCAGCCC
ATCGCGAACGCTCCGATCCTCAGGTCAAGGTGCACTTCCAGCCCATCGCG
AACGCTCCGATCCTCAGG back to top
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