mRNA_L-elsbetiae_contig559.13908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig559.13908.1
Unique NamemRNA_L-elsbetiae_contig559.13908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig559.13908.1 vs. uniprot
Match: D8LI43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI43_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 1.640e-109
Identity = 184/309 (59.55%), Postives = 209/309 (67.64%), Query Frame = 1 
Query:   85 MRSLPPNVIEHILQWLDLASHLRLREASRFDRDETPRRTTTLAARDCEQARRCQEKIFTPDKNTRLNRVTLDIAAPNSGRSSHSXXXXXXXXXXXXXXXXXXXXXXXXXXFLDDASRAARRAALPRLVREHRPAELWFKNMVRGGEFSDALLSLEENLDQVRKDTRVLHFGLATGGPRPYQDPRAHHWCLLRLRRLLGPAPSSGGGAAEGGKDN----AVKTELADLTKDILGAAAATTIMPHLVGRDARDEEAGEDEDGGGPGVRRVARS--ALPGAGKAYWPRLGELRLSCGIMAGDLEGLAECFGR 993
            MRSL PNV+EHILQWLDLASHLRLREAS FDRDETPRRTTTLAAR  EQARRCQ  IFTPDK TRL+ +TLD+ AP+SG SS                            FLD+AS A RR +LP L+REHRPAE+ FKNMVRG EFS+AL SLE N+DQVR+   VL FGL  GGPRPYQDPR+HHWC+LRLRRLLGPAP +  G A GG ++    AV TELA LT +++GAA A  ++PHL+      EE G  +       R  A +  A  G  KAYWP L EL LSCGIM GDLE LA C GR
Sbjct:    1 MRSLSPNVVEHILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSKCGMEPTQHLSSFNSSFSS--------FLDEASCAKRRNSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGGGSEDEGEGAVNTELAQLTVELIGAANAAMLVPHLI-HGLTGEEQGAGDTPSAEEFRPAAATLGAQVGGLKAYWPCLRELMLSCGIMRGDLEDLAGCLGR 300
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BLAST of mRNA_L-elsbetiae_contig559.13908.1 vs. uniprot
Match: A0A6H5KRS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS6_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.640e-59
Identity = 117/202 (57.92%), Postives = 135/202 (66.83%), Query Frame = 1 
Query:  415 FLDDASRAARRAALPRLVREHRPAELWFKNMVRGGEFSDALLSLEENLDQVRKDTRVLHFGLATGGPRPYQDPRAHHWCLLRLRRLLGPAP----SSGGGAAEGGKDNAVKTELADLTKDILGAAAATTIMPHLV-GRDARDEEAGEDEDGGGPGVRRVARSALP-GAG----KAYWPRLGELRLSCGIMAGDLEGLAECFG 990
            FLD+AS   R  +LP LVREHRPAE+ FKNMVRGGEFSDAL SLE N+DQVRK   VL FGL  GGPRPYQDPR+HHWC+LRLRRLLGP P       GG +E  ++ AV TELA LT +++G A A T++P L+ G    +E AGE      P    V  +A   GA     KAYWP L EL LSCGIM GDLE L+ C G
Sbjct:   17 FLDEASCITRHNSLPLLVREHRPAEIRFKNMVRGGEFSDALRSLELNIDQVRKSLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPGPLAEVGDAGGGSEDEEEGAVDTELAQLTVELMGPANAATLVPQLIHGLTGEEEGAGET-----PSAEEVRPAAAKLGAKVRGLKAYWPCLRELTLSCGIMRGDLEDLSACLG 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig559.13908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI43_ECTSI1.640e-10959.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS6_9PHAE3.640e-5957.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig559contigL-elsbetiae_contig559:25899..28064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003160.1
Exons3
Model size996
Cds size996
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig559.13908.1prot_L-elsbetiae_contig559.13908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig559 25899..28064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816591.467217-CDS-L-elsbetiae_contig559:25898..264001622816591.467217-CDS-L-elsbetiae_contig559:25898..26400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 25899..26400 -
1691683669.525337-CDS-L-elsbetiae_contig559:25898..264001691683669.525337-CDS-L-elsbetiae_contig559:25898..26400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 25899..26400 -
1622816591.4832163-CDS-L-elsbetiae_contig559:26715..270951622816591.4832163-CDS-L-elsbetiae_contig559:26715..27095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 26716..27095 -
1691683669.5367134-CDS-L-elsbetiae_contig559:26715..270951691683669.5367134-CDS-L-elsbetiae_contig559:26715..27095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 26716..27095 -
1622816591.4985106-CDS-L-elsbetiae_contig559:27950..280641622816591.4985106-CDS-L-elsbetiae_contig559:27950..28064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 27951..28064 -
1691683669.5466301-CDS-L-elsbetiae_contig559:27950..280641691683669.5466301-CDS-L-elsbetiae_contig559:27950..28064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig559 27951..28064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig559.13908.1

>prot_L-elsbetiae_contig559.13908.1 ID=prot_L-elsbetiae_contig559.13908.1|Name=mRNA_L-elsbetiae_contig559.13908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=332bp
RHTAYSKSPRHPQRECAETRGRFSCRGIMRSLPPNVIEHILQWLDLASHL
RLREASRFDRDETPRRTTTLAARDCEQARRCQEKIFTPDKNTRLNRVTLD
IAAPNSGRSSHSSSSGSSSGSSPPPTHHLSSHNSSMSSFLDDASRAARRA
ALPRLVREHRPAELWFKNMVRGGEFSDALLSLEENLDQVRKDTRVLHFGL
ATGGPRPYQDPRAHHWCLLRLRRLLGPAPSSGGGAAEGGKDNAVKTELAD
LTKDILGAAAATTIMPHLVGRDARDEEAGEDEDGGGPGVRRVARSALPGA
GKAYWPRLGELRLSCGIMAGDLEGLAECFGR*
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mRNA from alignment at L-elsbetiae_contig559:25899..28064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig559.13908.1 ID=mRNA_L-elsbetiae_contig559.13908.1|Name=mRNA_L-elsbetiae_contig559.13908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig559:25899..28064- (Laminarionema elsbetiae ELsaHSoW15)
AGGCACACGGCGTATTCGAAGAGTCCAAGACATCCCCAACGGGAATGTGC
TGAGACACGCGGGAGGTTTTCCTGCCGTGGTATCATGCGGAGCCTCCCTC
CAAATGTTATTGAGGTGGGAACGTTTGGATTTCAAAAATGAAAAGAAACT
CCGCGTAGTCTTGTAGTGTTGCCGTTGGGTGCCTGCTACCACCATGCACC
ACGCCACGCCCGGTTAAGCTTCGGAGAAGATTCTCACCCGAACCGACTTC
TTCAAAGACGAACAGTGATGGCAATCTAGAGCTGAGGTGGTGAAGAACAC
CATTGACCAGTAACTTGTACTACGCGGAGTTTAAAAAATCTGCATCCACG
AACGTATCCGACCACCCTTTACACACCCACCTCGCCGGAAACAACTACGT
GGTAGCTATGTTGAATTATTGTTCACCCTCGTCATCATCGAAAGTGAAGC
TCAGCCCTGAGGTATGGGAGATGAGCGTTGTATTGTTTGTACATATTTAG
GACATTTATTTTTGTATGCCGCGCGGTCTGCTGTCCGTCTGTGTCTGTGC
CTGCTGTCTGTCTGCCCCCCCTCCCTCTCTGTTTCCCTCTTCCCATCCCC
ATTCGCCTGCCTATGGCTCAGCTGGTCATGTCTACGGCTGGGCCGGTGAA
CGATGTCTGACAAAATGCACACACCTTGAGTTTGTGCCAGTTTTTCGAGA
AGAGCTCAGATATTATCTATGTAGTCTAGATAGATATCTATGCAGGTACC
TGGGTACTTCTGTAAATAGCTGTATCCGTGTACGATCTACGATCATGACC
GTTCCACAACGCACGATCGTCCACCAGCAGTCGTGGCAGCGGAAGCATCC
GCCGCAGAAGTGTACATTCAGCCGCCTAAAAAGTCGTACCGCCACGACAC
GACAGCTTTACCCGTTCTCATCCTACCCCATCCCATCCTTTGCGGTCCAT
TCAATCACTCGCTGACCAGCACATCCTGCAGTGGCTGGACCTCGCCTCCC
ACCTACGGCTCCGAGAAGCCAGCAGGTTCGACCGCGACGAAACCCCTCGA
CGAACGACGACCCTGGCGGCACGGGACTGCGAGCAGGCGAGGCGGTGCCA
AGAGAAGATCTTCACCCCGGACAAAAACACCCGCCTCAACCGCGTCACGC
TAGACATAGCGGCGCCGAACAGCGGCCGCAGCAGCCACAGCAGCAGTAGC
GGCAGCAGCAGCGGTAGCTCGCCGCCGCCGACGCACCACTTGTCGTCCCA
CAACTCTTCGATGTCGTCGTTTTTGGACGACGCGAGCCGCGCCGCGCGCC
GCGCTGCCCTTCCCCGCCTGGTCCGCGAGCACCGCCCGGCGGAGCTCTGG
TGAGACTGGCTTACTCTTGATGGGTTTGAAGGCGGGTTTCTGCAAGCGTT
ACCTACGAGTTTGCTGTCCGTACCTAGTATCTGGGACTTCGAAAGGAGGC
ATTGGTCTCGCCGATGATACATGATTTGATTACTTGTGCCTTGACAACCT
TAACGTGTCCATCCACTCGATTTGCACCGCCCACGAGCGTCTTCTTCCCC
TCTCTTCAACGGGAGCAACAAAAACAACACGCGTTCAACCTCCTTGTACA
TATGTGCATACAATATCTCCATCCCCTGCGTTCTCCCGGCTGGCGTTTTC
CTTTCTCCTAAAAGGTTCAAGAACATGGTCCGCGGCGGCGAGTTCTCGGA
CGCGCTCCTCTCGCTCGAGGAAAACCTCGACCAAGTCCGCAAGGACACCC
GCGTCCTCCACTTCGGGCTTGCCACCGGCGGTCCTCGCCCTTACCAAGAC
CCTCGGGCCCACCACTGGTGCCTGCTGAGGCTGAGGCGCTTGCTTGGGCC
GGCGCCGAGCAGTGGCGGGGGCGCCGCAGAAGGGGGGAAGGACAACGCGG
TGAAGACGGAGCTGGCCGACCTCACGAAGGATATCTTGGGCGCTGCCGCC
GCCACTACCATCATGCCCCACCTGGTTGGGAGGGACGCCCGCGACGAAGA
GGCCGGAGAGGACGAGGATGGGGGCGGTCCGGGGGTTCGTCGCGTGGCGC
GAAGCGCCTTGCCGGGAGCTGGGAAGGCCTACTGGCCGCGCCTGGGCGAG
CTCAGGCTGTCCTGTGGGATCATGGCCGGAGACCTGGAAGGCCTGGCAGA
GTGCTTCGGAAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig559:25899..28064-

>mRNA_L-elsbetiae_contig559.13908.1 ID=mRNA_L-elsbetiae_contig559.13908.1|Name=mRNA_L-elsbetiae_contig559.13908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig559:25899..28064- (Laminarionema elsbetiae ELsaHSoW15)
AGGCACACGGCGTATTCGAAGAGTCCAAGACATCCCCAACGGGAATGTGC
TGAGACACGCGGGAGGTTTTCCTGCCGTGGTATCATGCGGAGCCTCCCTC
CAAATGTTATTGAGAGGCACACGGCGTATTCGAAGAGTCCAAGACATCCC
CAACGGGAATGTGCTGAGACACGCGGGAGGTTTTCCTGCCGTGGTATCAT
GCGGAGCCTCCCTCCAAATGTTATTGAGCACATCCTGCAGTGGCTGGACC
TCGCCTCCCACCTACGGCTCCGAGAAGCCAGCAGGTTCGACCGCGACGAA
ACCCCTCGACGAACGACGACCCTGGCGGCACGGGACTGCGAGCAGGCGAG
GCGGTGCCAAGAGAAGATCTTCACCCCGGACAAAAACACCCGCCTCAACC
GCGTCACGCTAGACATAGCGGCGCCGAACAGCGGCCGCAGCAGCCACAGC
AGCAGTAGCGGCAGCAGCAGCGGTAGCTCGCCGCCGCCGACGCACCACTT
GTCGTCCCACAACTCTTCGATGTCGTCGTTTTTGGACGACGCGAGCCGCG
CCGCGCGCCGCGCTGCCCTTCCCCGCCTGGTCCGCGAGCACCGCCCGGCG
GAGCTCTGCACATCCTGCAGTGGCTGGACCTCGCCTCCCACCTACGGCTC
CGAGAAGCCAGCAGGTTCGACCGCGACGAAACCCCTCGACGAACGACGAC
CCTGGCGGCACGGGACTGCGAGCAGGCGAGGCGGTGCCAAGAGAAGATCT
TCACCCCGGACAAAAACACCCGCCTCAACCGCGTCACGCTAGACATAGCG
GCGCCGAACAGCGGCCGCAGCAGCCACAGCAGCAGTAGCGGCAGCAGCAG
CGGTAGCTCGCCGCCGCCGACGCACCACTTGTCGTCCCACAACTCTTCGA
TGTCGTCGTTTTTGGACGACGCGAGCCGCGCCGCGCGCCGCGCTGCCCTT
CCCCGCCTGGTCCGCGAGCACCGCCCGGCGGAGCTCTGGTTCAAGAACAT
GGTCCGCGGCGGCGAGTTCTCGGACGCGCTCCTCTCGCTCGAGGAAAACC
TCGACCAAGTCCGCAAGGACACCCGCGTCCTCCACTTCGGGCTTGCCACC
GGCGGTCCTCGCCCTTACCAAGACCCTCGGGCCCACCACTGGTGCCTGCT
GAGGCTGAGGCGCTTGCTTGGGCCGGCGCCGAGCAGTGGCGGGGGCGCCG
CAGAAGGGGGGAAGGACAACGCGGTGAAGACGGAGCTGGCCGACCTCACG
AAGGATATCTTGGGCGCTGCCGCCGCCACTACCATCATGCCCCACCTGGT
TGGGAGGGACGCCCGCGACGAAGAGGCCGGAGAGGACGAGGATGGGGGCG
GTCCGGGGGTTCGTCGCGTGGCGCGAAGCGCCTTGCCGGGAGCTGGGAAG
GCCTACTGGCCGCGCCTGGGCGAGCTCAGGCTGTCCTGTGGGATCATGGC
CGGAGACCTGGAAGGCCTGGCAGAGTGCTTCGGAAGGTGAGTTCAAGAAC
ATGGTCCGCGGCGGCGAGTTCTCGGACGCGCTCCTCTCGCTCGAGGAAAA
CCTCGACCAAGTCCGCAAGGACACCCGCGTCCTCCACTTCGGGCTTGCCA
CCGGCGGTCCTCGCCCTTACCAAGACCCTCGGGCCCACCACTGGTGCCTG
CTGAGGCTGAGGCGCTTGCTTGGGCCGGCGCCGAGCAGTGGCGGGGGCGC
CGCAGAAGGGGGGAAGGACAACGCGGTGAAGACGGAGCTGGCCGACCTCA
CGAAGGATATCTTGGGCGCTGCCGCCGCCACTACCATCATGCCCCACCTG
GTTGGGAGGGACGCCCGCGACGAAGAGGCCGGAGAGGACGAGGATGGGGG
CGGTCCGGGGGTTCGTCGCGTGGCGCGAAGCGCCTTGCCGGGAGCTGGGA
AGGCCTACTGGCCGCGCCTGGGCGAGCTCAGGCTGTCCTGTGGGATCATG
GCCGGAGACCTGGAAGGCCTGGCAGAGTGCTTCGGAAGGTGA
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