mRNA_L-elsbetiae_contig5583.13900.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5583.13900.1
Unique NamemRNA_L-elsbetiae_contig5583.13900.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5583.13900.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.490e-9
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   22 PEFKNLWERPEVCPPNWASGEKEALNLNGVHPELVRCVDHVFVRGCEAEFLGGLVETSSGSCPTKKPDAAGGNG 243
            P F+ L + PEVC P    G   A     +H  L+RC++ V++RGCE  +LG +V+   G CP ++P    G G
Sbjct:  179 PGFEQLGDNPEVCRPQMEDGADNAFGYEHIHSRLLRCMNRVYLRGCEKAYLGKMVDLE-GFCPKQEPGKRKGAG 251
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5583.13900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRV9_ECTSI4.490e-937.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5583contigL-elsbetiae_contig5583:3031..5165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.6575584-UTR-L-elsbetiae_contig5583:3030..30391622816590.6575584-UTR-L-elsbetiae_contig5583:3030..3039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 3031..3039 +
1691683668.923233-UTR-L-elsbetiae_contig5583:3030..30391691683668.923233-UTR-L-elsbetiae_contig5583:3030..3039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 3031..3039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.6739328-CDS-L-elsbetiae_contig5583:3039..31361622816590.6739328-CDS-L-elsbetiae_contig5583:3039..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 3040..3136 +
1691683668.9330544-CDS-L-elsbetiae_contig5583:3039..31361691683668.9330544-CDS-L-elsbetiae_contig5583:3039..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 3040..3136 +
1622816590.6857312-CDS-L-elsbetiae_contig5583:4944..51651622816590.6857312-CDS-L-elsbetiae_contig5583:4944..5165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 4945..5165 +
1691683668.9431562-CDS-L-elsbetiae_contig5583:4944..51651691683668.9431562-CDS-L-elsbetiae_contig5583:4944..5165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 4945..5165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5583.13900.1prot_L-elsbetiae_contig5583.13900.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5583 3040..5165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5583.13900.1

>prot_L-elsbetiae_contig5583.13900.1 ID=prot_L-elsbetiae_contig5583.13900.1|Name=mRNA_L-elsbetiae_contig5583.13900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MDMLPEFKNLWERPEVCPPNWASGEKEALNLNGVHPELVRCVDHVFVRGC
EAEFLGGLVETSSGSCPTKKPDAAGGNGNRMRNRRGLTTKNDRKGGSSGG
SGGSSG
back to top

mRNA from alignment at L-elsbetiae_contig5583:3031..5165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5583.13900.1 ID=mRNA_L-elsbetiae_contig5583.13900.1|Name=mRNA_L-elsbetiae_contig5583.13900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2135bp|location=Sequence derived from alignment at L-elsbetiae_contig5583:3031..5165+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAGGCAATGGACATGCTGCCCGAATTCAAGAATCTCTGGGAGAGGCC
GGAGGTGTGCCCGCCCAACTGGGCGAGCGGGGAGAAAGAGGCCTTGAATC
TAAACGGTATGTGTCGTACGTGTTTCACGTGCGCGAAGAAAGGTTTCCTG
TGGAGGCGGCATGCCCCAACTGCTGCTATGAAGATTTAGGTATCTTTTGC
ATATTCAAATCGAGGGCCGAGGTTAGAGTTTCGTACGTGTTTCTATTGCT
CCGTGCGTCTTCACCTGATCGAATGTGTATGCACTCCTAACATGGCACAT
ACGAGAGGGATCCGAACCAGAAATTACCAAGGGCGTTCATGGGAGCCAAT
TGGACGGCATTCCCATATATATTTTTGGGACGGCATGGGAATGGGAAGAG
CATCCCACAGTAGTGAAATACGTGCTGCTCGTCCCACCCCGTCCCCATCC
CACCGCGAATTACTGGGCCCCACTTGCTCCCACATACCGATATAGTTCCG
CTCCCGTCCCACCTGCTTCCCGTCCCGCCATTATCACAGCTACTTCCGTC
TCAATCCCGCTGTAAACGCAGCTACCCCCGTCCCATGTTCACCGTGGGGG
AAAGACAGACTTCCCACGCTAGGTCCCACATTTTCTTCCAAATAGAATGT
CCCGCAGCGTTCTGGACACACACACACGCGCACCAGAATCGTGAAAGTAC
AGAAAATAGTCTTCCTCGAATCTCCAATCTTTGTCCGCATTTGGGAAGGT
ATGCAGCAGGGGGCCATACACACAAAGGCTTAGGAAGCACCTTATCCCCG
GGCTAGGGAAGGTGTTGAGGGGTTGGGATGCTTTGGAGGCTGAGCGGAAA
TTGACCAAAGAAGCAGCGGCTAGCGCCAAGAACGCCGCGGCGGGTCGTAC
GGATGTTCCTCCTGTTTCAGTTTCTTCGGTGTTTATTATTTTTTTTTATT
GTTTATATCGTTTTCTCTCTTTTCTTATTTGCTTTGCTTCGGGAGAGCGT
TGTGCGTTGATCCTTGATCCTTGGATACCACACCTGCAAATATACCATAG
TTTGCTTTTCGTTCGGGTTGTTGGTGGCTGATATGTATGAAAAATCGTTT
TTCAAGGGGCTTTTCTAATTGCGTTTTTTGTCGGTTTGGACTGCCCCGTG
TGGTCCCATACTGAATCCCACGATGAACCCCACCTTTCCCAGCAACGTTC
CGCCACCCCCTATGACACATAATTGTCTCATCCATCCCACCCCATCTCGA
TTTTTGTGGATTCGCATGTGGTCACCATTACTGAAAAGCATCCCAGCTTC
CCGTCCCATTTCCATCCCGCATATGTGCAACGCACGTGGGCCTCGCCCAT
CCCGTTAAAGTGGCAATAACTGAACACGGGATCTCATACCACAGCACACA
ATGAGCCCCCTTTTGTTACCACCTGCGGCAAAGCAGAACCATCCGATCCC
GCGTGCACAGACGGGGCGTTCGATCGGGGCCTTCGATCGGCCCCGGTGCA
CGCCCTTGGAAATTACCACTTAGCAGTCAGCACGGGGCTCCGCTCCGCCT
TCCCATCCGCCTCGAAATAGATACACAGAAAGCTCGACCAGCGGTGAAAA
ACCTCGAGGCAAGCACGAAACGCCAATGCCCCTTGAACAAACCCGCCTTC
TGTCTCGTTGTGCGGAGAGGTGCGAGGCAATACAGCGGAACCGCTACGAA
TACCCCCCCCCCCCCTCCCCAACCCTCACCTGCACCCCCTACGCAGCCCC
TCCTTTTCTCCCGCCCCACCTCTCGCATCCTCGGTACTCTCCGCCCTTGC
CTCTCCCCAGGCGACTCCGCGTGCCGGTGTACACTCGATCCCCCAATCTC
TCTCTCTATCTCTCGTTCTCTCTGTCTGCTACTGCTGTGCCTTTGTCGCC
CTCTGACAAACAAGGCGTCCACCCGGAACTCGTGCGGTGCGTCGACCACG
TTTTCGTGAGGGGGTGCGAGGCGGAGTTCCTCGGAGGGCTCGTCGAGACG
TCGTCGGGCTCCTGCCCGACCAAAAAGCCCGACGCCGCCGGGGGCAACGG
CAACAGGATGAGAAATCGGCGAGGGTTGACGACGAAGAACGACAGAAAGG
GGGGCAGCAGTGGCGGCAGCGGCGGCAGCAGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5583:3031..5165+

>mRNA_L-elsbetiae_contig5583.13900.1 ID=mRNA_L-elsbetiae_contig5583.13900.1|Name=mRNA_L-elsbetiae_contig5583.13900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5583:3031..5165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATGCTGCCCGAATTCAAGAATCTCTGGGAGAGGCCGGAGGTGTG
CCCGCCCAACTGGGCGAGCGGGGAGAAAGAGGCCTTGAATCTAAACGATG
GACATGCTGCCCGAATTCAAGAATCTCTGGGAGAGGCCGGAGGTGTGCCC
GCCCAACTGGGCGAGCGGGGAGAAAGAGGCCTTGAATCTAAACGGCGTCC
ACCCGGAACTCGTGCGGTGCGTCGACCACGTTTTCGTGAGGGGGTGCGAG
GCGGAGTTCCTCGGAGGGCTCGTCGAGACGTCGTCGGGCTCCTGCCCGAC
CAAAAAGCCCGACGCCGCCGGGGGCAACGGCAACAGGATGAGAAATCGGC
GAGGGTTGACGACGAAGAACGACAGAAAGGGGGGCAGCAGTGGCGGCAGC
GGCGGCAGCAGCGGCGCGTCCACCCGGAACTCGTGCGGTGCGTCGACCAC
GTTTTCGTGAGGGGGTGCGAGGCGGAGTTCCTCGGAGGGCTCGTCGAGAC
GTCGTCGGGCTCCTGCCCGACCAAAAAGCCCGACGCCGCCGGGGGCAACG
GCAACAGGATGAGAAATCGGCGAGGGTTGACGACGAAGAACGACAGAAAG
GGGGGCAGCAGTGGCGGCAGCGGCGGCAGCAGCGGC
back to top