Homology
BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Match:
D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI)
HSP 1 Score: 118 bits (295), Expect = 1.150e-28
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 3
Query: 186 LVFR*RFSSGLHTVVFHGSGNGTGLVGNCYIREVNQFSMAASVPGLRHSSSASIQYKGSFLMLKMPGMGDPRLRTRLHMRRVHKWAGPLFPDDCETLP 479
L + +FS+ TV+FHG GNGTGLVGNCYIRE++ FS + +PG+R S +YKGSFLMLK GMG +LR+ +H RRVHKWAG FPDD +P
Sbjct: 80 LALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRD--KYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDDSVPMP 175
BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Match:
A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE)
HSP 1 Score: 57.8 bits (138), Expect = 4.130e-7
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 3
Query: 201 RFSSGLHTVVFHGSGNGTGLVGNCYIREVNQFSMAASV 314
RFS+ + TV+FHGSGNGTGLVGNCYIRE+++FS + +
Sbjct: 157 RFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFSSFSQI 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.15e-28 / Id = 57.14 Expect = 4.13e-7 / Id = 65.79 Sequence D8LN65_ECTSI A0A6H5KY23_9PHAE
Match Name E-value Identity Description
D8LN65_ECTSI 1.150e-28 57.14 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY23_9PHAE 4.130e-7 65.79 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 2
Model size 479
Cds size 309
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816589.859942-UTR-L-elsbetiae_contig5577:11221..11237 1622816589.859942-UTR-L-elsbetiae_contig5577:11221..11237 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5577 11222..11237 -
1691683668.3429456-UTR-L-elsbetiae_contig5577:11221..11237 1691683668.3429456-UTR-L-elsbetiae_contig5577:11221..11237 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5577 11222..11237 -
1622816589.8918781-UTR-L-elsbetiae_contig5577:12126..12280 1622816589.8918781-UTR-L-elsbetiae_contig5577:12126..12280 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5577 12127..12280 -
1691683668.3728576-UTR-L-elsbetiae_contig5577:12126..12280 1691683668.3728576-UTR-L-elsbetiae_contig5577:12126..12280 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5577 12127..12280 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816589.8710046-CDS-L-elsbetiae_contig5577:11237..11393 1622816589.8710046-CDS-L-elsbetiae_contig5577:11237..11393 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5577 11238..11393 -
1691683668.3544683-CDS-L-elsbetiae_contig5577:11237..11393 1691683668.3544683-CDS-L-elsbetiae_contig5577:11237..11393 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5577 11238..11393 -
1622816589.8817585-CDS-L-elsbetiae_contig5577:11973..12126 1622816589.8817585-CDS-L-elsbetiae_contig5577:11973..12126 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5577 11974..12126 -
1691683668.3643253-CDS-L-elsbetiae_contig5577:11973..12126 1691683668.3643253-CDS-L-elsbetiae_contig5577:11973..12126 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5577 11974..12126 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5577.13893.1
>prot_L-elsbetiae_contig5577.13893.1 ID=prot_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MGWGAFVAPFSCLPVKIFEWASYRSVPWIGQRNRACGELLHPRGQPIQHG SFRAGPATLILGLDPIQGVVSDAQDAGHGRPSAQDTAAHAAGSQVGRPSV PR* back to top mRNA from alignment at L-elsbetiae_contig5577:11222..12280-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5577.13893.1 ID=mRNA_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1059bp|location=Sequence derived from alignment at L-elsbetiae_contig5577:11222..12280- (Laminarionema elsbetiae ELsaHSoW15)GCTGTGGATTTCTTGTCCTTCGGGGCGCGCGCTCATTTCATAGCTATATC
TTCGCTGACCGAGCTCACGCACGTGTTCCTCTTTTCGCCCAGCCTGCTCC
CCCTCCACTTCTTTTCTCCCCCCTTTCTCCGTTTCTCTGCCTCTGGTTTT
TGCC ATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGA
AGATTTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGG
AACCGGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCA
TGGCAGC GTGAGTACCCTGCTGTTTTTTTTATTTTTATGTTGTCGCATTT
GTTGCGTTTGTTGATTTCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGGTG
GTGGTGGTGATGGCGATGGCGATGGTGGTGGTTGTTTTTGTTGGTTGTTG
GTGGTGGGTAGCTTGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
CGCTGCTGCCGCTGGCGCTGCTGCCGCTGTTGCCAAAGCCGGTCTACCGC
CCGAGGCCAGGAAGCCACGGCCTCTCCCGCCGTACTACTAATGTTTGCTC
ATGCTTCTCTTCTTCCCCCGCACCATCCGCGGGGCCAGGAAGGCACGCCC
CCTTCCGCCGTGCCGACGCGCATGCCTATCCGGCGAATTTTGTTCGTGTG
CTTCTCTCCTTCCCTCGTTCCATTCGCGAGGCCCGGAAGCCATATGCCCC
CTTTCCCAGAGCAAAAAAAAAGCAAAAATCGTTAGACAACAAGAAAGCAA
GCGTGGCCGGCCGACCACGCACTGGCTCGAAACCACGCAACAGCGAAAAC
CCCGTGTTTTTTTTTGCTGCTTGGCCTTGTCCTTCAGTTCCGTGCCGGGC
CTGCGACACTCATCCTCGGCCTCGATCCAATACAAGGGGTCGTTTCTGAT
GCTCAAGATGCCGGGCATGGGAGACCCTCGGCTCAGGACACGGCTGCACA
TGCGGCGGGTTCACAAGTGGGCCGGCCCTCTGTTCCCCGATGA TTGTGAG
ACCTTGCCT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5577:11222..12280-
>mRNA_L-elsbetiae_contig5577.13893.1 ID=mRNA_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig5577:11222..12280- (Laminarionema elsbetiae ELsaHSoW15) ATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGAAGAT TTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGGAACC GGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCATGGC AGCATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGAA GATTTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGGA ACCGGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCAT GGCAGCTTCCGTGCCGGGCCTGCGACACTCATCCTCGGCCTCGATCCAAT ACAAGGGGTCGTTTCTGATGCTCAAGATGCCGGGCATGGGAGACCCTCGG CTCAGGACACGGCTGCACATGCGGCGGGTTCACAAGTGGGCCGGCCCTCT GTTCCCCGATGATTCCGTGCCGGGCCTGCGACACTCATCCTCGGCCTCGA TCCAATACAAGGGGTCGTTTCTGATGCTCAAGATGCCGGGCATGGGAGAC CCTCGGCTCAGGACACGGCTGCACATGCGGCGGGTTCACAAGTGGGCCGG CCCTCTGTTCCCCGATGA back to top