mRNA_L-elsbetiae_contig5573.13886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5573.13886.1
Unique NamemRNA_L-elsbetiae_contig5573.13886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: A0A6H5L564_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L564_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 2.660e-75
Identity = 163/234 (69.66%), Postives = 183/234 (78.21%), Query Frame = 3
Query:   93 RGSRRHFSLDLNV---GGLHSLNRARENHSTSTRELAALMSNASISQLARMDGDVEVDIDPTNAEND-ALAVENGSLGGSMS-------------SLSGVQLSSFNSTWSSSQPRSRDASFEAEGAMTPSPRSRKGSMGGDSSSPSQILFTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLKGIHTLQQQMVMD 743
            RG R+ FSLD+NV   G   S  R  EN ST  RELAAL+SN+SI+++A+MDGDVEVDI+PT+A+ND A+A ENG   GS++               +G+ LS   S  S+SQPRSRDASF  EG MTPSPRSR  SM G+S SPSQILFTHEEIVVLKLLFSLFDRGGKNFITR+DIIAYAEEGGDFAQLKEVD+FMEAIDADTDGKVGLSDYINFAARLKGIH LQQQM  D
Sbjct:  983 RGVRKQFSLDMNVNAGGAQSSAGRVTENKST--RELAALLSNSSITEIAQMDGDVEVDIEPTDADNDIAIAAENG---GSLAVGXXXXXXXXXXXXXAGLDLSIVGSNHSNSQPRSRDASFGNEGMMTPSPRSRNSSMMGESPSPSQILFTHEEIVVLKLLFSLFDRGGKNFITRDDIIAYAEEGGDFAQLKEVDSFMEAIDADTDGKVGLSDYINFAARLKGIHLLQQQMPTD 1211          
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: A0A7S2SBD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBD0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.690e-13
Identity = 39/97 (40.21%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  465 SSSPSQILFTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLK--GIHTLQQQMVMDMT 749
            SS+    +FT  E++ LKLLF++ D+ G   I  E++  YAE+ GD+AQ +E+++ + A+DAD DG++GL D+I FAAR K   +H   Q+++ +++
Sbjct:   92 SSNSGSAMFTAAELLGLKLLFAMMDQDGSEAIDTEELARYAEDSGDYAQSRELESIVAALDADGDGQIGLLDFILFAARRKELSVHYKFQRVINELS 188          
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: D7FVC2_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.720e-11
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  423 TPSPRSRKGSMGGDSSSPSQILFTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLK 707
            +P   +R+G++  D +      FTH EI+ LKLLF+L D+ G  FI    +  YA+E  D+AQ +E++A ++A+D D DGK+GL D+I FAARLK
Sbjct:  979 SPPTLTRRGTLAEDCA------FTHAEILGLKLLFALMDQRGSEFIDGVALEEYADEQDDYAQEREIEACIKAVDVDCDGKIGLMDFICFAARLK 1067          
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: A0A6H5L3W8_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.940e-11
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  489 FTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLK 707
            FTH EI+ LKLLF+L D+ G  FI    +  YA+E  D+AQ +E++A ++A+D D DGK+GL D+I FAARLK
Sbjct:  906 FTHAEILGLKLLFALMDQRGSEFIDGVALEEYADEQDDYAQEREIEACIKAVDVDCDGKIGLMDFICFAARLK 978          
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: A0A7S1UJT8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJT8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.930e-9
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  477 SQILFTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLKGIHTLQ 725
            SQ+LFT +EI+ LKL+FS FDR G + I+ E++  +A + G +   +E    MEA+D + DG + + D+++FAA +K  +T Q
Sbjct:   25 SQVLFTEDEIITLKLIFSSFDRDGNDEISVEELEYWAGDRGAYDAKEEAGVIMEALDHNRDGIIDMFDFVSFAAFMKDNYTHQ 107          
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Match: A0A4D9CPK7_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPK7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.630e-8
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  486 LFTHEEIVVLKLLFSLFDRGGKNFITREDIIAYAEE----GGDFAQLKEVDAFMEAIDADTDGKVGLSDYINFAARLKGIH 716
            +FT  EIV L+L+F+LFD  G +F+   ++  YAEE    GG  A   + +  +  +D D DGK+GL D+I FAARLK +H
Sbjct: 1840 IFTAGEIVTLRLIFALFDDNGDDFLEASELERYAEEDEEVGGGGASRTQAEECVRLLDGDGDGKIGLLDFICFAARLKELH 1920          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5573.13886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L564_9PHAE2.660e-7569.66Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S2SBD0_9STRA8.690e-1340.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FVC2_ECTSI3.720e-1145.26Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5L3W8_9PHAE4.940e-1153.42Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S1UJT8_9STRA1.930e-940.96Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CPK7_9STRA8.630e-844.44Serine/threonine-protein phosphatase n=1 Tax=Nanno... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5573contigL-elsbetiae_contig5573:4506..10563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FVC2
KEGG koko:K04348,ko:K04460
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04728,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04728,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent protein serine/threonine phosphatase activity
EggNOG OGsCOG0639@1,KOG0375@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Ec32 ortholog descriptionSerine/threonine protein phosphatase catalytic subunit with Zn finger and EF-hand domains
Ec32 orthologEc-11_005950.1
Exons6
Model size2343
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5573.13886.1prot_L-elsbetiae_contig5573.13886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5573 4928..9074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.2279646-UTR-L-elsbetiae_contig5573:4505..46501622816589.2279646-UTR-L-elsbetiae_contig5573:4505..4650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 4506..4650 +
1691683667.9506044-UTR-L-elsbetiae_contig5573:4505..46501691683667.9506044-UTR-L-elsbetiae_contig5573:4505..4650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 4506..4650 +
1622816589.241572-UTR-L-elsbetiae_contig5573:4872..49271622816589.241572-UTR-L-elsbetiae_contig5573:4872..4927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 4873..4927 +
1691683667.9636037-UTR-L-elsbetiae_contig5573:4872..49271691683667.9636037-UTR-L-elsbetiae_contig5573:4872..4927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 4873..4927 +
1622816589.3203256-UTR-L-elsbetiae_contig5573:9074..105631622816589.3203256-UTR-L-elsbetiae_contig5573:9074..10563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 9075..10563 +
1691683668.0354426-UTR-L-elsbetiae_contig5573:9074..105631691683668.0354426-UTR-L-elsbetiae_contig5573:9074..10563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 9075..10563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.2534444-CDS-L-elsbetiae_contig5573:4927..49601622816589.2534444-CDS-L-elsbetiae_contig5573:4927..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 4928..4960 +
1691683667.9740086-CDS-L-elsbetiae_contig5573:4927..49601691683667.9740086-CDS-L-elsbetiae_contig5573:4927..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 4928..4960 +
1622816589.2644436-CDS-L-elsbetiae_contig5573:5751..59311622816589.2644436-CDS-L-elsbetiae_contig5573:5751..5931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 5752..5931 +
1691683667.984997-CDS-L-elsbetiae_contig5573:5751..59311691683667.984997-CDS-L-elsbetiae_contig5573:5751..5931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 5752..5931 +
1622816589.2767627-CDS-L-elsbetiae_contig5573:6917..70551622816589.2767627-CDS-L-elsbetiae_contig5573:6917..7055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 6918..7055 +
1691683667.9956944-CDS-L-elsbetiae_contig5573:6917..70551691683667.9956944-CDS-L-elsbetiae_contig5573:6917..7055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 6918..7055 +
1622816589.2880383-CDS-L-elsbetiae_contig5573:7633..77201622816589.2880383-CDS-L-elsbetiae_contig5573:7633..7720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 7634..7720 +
1691683668.0070822-CDS-L-elsbetiae_contig5573:7633..77201691683668.0070822-CDS-L-elsbetiae_contig5573:7633..7720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 7634..7720 +
1622816589.304864-CDS-L-elsbetiae_contig5573:8858..90741622816589.304864-CDS-L-elsbetiae_contig5573:8858..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 8859..9074 +
1691683668.0244079-CDS-L-elsbetiae_contig5573:8858..90741691683668.0244079-CDS-L-elsbetiae_contig5573:8858..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 8859..9074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5573.13886.1

>prot_L-elsbetiae_contig5573.13886.1 ID=prot_L-elsbetiae_contig5573.13886.1|Name=mRNA_L-elsbetiae_contig5573.13886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MSNASISQLARMDGDVEVDIDPTNAENDALAVENGSLGGSMSSLSGVQLS
SFNSTWSSSQPRSRDASFEAEGAMTPSPRSRKGSMGGDSSSPSQILFTHE
EIVVLKLLFSLFDRGGKNFITREDIIAYAEEGGDFAQLKEVDAFMEAIDA
DTDGKVGLSDYINFAARLKGIHTLQQQMVMDMTLSEPLDEGAPAAVVSEP
TEPSEPSEPADPRGYGE*
back to top

mRNA from alignment at L-elsbetiae_contig5573:4506..10563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5573.13886.1 ID=mRNA_L-elsbetiae_contig5573.13886.1|Name=mRNA_L-elsbetiae_contig5573.13886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6058bp|location=Sequence derived from alignment at L-elsbetiae_contig5573:4506..10563+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGGTGTTCCGAGAGGGACAAGCGGAGGCGGGGGAGGGAGATGGGGAG GGAGGAGAGGACGATGATGACCCGTCCCCGGCTCCGCTGTCGCGTGGGTC TCGGCGGCATTTTTCTCTCGATTTGAACGTTGGCGGTCTTCACAGGTAAA TTGCGGCGTAGTAGGTGGCGTGTGCGTGTGTGTGTGTGTGTGTTTCGTCT CGCTGTGGAGTGAAGAGGGATCATTGGATTGATTTTGCCCCGCGTGTATG TATGTATCTATCTGCGTGGTTCTTTTACGCTGATTGTGCAAGTTTGTGTG TTTTTGCTTTTCTTTGCTGCTGCTGCTGCTGCTGCTGCTGCGACTGATAC TGCGACTGCGGCTGCAGTTTGAATCGCGCGAGGGAGAACCATTCGACATC GACAAGAGAGCTGGCGGCGCTCATGAGTAACGCCAGCATCTCACAGCTTG CACGGGTGAGTCTGTGGGCCAGAGGCGGAGTGAGAGGTGGATGTTGTAGA GAGAGAAGGAGTCTGAGTTAGTTTCGCGTGGTTTTGAAGGGAAAAAACGA GAAAGCACCAACTCCGAGGGTCCCGTATGTGATTGATTTGTTTCGTCAAT CGCCACTGAACCCCCTCTCTTGTCCCGGGGGCCCGGGGAACATCGCACGT TTTGATTTTACAAGATACTGTATGTACAACTTCTACATGAATACTTGGAA AATGCAATTCATCATGAAACTGATTCCAATCAATAGCAGAAACTAACTCC AAGGCCGAAACGTCCTTGGGAACTAGGCCAGAGTAGTGTACTTTGAAAAA TACCATGGGGGCAAAGATGGTCACTGGAAAACCAGAGCGTGTCGACATGT ACGAAAGTTTAGGTACGACTTGAACAGTAGTAGTGACATCGGTAGATGCT GCTCAAAACTCGAGATAAATTGTCCCCCAAGTTGATGCAAAGTATTTGAC AAATCTTTCGTTCGTTTTGTTTGTTGTCAAGATCGTGTTCGGTGCGCATG CGTGCATTGCATGCATGCATAAGTTGTATGGGGAAGCGGAGGTGGAACAT CCGGTTTTGTATAAATAAATTCATAGCGTGAATGAATAGGTCGTTAAGAT CGTTCTGGTGCGCGCTTGCCAGCGCGCGCGGCATGGCAAAAGCATGCAGA CGGGCGGGAATGTGGAGTTTGTTTTCAAGTGTATTTCGTTTGTTTGTTGA GATTGTTCCGGCGCACGCACGCACGCACGCACGCACACGCGCACAGATGG ACGGGGACGTGGAGGTGGACATCGACCCGACCAACGCGGAGAACGACGCG CTAGCCGTGGAGAACGGCAGCCTCGGAGGGTCCATGAGCTCGCTGTCGGG CGTTCAGCTGTCGTCCTTCAATTCCACCTGGTCCAGCTCGCAGCCGAGGT CCCGCGATGCGAGCTTCGAGGCCGAGGTGAGATTCGAGATTCGAGATTCG AGATGCGAGATTTGAGATGCGAGATTTGAGATTTGAGATCTGAGATTCGA GATTTGAGAGGCGAGAGGCGAGAGGCGAGAGGCGAGAGGCGAGATCTGAG ATCTGAGATTTGAGATTCGAGATTCGAGATTGAGCCGGCGGCGAGACTGG GCTGCCGTGTGGTATACCGGTGACTGGGCGTGTGGAATCACACCACCACC GGAGAGAAAGTTGGGGGCAGAAAGTAAAAATGAAAGCCCCAGACCTCACC CCGGCCCTGGCGTTCGCCCCCCCCCCCCCTCTGTCCCAAAAGGAGGGAGG GCTCGACCGGGTATGTAGTTAGCTGTCTAGTTGAGTACGGGACCCCCGTA GGTAGTATATTTAGACGTCGGGGGAGAAAACAAAGGGGCTCTTTTCTTCT GTCTCTCGCTTGTGTGAGCGATTCTGACGTCTTTCTTTCGAAGTTTGTTT GTTTTTTTGTTCCTTGGCTGTCGTTTCTTGTTTTTACTGTTGGCATTATT TTTGCTTGCGTTATTTTGTGCAGGCGAGCGAACAGAAGAACGTGTTTGGT GTGTGTGTGTGTGTGTGTGTCTTTTGCAATGGTACGGGTCTGTAGTGTTG TGAACGCCAGTCGGCGTTGTGCCATCTTTGGCGGTGGCCCCGTGGAGGTT TAGTACTACATGCATACATACGTTCACCCGTACTCGAAGCACACGATGCA AAGATACCGGACCAGGATAGAACTTGGCGGAACTGCTGTCAAACACCAGC ACCCGCACACCAGCAAACCAGGTGTGTGTGTGTGTGTGTGTGTGTAGACG CTCGTGTTTGAAGGCACTTCTTGCTGCATAGGTTACATTGTACTCTTCGC CGCGCGTCTGACAAAAACTAAAACTGCCCTGTGCTTCTCACACGCCTGCC TTATCCCCACCCGCGCTCCCATGCCCGTGTCGCGTCATGGTTGCGGTTTT TGACAACAATAGGGCGCGATGACGCCGTCGCCTCGATCTAGAAAGGGCAG CATGGGCGGAGATTCGTCCTCTCCCAGCCAGATACTCTTCACCCACGAGG AGATCGTGGTGCTCAAGCTTCTGTTCAGCCTCTTCGACAGAGGGGGCAAG GCACGTCTGTCTCTTCTGCCTGTCTGCTTGGGTTGAATGAACTTACAAGG ATGAGACTATTGTTGTATTTAGCCGTGAAGATTTATTTGGTACTTTGCTT TGCGTCCGGTGTGGATGCGACGGCTGTGCGTGAAAAGCTGCCAAGTTGTT GTTGCACGCGCACGCGCGCGTGTTTTTTTTTTCTTGGTTCAGCATGGCGG GACTGCTTTCTTGCCTTGCTTTTTTTTTTCTTTACCTATAATGTCGCGTT TTCACCAGTGAAACATACGCGGTAGCGGTAGCGATAGCGATAGCGGTAGC AGCAGTAATATGTCGAGAAAAGTAGACGCTGCTCGTGACAAGGTGGACCT TTTGCAGCAAAATTCACCCGGCAACAACAGCGGAAAACACAACCACGAAG AGAAAAGGAACATGTGTCACCATCAAATCAGCGCGACGACTGACTGACTG ACTGACTCGTGACAAGCCAACCAGCTGGCCAACTGCGTAAATTTGTCGTG AATACATTTACTTACCTTGCGATCTCGGCGATATTTGATGTGATGTGATG TGATGTGATGCAATGCGATGGCGCACAGAACTTTATCACCCGGGAGGACA TCATCGCCTACGCGGAGGAAGGGGGCGACTTCGCCCAGCTGAAGGAGGTC GACGCGTTCATGGAGGTAAGCGAGGCTGAGAACAAAACGACGAAAGTCGT GAGAGAGTGAGATAAAAGTAACACATCTATCTCCTGCTTGCTGGTGGGGC GGGGTGTATGTAGTGTCTTGACATTCCAACGTGTGTGTGTGTGTGTGTGT GTTGTGTTCACATTAAAAACCGTTCCGATCTAAGTATCCAGGACACACCT CCATGAGTGCGTACCATTGTTGCAAATAAATGGTGAACGTGTGGGTAATC CGCAAGAGAAGGAAAAACAAATGCCATGGGGCATAGTTTTTTCCAGAATC GCTCGCCCAGATTCACCCTTGTATAATAACTACTGCAGTATCATGCACAG CAGCACGCCATGGTATATAAGACTCCTAGGTACGAAGTCGGTCGAGGTTT GCCGTCTCCGTTGAGTGTATCGTGGACGCCGTAGCGAGGACAGGTATATT GTTGTTGTTGTTGTTGTTGTTGTTGTTTCTTCACATTAAAAAACGTTCCG ATGTCTCCACCCAGTACCTCCCAATGTCCGTGCTACATATGTGTCTCAAC ACTTGATGCTGTCAATTCCCGTGGTCACAAGCTAACTTATGCCTAAAGGA GGTACACGAATATATCTAATTAGCCCTAATTACGGGGGGGGGGGGGGGGA GAACTGCTCTAAAAAATAGGCACTGCGGATTGCCCGGCGAACATACATCC ATACGACCGTATAGGTCAGCGGCACTTGTTGTTGATTCTCACATTAGCTC TGTAGTCCAAAAAGTATGGTAGCATTGCTGTAAATGGTTAGGCATCTGTT CTTGACGTGAAAGTCGACGCATCCAAAAGCGATCCCACCCAAACCACGTG TATGTAAAAGTACATCCGTACATGTATGTGCGCATAAATATTACCCGCAC GATGTATAAATAGAGAGTCATCTATGTATTTCGAACCGTTTCTGTTGCTG TTCGCCATGTACAACTGCCGTAGTGGTTCTCTTCTCGCGCACATCCACAG GCACGTTGTCTGTTTGTTTGCCAAGGCTATCGATGCGTCCATCGCGCCTG GGACCCCCGTTTCTATGTGCCACTACTGTTATCTACAACAGCCGTGGTAG GTCCCTTTTATTCACACGTCCCCAACACACATGTCTGTTTTATGCACCCC CAGGCGATCGATGCGGACACGGACGGGAAGGTCGGGCTATCGGACTACAT CAACTTCGCCGCGAGGCTCAAGGGCATCCACACTCTGCAGCAGCAGATGG TGATGGACATGACCTTGTCGGAGCCCCTCGACGAGGGAGCCCCCGCAGCT GTCGTGAGCGAACCGACGGAGCCATCGGAGCCGTCAGAGCCGGCGGATCC GAGAGGGTACGGAGAGTGAAATCGAAGGAGGGGAAGCAATCCGCGGCATG TCTGAGCGCACCGCACCGCACGCACGCACGCACAAAGGACCCGCACACCG GAGAGTGAGACAAACGGAGGGCAAGGAAACGGGTTAGGTTCTCGACTCTC GACTGGCCGAGGCGGTTCGGTTCGAAAGCGGAACCTGTTTTTCGGGCCCG GATTTGACGCCCAAAGGAGAGACGCCTGTCTCTGCACTTCTTCTTGTTAT TCTTCTTCAATCCATGAGATATCGCTTGTGGTTCCGAGCGAGAGAGAGCT CGAAAGGTTCGAGCGAGAGAGCTCGATGATCCTTCTCCCCGTCACGAGGA AAAACGTAACGGGACGGAGACTACGAAGATTGTGGAATTATTTTTACCGT ATCGCAGCAGCGGCAGGCAGTCCGACAAAAGAGACGAAACGGCGGGAGTG AAGCTGGTATTGAACGGCTGTCGACCTTGCAGCATTGTTGAGTGGAGTGT GTAGAACCATTGCGTTGTCTACCGTCGTTAGGAGAGAGGGTGGAAGTGTT TTATTTTATTTTCGGACCCGTGTTGCTGGCTCTCGCTCTCGAATACCGAC GACGAGAGCGGTGGTGGGGCGCGCGCCTATGTCCAGGTGGGTCTTCGCTG TGAGATTGCTGTGCCTGTGGGCAGACGCGTCGGCTGTGGCGTTGCACCTG CCTGTGGTCTGGTGTTGGTACTGTCTGTGTCGTATGCGACGACGGAGTTT GGACTACATAGATTATCACGTCGCGAGATGCTTGCAGCTCGGGAGCGCCT TTTACGTACTCAACATCGTGTTTTTTGTTTGTTTAGTGAGATCCCATCTT TGGTTCTAAACCCGCCAGCTTTTTGTCGTGCGTGCGCGCTTCTCATTGTG TGTGTGTGTGTGTGTATGTGTAACTGTCTGTTTGTCGGTAAGACGTGTAG TCTAGCGGTAGAGTTTAGTATTTAGGGGTAGGTACAGAGAATGGGGGCTA ACCCGTGTTTGTTCTGTTTCTGCTCGGCGGCACGGAGGGGGTGGTAAAAG ACCGCGATAGAAGATACCAGGTAGGCATGCAATTGGCGCTTTATTTTAGC CACCTTTTTCTGTCTTGTTGAGGTTTTGCCACCCGGAGAAGACCTGTACC CTTTTCGCTGTATGCGAGGTACTTACATAATTGGTGTCATTTGCTGCACA CGTACGTCTTATTTTGTTCTTAATGATGTTTTCTTTTTATCAGCGGTGTG CCGCTTTTCTGGCGGTGGCCGACTCGTAACTGGCTTGGCAGGCATAGCCC ACTGATCCAGGGGTGTGTTGTGTTGCAGAAAAGCCGCTTTGGGTTTCGAA CGAGACAACGTTTATCTTTGGAATCGGTAACTCGCCTCTTTCACGCAGCC CGTCTTCTGGGGGAGGACAATCGAGGTTCGCGACTGTCTGTGTGAAGTCA GCCACAGCGGTCTACCTCCCCCCCCGCCCCCCCCCCGCCGTGGGGGACTT TTCTTCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5573:4506..10563+

>mRNA_L-elsbetiae_contig5573.13886.1 ID=mRNA_L-elsbetiae_contig5573.13886.1|Name=mRNA_L-elsbetiae_contig5573.13886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig5573:4506..10563+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTAACGCCAGCATCTCACAGCTTGCACGGATGAGTAACGCCAGCAT
CTCACAGCTTGCACGGATGGACGGGGACGTGGAGGTGGACATCGACCCGA
CCAACGCGGAGAACGACGCGCTAGCCGTGGAGAACGGCAGCCTCGGAGGG
TCCATGAGCTCGCTGTCGGGCGTTCAGCTGTCGTCCTTCAATTCCACCTG
GTCCAGCTCGCAGCCGAGGTCCCGCGATGCGAGCTTCGAGGCCGAGATGG
ACGGGGACGTGGAGGTGGACATCGACCCGACCAACGCGGAGAACGACGCG
CTAGCCGTGGAGAACGGCAGCCTCGGAGGGTCCATGAGCTCGCTGTCGGG
CGTTCAGCTGTCGTCCTTCAATTCCACCTGGTCCAGCTCGCAGCCGAGGT
CCCGCGATGCGAGCTTCGAGGCCGAGGGCGCGATGACGCCGTCGCCTCGA
TCTAGAAAGGGCAGCATGGGCGGAGATTCGTCCTCTCCCAGCCAGATACT
CTTCACCCACGAGGAGATCGTGGTGCTCAAGCTTCTGTTCAGCCTCTTCG
ACAGAGGGGGCAAGGGCGCGATGACGCCGTCGCCTCGATCTAGAAAGGGC
AGCATGGGCGGAGATTCGTCCTCTCCCAGCCAGATACTCTTCACCCACGA
GGAGATCGTGGTGCTCAAGCTTCTGTTCAGCCTCTTCGACAGAGGGGGCA
AGAACTTTATCACCCGGGAGGACATCATCGCCTACGCGGAGGAAGGGGGC
GACTTCGCCCAGCTGAAGGAGGTCGACGCGTTCATGGAGAACTTTATCAC
CCGGGAGGACATCATCGCCTACGCGGAGGAAGGGGGCGACTTCGCCCAGC
TGAAGGAGGTCGACGCGTTCATGGAGGCGATCGATGCGGACACGGACGGG
AAGGTCGGGCTATCGGACTACATCAACTTCGCCGCGAGGCTCAAGGGCAT
CCACACTCTGCAGCAGCAGATGGTGATGGACATGACCTTGTCGGAGCCCC
TCGACGAGGGAGCCCCCGCAGCTGTCGTGAGCGAACCGACGGAGCCATCG
GAGCCGTCAGAGCCGGCGGATCCGAGAGGGTACGGAGAGTGAGCGATCGA
TGCGGACACGGACGGGAAGGTCGGGCTATCGGACTACATCAACTTCGCCG
CGAGGCTCAAGGGCATCCACACTCTGCAGCAGCAGATGGTGATGGACATG
ACCTTGTCGGAGCCCCTCGACGAGGGAGCCCCCGCAGCTGTCGTGAGCGA
ACCGACGGAGCCATCGGAGCCGTCAGAGCCGGCGGATCCGAGAGGGTACG
GAGAGTGA
back to top