mRNA_L-elsbetiae_contig5576.13890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5576.13890.1
Unique NamemRNA_L-elsbetiae_contig5576.13890.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: D8LGT3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT3_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 8.390e-97
Identity = 174/224 (77.68%), Postives = 196/224 (87.50%), Query Frame = 1 
Query:   28 MKSAFLAAVLSLLSAASIEGFVAN---MPVHTACSSSRASAMQMSAEPQTRQAVLQQGLAGVLSLAGVAAVSSQPASAGGLSPVSNGDKWAGVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAFL 690
            MKSAFLAAVL+LLS AS + FVA    +PV  A S  R +A++MSAEPQ+RQA LQQG+AGVLSLAG+AA+ SQPASAGGLSPVSN DKWAGVLDPRSAVKD+DKMASD VKKDL ALK YQ+ATK+I+  LAKD QA+VLPKV+++FKFAEFRQVLN VNDVFDEDTQRGTDLIIRNMLQDALEL+ ASKMKPD+PRS RK+EILNKKL KLDQAF  LNA+L
Sbjct:    1 MKSAFLAAVLALLSVASTDAFVAGSAKLPVRAAAS--RTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAAL-SQPASAGGLSPVSNSDKWAGVLDPRSAVKDSDKMASDGVKKDLAALKNYQSATKDISDTLAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSPRKVEILNKKLMKLDQAFEKLNAYL 221
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7R9VT45_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT45_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.020e-29
Identity = 83/181 (45.86%), Postives = 111/181 (61.33%), Query Frame = 1 
Query:  148 MSAEPQTRQAVLQQGLAGVLSLAGVAAVSSQPASAGGLSPVSNGDKWAGVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAFL 690
            M+ E  TR   LQQ LA   S A V   S+  A  GG      G     VLDP+SA  DAD +ASD+V+K L A+K Y ++ K +   L+ DSQAD+ PK+++ F FA+ R  LN VN  FDEDTQRGTD +IR ++QD  EL  A++ K  + RSER+++I+  KL KL +AF    AF+
Sbjct:    2 MAQEGTTRSQFLQQSLAAAASFA-VLPQSANAAKYGGF-----GAGSPEVLDPKSAEVDADILASDAVQKALGAVKSYASSVKAMQDTLSADSQADIGPKIRKDFDFAQLRADLNTVNSAFDEDTQRGTDRLIRIVMQDITELETANRQKDGVARSERRLDIMKGKLDKLGKAFNDFLAFV 176
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A6U0F263_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0F263_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.130e-27
Identity = 80/190 (42.11%), Postives = 114/190 (60.00%), Query Frame = 1 
Query:  127 SRASAMQMSAEPQTRQAVLQQGLAGVLSLAGVAAVSSQP--ASAGGLSPVSNGDKWAGVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAFL 690
            SR S   +SAE Q+R   L Q  A + +LA   A S+     S G  SP         V+DP SA+ D D +AS+SV+K +  ++ Y TA K ++A +A DSQAD+ P +++   F + R   N V + FDEDTQRGTD ++R +LQD  EL  A+K KP +PRSE+++ I+  KL KL++AF    AF+
Sbjct:   25 SRQSTTALSAE-QSRSGFLAQSAAAIATLAAFPATSNAAKYGSFGAGSPE--------VIDPSSAIIDQDILASESVQKCISGIRSYLTAIKSMSATVASDSQADIGPSIRKELDFVQVRADFNGVTEAFDEDTQRGTDRLVRIILQDITELETANKQKPGVPRSEKRLSIVKGKLAKLEKAFDDFLAFV 205
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7S2Y0S9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0S9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.640e-26
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = 1 
Query:  292 GVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAF 687
            GV+DP++A  D D+++   VK DLD LK Y T  KE  A +AKD Q  ++  V+    F + R  LN +N VFDEDTQRGTD +IR+ LQD  EL ++++ KP + RS RKI ++NKKL+KL+  F  L AF
Sbjct:   83 GVVDPKTASIDTDELSK--VKGDLDTLKGYLTTVKEFRAQMAKDPQTSLVADVQSKLDFGKMRTTLNNLNGVFDEDTQRGTDRLIRDTLQDVYELESSARQKPGVDRSPRKITLVNKKLEKLENVFTDLLAF 212
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7S2UA53_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA53_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.050e-25
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  295 VLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAF 669
            VLDP+ A+ D D +A+ SV+  L  +K Y +   E+ + LAKDSQAD+ P V+    F++ R  LN VN+ FDEDTQRGTD IIR +LQD  EL  A+  KP IPRSER++ I+N KL KL  AF
Sbjct:   74 VLDPKEAIVDTDILATASVQGALKGVKGYLSTVLELKSTLAKDSQADIGPSVRRQLDFSKIRADLNNVNEAFDEDTQRGTDRIIRIILQDITELEAANTQKPGIPRSERRLGIMNAKLTKLQTAF 198
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7S2EU98_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EU98_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.280e-25
Identity = 75/190 (39.47%), Postives = 114/190 (60.00%), Query Frame = 1 
Query:  127 SRASAMQMSAEPQTRQAVLQQGLAGVLSLAGVAAVSSQP--ASAGGLSPVSNGDKWAGVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAFL 690
            SR S   +SAE Q+R   L Q  A   ++A   +VS+     S G  SP         VLDP++A+ D D + ++SV+K +  ++ Y +A K ++A +A DSQAD+ P +++   F + R   N V + FDEDTQRGTD ++R +LQD  EL  A++ KP +PRSE+++ I+  KL KL++AF    AF+
Sbjct:   25 SRQSTTALSAE-QSRSDFLTQSAAAFATIAAFPSVSNAAKYGSFGAGSPE--------VLDPKTAIIDEDILKTESVQKCISGIRSYLSAVKSMSATVAADSQADIGPSIRKELDFVQVRADFNGVTEAFDEDTQRGTDRLVRIILQDITELETANRQKPGVPRSEKRLSIVQGKLSKLEKAFDDFLAFV 205
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7S2BZB6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZB6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.550e-25
Identity = 60/125 (48.00%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  295 VLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAF 669
            VLDP+S   D++ +AS SV+  L  +++YQ   K++   + ++ Q D+ P V+ESF F++ R  LN VN   DEDTQRGTD +IR ++QD  EL NA+ +KP  PRS RK+EILN+KL KL ++F
Sbjct:   75 VLDPKSGTIDSEILASSSVQDSLKNVRRYQDIVKQMEQAMIQNDQVDLGPAVRESFDFSKIRYALNNVNSALDEDTQRGTDRLIRGVIQDLAELENANLVKPGNPRSARKVEILNRKLSKLCKSF 199
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A7S2RFI5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFI5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.130e-23
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  295 VLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAF 669
            V +P +A  D + + S  V++ L A+K YQTA  EI + LA++ Q +++P ++++F F++ R  LN VN   DEDTQRGTD +IR ++QD  EL  AS +KP  PRS RKI  +N KL KLD AF
Sbjct:   93 VTEPNAAAVDPEVLKSSEVQESLKAIKGYQTAVNEIQSQLAQNDQLELVPAIRKNFDFSKIRTDLNNVNAALDEDTQRGTDRLIRAVIQDLTELETASALKPGKPRSPRKIAAMNGKLAKLDAAF 217
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: B8BU34_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU34_THAPS)

HSP 1 Score: 108 bits (270), Expect = 4.510e-23
Identity = 60/140 (42.86%), Postives = 93/140 (66.43%), Query Frame = 1 
Query:  295 VLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAFL*IYKEILA 714
            V+DP+ A+ D D + SDSV+K L A++ YQ +  ++ + LA DSQAD+ PK+++ F F+  R  LN +N   DEDTQRGTD I+R +LQD  EL  A K K  +PRS+++++ +  KL KL+++F  +   +  Y +IL+
Sbjct:  127 VVDPKDAIIDEDILKSDSVQKGLAAVRGYQQSVVDMKSALASDSQADIGPKIRKDFDFSVIRTDLNAINAALDEDTQRGTDRIVRAILQDITELEVAQKQKAGVPRSDKRLKTVCGKLDKLEKSFRKIANVIIKYGDILS 266
[Close]
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Match: A0A1Z5KC14_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC14_FISSO)

HSP 1 Score: 106 bits (264), Expect = 7.690e-23
Identity = 61/132 (46.21%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:  292 GVLDPRSAVKDADKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKIEILNKKLQKLDQAFVSLNAF 687
            GVLDP++A  DAD + SD+V+  L  +K Y++A +++ A L  DSQ +V   + +   FA+ R  LN VN  F+EDTQRGTD +IR ++QD  EL  A+  K  IPRS R++EI+  KL KL++AF    AF
Sbjct:   79 GVLDPKTAEIDADILKSDAVQSALKKVKGYRSAVQDMQAALKADSQVNVRKTIIKDLDFADLRDTLNTVNTAFEEDTQRGTDRLIRVIMQDITELEQANTQKDGIPRSPRRVEIMEGKLAKLEKAFSDFLAF 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5576.13890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT3_ECTSI8.390e-9777.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9VT45_9STRA1.020e-2945.86Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U0F263_9STRA1.130e-2742.11Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2Y0S9_9STRA2.640e-2648.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UA53_9STRA1.050e-2552.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EU98_9STRA5.280e-2539.47Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2BZB6_9STRA5.550e-2548.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RFI5_9STRA4.130e-2347.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BU34_THAPS4.510e-2342.86Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5KC14_FISSO7.690e-2346.21Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5576contigL-elsbetiae_contig5576:1965..7351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue5.5e-81
Seed eggNOG ortholog2880.D8LGT3
Hectar predicted targeting categorychloroplast
EggNOG OGs2C0DF@1,2S41X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005130.1
Exons7
Model size1424
Cds size666
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.654183-UTR-L-elsbetiae_contig5576:1964..19911622816589.654183-UTR-L-elsbetiae_contig5576:1964..1991Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 1965..1991 +
1691683668.2135565-UTR-L-elsbetiae_contig5576:1964..19911691683668.2135565-UTR-L-elsbetiae_contig5576:1964..1991Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 1965..1991 +
1622816589.7569017-UTR-L-elsbetiae_contig5576:6620..73511622816589.7569017-UTR-L-elsbetiae_contig5576:6620..7351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 6621..7351 +
1691683668.2997537-UTR-L-elsbetiae_contig5576:6620..73511691683668.2997537-UTR-L-elsbetiae_contig5576:6620..7351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 6621..7351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.6694887-CDS-L-elsbetiae_contig5576:1991..20971622816589.6694887-CDS-L-elsbetiae_contig5576:1991..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 1992..2097 +
1691683668.2272232-CDS-L-elsbetiae_contig5576:1991..20971691683668.2272232-CDS-L-elsbetiae_contig5576:1991..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 1992..2097 +
1622816589.6801767-CDS-L-elsbetiae_contig5576:2358..24151622816589.6801767-CDS-L-elsbetiae_contig5576:2358..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 2359..2415 +
1691683668.236659-CDS-L-elsbetiae_contig5576:2358..24151691683668.236659-CDS-L-elsbetiae_contig5576:2358..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 2359..2415 +
1622816589.6928952-CDS-L-elsbetiae_contig5576:3274..33781622816589.6928952-CDS-L-elsbetiae_contig5576:3274..3378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 3275..3378 +
1691683668.246471-CDS-L-elsbetiae_contig5576:3274..33781691683668.246471-CDS-L-elsbetiae_contig5576:3274..3378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 3275..3378 +
1622816589.7039866-CDS-L-elsbetiae_contig5576:3995..41151622816589.7039866-CDS-L-elsbetiae_contig5576:3995..4115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 3996..4115 +
1691683668.2576122-CDS-L-elsbetiae_contig5576:3995..41151691683668.2576122-CDS-L-elsbetiae_contig5576:3995..4115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 3996..4115 +
1622816589.7174613-CDS-L-elsbetiae_contig5576:4803..49371622816589.7174613-CDS-L-elsbetiae_contig5576:4803..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 4804..4937 +
1691683668.2731416-CDS-L-elsbetiae_contig5576:4803..49371691683668.2731416-CDS-L-elsbetiae_contig5576:4803..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 4804..4937 +
1622816589.7287588-CDS-L-elsbetiae_contig5576:5724..58001622816589.7287588-CDS-L-elsbetiae_contig5576:5724..5800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 5725..5800 +
1691683668.2817755-CDS-L-elsbetiae_contig5576:5724..58001691683668.2817755-CDS-L-elsbetiae_contig5576:5724..5800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 5725..5800 +
1622816589.7418423-CDS-L-elsbetiae_contig5576:6551..66201622816589.7418423-CDS-L-elsbetiae_contig5576:6551..6620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 6552..6620 +
1691683668.2906525-CDS-L-elsbetiae_contig5576:6551..66201691683668.2906525-CDS-L-elsbetiae_contig5576:6551..6620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 6552..6620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5576.13890.1prot_L-elsbetiae_contig5576.13890.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5576 1992..6620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5576.13890.1

>prot_L-elsbetiae_contig5576.13890.1 ID=prot_L-elsbetiae_contig5576.13890.1|Name=mRNA_L-elsbetiae_contig5576.13890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MKSAFLAAVLSLLSAASIEGFVANMPVHTACSSSRASAMQMSAEPQTRQA
VLQQGLAGVLSLAGVAAVSSQPASAGGLSPVSNGDKWAGVLDPRSAVKDA
DKMASDSVKKDLDALKKYQTATKEITAMLAKDSQADVLPKVKESFKFAEF
RQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELANASKMKPDIPRSERKI
EILNKKLQKLDQAFVSLNAFL*
back to top

mRNA from alignment at L-elsbetiae_contig5576:1965..7351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5576.13890.1 ID=mRNA_L-elsbetiae_contig5576.13890.1|Name=mRNA_L-elsbetiae_contig5576.13890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5387bp|location=Sequence derived from alignment at L-elsbetiae_contig5576:1965..7351+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAAAACTCTCCACCTCCAAGCTACAATGAAGTCCGCCTTCCTCGCCGC
CGTGCTCTCTCTTCTGTCAGCAGCCTCGATCGAAGGCTTCGTGGCAAACA
TGCCCGTGCACACGGCCTGCTCGTCGAGCAGAGGTGAGAGAAACATGATG
ATTCATGATTCATGTCCACGTCATGAGAGCAAGAGCGATACATGCCTGGC
ACTCCAATTGCAAGGTTATTTATCGTGCAAGAGCAATGGGGTAGTGTAGA
CTTGTTGCATTTGCGCATGGTTGCGACGATCCTACTGCGGTGTGCGTGGA
CGTCGTCCTCAGCGAAAACGTGCACAACGAAAAAAACAGCTGTGTCTTTG
TTCCCGTTTTCTCTCGTCTGCCCTGTGTTCCACTCCGCTCGCAGCTTCTG
CAATGCAGATGAGCGCGGAACCCCAAACACGCCAGGCCGTCCTCCAGCAA
GGTCAGTGCCAGCACCGTTCATGGTACAGTGTCGTGATACTGTGTCTTGC
TTGGGGTTCATGCACAAGAGAGTTACTGCGTTATCCTTCCGCTCCCACCC
GCTGCAGACAACAGAGTCGATGACGACGGGCAGTTCACGCGAAACGCGTA
CATACAGTAGCTCTCACGTGCGCCGACACCATCCTCGCGGCTAGCGGTAA
CGCCGAGGATAATGTACCAGCGTTCACGCAGCACCTTGATAATGCTGCGG
GCTTACGTTACGCGGTCACTTTTTAGCTAGAAGTCCTGATGGCATTTCAC
GCTGTCACACTTGCGGCAATCGCGTCTCTTATGTGTGTGAAAAAAAATAG
AAATTGCGTTGTGCATTTCGCCGCTCGTCACAAACAAACCACATCAGCTC
CGCCGCATAGCTGGTGGGAGATATTTCTTTTTGTCACCACGCCGTGTGTG
CCTGATGATTCTGTTGTGCTCGATCATCTGGATGCAACAAGTAATGTTCC
TATATACTGCTACTGTTCCACCATCACCAAGTTCAGAGTTCGGCATGGTG
CCACCCCCTCAGGCAGGAAGGGCACACACAGGCTCTGAGGAACGGGCGAA
GTTCACTGTTTTTGTGATAAGTTGCCCGCCTCTATGCTCCATATTGCTGT
TCTGAAATGGCCTCCCCCAACCTTTGCATGTAATTGAACGTCAGTGCATC
GTTTCTTTGGCATCTAAATGCTCTTACCACTTTCACTGTTGTGCGGGATA
AATACACATGTACAAACACAACACCACTCACACATGATCTCTCTTTCTTC
ACAGACTCACTCGTACCCATGTGCCGCTGCTGTCCCGTGTGCATCTGCCG
ACGGCAACAGGCCTGGCCGGCGTTCTCTCCTTGGCCGGCGTCGCGGCTGT
TTCGTCTCAGCCCGCGTCCGCCGGTGGCCTCTCTCCCGTCAGCAACGGCG
ACAAGTGGGCCGGGGTGAGATTCTCCCTCCCAGCAGACTCCTCTAGACTA
GACGTGCACATTTCAGCGTGCAGTCAAAGACGCAACAAACGTACTTATGT
ATGTATGTACATGGCACGTGTGCGACCGAAAAACCTTCACGATACCCTCC
TATCCATGAAGTACTCTTGTGGCTGCGTGGGCGTGCGCGGTGGGCGTCCG
TCCCTGCGTGGGAGCTGCATCGAGTGCCGGAAGCAAAGGGCGGGGGAGGT
GTCTAGTGGGGACAGCGATATACGGCACAGGGGCAATTTTTCTCTCATAT
GTATCTCTCTTACTATGTCGCAGCAGCAGCGGGGGCGAAGTGTCTCGTGG
GGACAGCGATAAAACAGCAATGGGGCAATTTTTTCTCTTATCTCTCTGTT
ACCATGTCACAGGAGCAGGTAAATAAGTAGATTATTACAGCCAATCGCGC
AGCAAGCACCAAAAGCGATTTTCGATTTTCACCACATTTCCCACACATTT
CCCCCCATCCAACACCGATACCGATGCATGGGTCACTCGGGGGATATATA
TTTATTTACTCCATCTTGAATGCCTTCCTCATTTGAAACCCGTGCCAAAA
TATGTTGTGTCTCCCTTGTGCGATGGAAAAGGTTTTGGACCCCCGCTCGG
CCGTGAAGGACGCAGACAAGATGGCATCGGACTCCGTCAAGAAAGACCTC
GACGCGCTCAAGAAGTACCAGACCGCCACGAAGGAGATTACCGCGATGCT
GGTACGACCCGCTCTTTTTTGCTCTCTGCCTTCCTTGTGCGCGCGAATGA
CGAAACGTCAACCTTACCGTTTGCCTCTCGAGGGGGGGGCTGGCAGACTG
GTGTGGACCTGCCCCCGCGGTGGTTATTTCGTAGGACCGCCCCCTCTGTC
TCTTGTCTGTGGTTGGACGTCATCCAAAGCGCTCACGATGATTCACTTCC
TTGATTTTTGATTTTTCGCGTGTGCCGGCTCATAACTCGCTATGGGTTGA
GAGTTGAGAACTGTCGAGTTCGATTTGTTCTTGTCCAAAAGGGTATGATG
GCGAACGAGATACGAATAGAGAGGTAGGGGGACGAGGGTACAAAGAACTG
AAAATAGGAGTGTGTAATTCCACAGCTCGCCCTCTCGCGCCAATCTGTCA
AGGGAACACAAAGCATGCTGGGCGAGAGTTTACACATGCGTCCGGTAGGA
ATAATTAGCCACATGTGATTTCGTGTTTGATCGAGGCCTCTGCTCTCTTT
TGTTGCCCCGGATGTGCTTTGTTGCCCGGGGTGAGTATTGTGTCCCCAGA
TGGATGTTTTCTTCTAGGGCAAACGGCAGGCTACACACACACGCCAAAAT
TGGCACGCCACAACGTTTCGTGTTTTTTGTTTTTTACAATTTCGGGCTCG
TGGTCGAACGAACTGCTGTACATTCACGCGCTTGCGCAGGCCAAGGACTC
CCAGGCGGACGTGCTCCCCAAGGTCAAGGAGAGCTTTAAGTTCGCGGAGT
TCCGGCAGGTGTTGAACGAGGTGAACGACGTCTTCGACGAGGATACCCAG
AGGGGCACCGACCTCATCATCCGGTAAGCCTTAGCTTTGCTGTCGATGTT
CCGGTGGTGGTGGTGAAAAGGTTGTTGCCGTCGCTGCTGGTTTTGTCTTT
GTTGTCGTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGTTGGGGCT
AATGAGCTCTCTTCATTGGAGAGCAAGGGTAATAACGGGAGTAGCTTGTG
CGTTCTCGGCGTGTGCTGGTTTATGTCCCCATGTTTGTCGTGGAGAGGCG
TGTTGTGGGTGAGTTTAGAGGCGAAGAACGAAAGTGTGTCTCCGTCTCTG
GCGTGTGTTCGGAGGATAGCCAGACCGGTATTCAATGAACCTCGGTCATG
CGGCATAAATACACTCGAAAGTGGCCTCCTCCTACGACAGACAGGGTCAA
GGCAGGAGTACATGCGCACTTTGGATTGTCATCACTCGTTTATATCTCGA
AATAAACATGAGTGGCAGTGTATCTCTTTTACTTCAATACCGTTCAACGG
GATCGTATAACCCAGAGGGGAGTTGGGGACGGCAGTTTTCCAGACAAGCT
TGTCTGGTGACCACTTCTCTGCGGAGAGTGTTGCTCCTAGCGTCTTGCCG
AATGTTGTTCGAAGCGTGTGCGATATCCGCTCGTGTTGCTGCCTTGGTGA
GATGTGTTGCTTTGCAGGATACGACGTTTGTTTGGTAGTTCTTCTCCCGA
TCACGGAGACAAAAGAAACACAACGGGTTGCGTTTTTGGTACATCCATGT
TCGTGAATAATTCTTACAGTGCCCTCCTTCAACGTATTCGGCCAAACCAA
ATCTCGGCAGAAACATGCTCCAGGACGCCCTCGAGCTTGCGAACGCGTCC
AAGATGAAGCCAGACATCCCTCGCTCGGAGCGCAAGGTAAGCAACGACCC
GAGGAACCTCCTAGTATGTATGTAGAACCAGTTGCACAGCAGCCCCACTA
GCTTCAACGAAGCTCGGCCGCCTTCGAGGTGACGCCCAGACAGAAGCGGG
GTGGATCATCGGAGGAATGTAGGTGCCTATCATACCCAAGGACATTCTGT
GACGGTGACATTCCATGTCCGGCCGGAGCATACCCTCTTGTAGTTCTCGC
CCTCTTGCTGCTGTTGGTGTTGACTAGTGGCGTTGTCTCGACTGTTGCAG
ATGGTGGTGGAGCTGGTGTTTGCTGCCGTTGTCGTAACTTCCTTTGGGCT
GTTTCACCTGACAGTTAGTCCCCGGGTGACCGTGGCTGCATCACGTCTGA
ACCGCTGAGAAAAGTCTCGCGAATACCACGATGCTTTAGAACGCGCACGG
CTAAATAAACCGCCCCTGCTTTTGGCTGGTAAATACTGATCCCTCAAAAG
ACGCTGCTGTTTTGGCCTCTGGGTCACTCACTAGTTTGTACTGGTGGTGC
ATGGCTTTGAAGAGACCATTGAGAACGAAATATATGATCGGAATGTTTTA
CGGGGAGGGTGTGGCATAAATACGGAAACCACGCGACGAAGCACTCGGAT
ATTTGGAAGGGGGCTGGCTGCATCAAGGACATACGACAAGAGTTAAGAGT
TGCTCATAGCGCCCCAGCTGACCACCGCAAGCAACGGCCCACCCACCCAC
CCACCCACCCCGGCATGACTTTTGCTTGTTTTCGCAGATCGAGATCTTGA
ACAAGAAGTTGCAGAAGCTTGACCAGGCGTTCGTGAGCCTGAACGCCTTC
CTCTAGATCTACAAGGAAATATTGGCGGGGCGATATAGACAGCGGTGCTA
CTGCTGTGATGGTACCGAGGGGGGGGGGGGCTCCATGAGACCTAGGTCGG
AACTGTTGGGTTTTATCTTGGGGCTAGAATAGAAGCACGAGGTGCTCGAA
TGTTCCGCCGCCACTGCTGCTGGAGTGTAAGTGCATCTTCCTCCGATGAT
AACTTTGTGTTGGTGGCTGGTGATGGTGTTTGTTGAGCATCTGCTGGCGA
GGCATCTTGCGCAAGTGTCTCAGGCACAGGTACCGAGCGTAGTAGCCAAA
CAACTCCAAAGACGAAAACGGAGTCTGATGAGGTAGTTGGCATGCACGCG
TGCGTGTCTCTCTGCAGCGGGGCCGTGCGCGGATGAATAGTAAGTTGCGT
TTTTTTCGTTTCGCTCTCCGCGAAGGGGCCGGTGTATGATGTACTTCCCT
CCCCCCCTCCCTCCAAAAAGCTCAAATAGTCGGGGGCTGAGAGAGAACAC
CATCCAGCAGTTCTTGCCGCTTTCTGCATGGGCAATCGGCTCTTTGGAAC
CGGGGCGGGGCGGACACCAGCGGCTTAAATGGCCTCACAGAGTACCGTCG
TGCTCGAAAGTGCCGAGGGGGTATCGGCGTCGCTGCTGAAGTTATAGCCG
TGTTGTTTGTTTTGTACCACAGTTTACGTCATGGCTAGCTAGATAAATCG
AGTGCTTGTGTGTGTAGGGGAAGAACTGGCCGCATGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5576:1965..7351+

>mRNA_L-elsbetiae_contig5576.13890.1 ID=mRNA_L-elsbetiae_contig5576.13890.1|Name=mRNA_L-elsbetiae_contig5576.13890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig5576:1965..7351+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCCGCCTTCCTCGCCGCCGTGCTCTCTCTTCTGTCAGCAGCCTC
GATCGAAGGCTTCGTGGCAAACATGCCCGTGCACACGGCCTGCTCGTCGA
GCAGAGATGAAGTCCGCCTTCCTCGCCGCCGTGCTCTCTCTTCTGTCAGC
AGCCTCGATCGAAGGCTTCGTGGCAAACATGCCCGTGCACACGGCCTGCT
CGTCGAGCAGAGCTTCTGCAATGCAGATGAGCGCGGAACCCCAAACACGC
CAGGCCGTCCTCCAGCAAGCTTCTGCAATGCAGATGAGCGCGGAACCCCA
AACACGCCAGGCCGTCCTCCAGCAAGGCCTGGCCGGCGTTCTCTCCTTGG
CCGGCGTCGCGGCTGTTTCGTCTCAGCCCGCGTCCGCCGGTGGCCTCTCT
CCCGTCAGCAACGGCGACAAGTGGGCCGGGGCCTGGCCGGCGTTCTCTCC
TTGGCCGGCGTCGCGGCTGTTTCGTCTCAGCCCGCGTCCGCCGGTGGCCT
CTCTCCCGTCAGCAACGGCGACAAGTGGGCCGGGGTTTTGGACCCCCGCT
CGGCCGTGAAGGACGCAGACAAGATGGCATCGGACTCCGTCAAGAAAGAC
CTCGACGCGCTCAAGAAGTACCAGACCGCCACGAAGGAGATTACCGCGAT
GCTGGTTTTGGACCCCCGCTCGGCCGTGAAGGACGCAGACAAGATGGCAT
CGGACTCCGTCAAGAAAGACCTCGACGCGCTCAAGAAGTACCAGACCGCC
ACGAAGGAGATTACCGCGATGCTGGCCAAGGACTCCCAGGCGGACGTGCT
CCCCAAGGTCAAGGAGAGCTTTAAGTTCGCGGAGTTCCGGCAGGTGTTGA
ACGAGGTGAACGACGTCTTCGACGAGGATACCCAGAGGGGCACCGACCTC
ATCATCCGGCCAAGGACTCCCAGGCGGACGTGCTCCCCAAGGTCAAGGAG
AGCTTTAAGTTCGCGGAGTTCCGGCAGGTGTTGAACGAGGTGAACGACGT
CTTCGACGAGGATACCCAGAGGGGCACCGACCTCATCATCCGAAACATGC
TCCAGGACGCCCTCGAGCTTGCGAACGCGTCCAAGATGAAGCCAGACATC
CCTCGCTCGGAGCGCAAGAAACATGCTCCAGGACGCCCTCGAGCTTGCGA
ACGCGTCCAAGATGAAGCCAGACATCCCTCGCTCGGAGCGCAAGATCGAG
ATCTTGAACAAGAAGTTGCAGAAGCTTGACCAGGCGTTCGTGAGCCTGAA
CGCCTTCCTCTAGATCGAGATCTTGAACAAGAAGTTGCAGAAGCTTGACC
AGGCGTTCGTGAGCCTGAACGCCTTCCTCTAG
back to top