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Homology
BLAST of mRNA_L-elsbetiae_contig5567.13877.1 vs. uniprot
Match: A0A6H5KYI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI0_9PHAE) HSP 1 Score: 242 bits (617), Expect = 1.360e-69 Identity = 203/469 (43.28%), Postives = 246/469 (52.45%), Query Frame = 2
Query: 224 PCLSAGQKTRAVQLLIVWVCWVFFQIEGGSPGTSAILFSLAVYLAEGPRSKRRPGKSPRKCMRRDALSWAEDGSSAASLELTANLPHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAXXXXXXXXXXXXKPPEPPASSAEQTSFEAAMTRLAGAAEL-GTEALIYVRRADVAEMVDVLMDHARSPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRRLGSPA--VDGPRGGGGRSGRRVASASPS-SQVAPTPTVSGGRALFQDG--MTPPLRDVTRTNSSSTRVTVRARSPXXXXXXXXXXXXXXXXXX-RRVRGLQEXXXXXXXXXXXXXXXXXXXAVPACSPACVVGMTPIALTKNSGAPLAAAGGVP--------------STEEKRKFT-GPSVLETKVGENVAAAAXXXXATPREAKIKYTPVQRTAGKREGQDFDDFWSSGWG 1564
P S G++ + +QL+IV VCW+F QIEGGSPGT+A+LF+LAVYL P + RP ++P K DALS AE+G+SA S E+ ANL TGEL + FL + APGT+ P ASSA FE A+TRLAGAA GTE LIYVRRADVA +VD LMD R+P GPTVTSPA ARL LVRRS R+D P G GRRA SPV G+R AF R G P RR SASPS S+ APT GG+ALFQD MTPP R + R + +ST++T R RSP RR+RG E SP MTPIAL KN+ APL+AAG + ST+EK++ P L T + ++ A+ R+ KI+ P K E DFDDFWSSGWG
Sbjct: 9 PAWSKGEQAKVLQLVIVSVCWLFLQIEGGSPGTTAVLFTLAVYLV--PTKRHRPSRNPPKSFWPDALSSAENGNSARSCEIAANLLLTGELEA----------FLDKSSDGVRRQAPGTSTQESAPAAAT----PNNTASSARGNPFEEALTRLAGAASTCGTEPLIYVRRADVAVIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKD-PRG-GRRALSPVRRGERAALAFHR-GRPGRGXXXXXXXXXXXXRRAVSASPSMSRGAPTIAPPGGKALFQDSNMMTPP-RVLARPSPASTKITFRPRSPPPPSPSGDGEPVGNSTVGARRIRGGMEGKQHRVLQRVH-------------SPR-AFSMTPIALAKNNEAPLSAAGALVTSGGEGGSQSGVMRSTDEKKQTKLKPPALITTMMQDGCDVTPCSTASDRK-KIRCVPA-----KGEASDFDDFWSSGWG 437
BLAST of mRNA_L-elsbetiae_contig5567.13877.1 vs. uniprot
Match: D8LQL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL1_ECTSI) HSP 1 Score: 107 bits (268), Expect = 6.040e-23 Identity = 96/201 (47.76%), Postives = 108/201 (53.73%), Query Frame = 2
Query: 464 LTANLPHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAXXXXXXXXXXXXKPPEPPASSAEQTSFEAAMTRLAGAAEL-GTEALIYVRRADVAEMVDVLMDHARSPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRRLGSPAVDGPRGGGGR-------SGRRVASASPS-SQVAPTPTVSG 1039
+ ANL TGEL + F + APGT+ P ASSA+ FE A+TRLAGAA GTE LIYVRRADVA +VD LMD R+P GPTVTSPA ARL LVRRS R+D + GRRA SPV G+R AF R G P RG G GRR SASPS S+ APT SG
Sbjct: 1 MAANLLLTGELEA----------FFDKSSDGVRRQAPGTSTQESAPAAAT----PNNTASSAQGNPFEEALTRLAGAASTCGTEPLIYVRRADVAAIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKD--SRGGRRALSPVRRGERAALAFHR-GRPG----RGDGXXXXXXXXSGGRRAVSASPSLSRGAPTIAPSG 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-10_006080.1 |
Exons | 2 |
Model size | 1938 |
Cds size | 1389 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816588.0514693-UTR-L-elsbetiae_contig5567:6353..6531 | 1622816588.0514693-UTR-L-elsbetiae_contig5567:6353..6531 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5567 6354..6531 + |
1691683667.0601535-UTR-L-elsbetiae_contig5567:6353..6531 | 1691683667.0601535-UTR-L-elsbetiae_contig5567:6353..6531 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5567 6354..6531 + |
1622816588.0933576-UTR-L-elsbetiae_contig5567:9395..9766 | 1622816588.0933576-UTR-L-elsbetiae_contig5567:9395..9766 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5567 9396..9766 + |
1691683667.0899017-UTR-L-elsbetiae_contig5567:9395..9766 | 1691683667.0899017-UTR-L-elsbetiae_contig5567:9395..9766 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5567 9396..9766 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816588.067427-CDS-L-elsbetiae_contig5567:6531..6630 | 1622816588.067427-CDS-L-elsbetiae_contig5567:6531..6630 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5567 6532..6630 + |
1691683667.0700228-CDS-L-elsbetiae_contig5567:6531..6630 | 1691683667.0700228-CDS-L-elsbetiae_contig5567:6531..6630 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5567 6532..6630 + |
1622816588.0803692-CDS-L-elsbetiae_contig5567:8105..9395 | 1622816588.0803692-CDS-L-elsbetiae_contig5567:8105..9395 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5567 8106..9395 + |
1691683667.079291-CDS-L-elsbetiae_contig5567:8105..9395 | 1691683667.079291-CDS-L-elsbetiae_contig5567:8105..9395 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5567 8106..9395 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5567.13877.1 >prot_L-elsbetiae_contig5567.13877.1 ID=prot_L-elsbetiae_contig5567.13877.1|Name=mRNA_L-elsbetiae_contig5567.13877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=463bp
MVSSRARSSAALPAAPCLSAGQKTRAVQLLIVWVCWVFFQIEGGSPGTSA ILFSLAVYLAEGPRSKRRPGKSPRKCMRRDALSWAEDGSSAASLELTANL PHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAAAAAAAAAAATAKPP EPPASSAEQTSFEAAMTRLAGAAELGTEALIYVRRADVAEMVDVLMDHAR SPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRR LGSPAVDGPRGGGGRSGRRVASASPSSQVAPTPTVSGGRALFQDGMTPPL RDVTRTNSSSTRVTVRARSPAGSPSGENSRNGNGNAGARRVRGLQEGKQR RLRQRVRSPSPSSSAAVPACSPACVVGMTPIALTKNSGAPLAAAGGVPST EEKRKFTGPSVLETKVGENVAAAAAAAAATPREAKIKYTPVQRTAGKREG QDFDDFWSSGWG* back to topmRNA from alignment at L-elsbetiae_contig5567:6354..9766+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5567.13877.1 ID=mRNA_L-elsbetiae_contig5567.13877.1|Name=mRNA_L-elsbetiae_contig5567.13877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3413bp|location=Sequence derived from alignment at L-elsbetiae_contig5567:6354..9766+ (Laminarionema elsbetiae ELsaHSoW15) GTTGTGCCGTACCTCACAAACGCAACAGCAACGAGCACGCGAGCTCGTTC
AGACCTTTGGATTGGGTGGATGGACAGCTTGCTGTAGTCTCCTGTTCCTA
CCGTGCTTCTTGTGCGGCACGCAGAGGGGGGACGAGCCTCTGTAGACGCG
CGGTACTTGGCGCGCACACGCCGACGAGATGGTTTCTTCGAGGGCGAGGA
GTTCGGCCGCATTGCCCGCCGCACCTTGTTTGAGTGCTGGACAGAAGACC
AGGGCGGTTCAGCTGCTGATTGTGTGGGTGAGTAATGCCTAGTAGCTTTC
GGAAGAGGGCTTGTCTGTCAAAAAAGATATTTAATATTTTTGAAGAGAGA
TTTGCGGTGCGCACCCACAGCAATAGGTTCGTATCTAAAGCAGTAGTCTA
CATAGACTAGCTACAAGTGTCATTTTTTTGTACGTCACACGACTGAGGCG
GGGACAAAATATCCCGCTTCACCAGTAGGCATCCCCAGCTTCCCATGCTG
CTAGTTGTTTTCATTGGTGATGCTGTGGTGCTGCTGCTCTTCAACCCAAT
TACTGTCACTGCTGTTGGTGTAGATATACCACCAGCTTGAATGCTTGCAC
ACAGCAGCGTGCGGTTTATTTCGCGAGCAGTCGCACACGTGTGGAGATTG
ACGGGGCAGATAAGAATTCTCGCTCGCGTTCAATCTCGAATCACTCGACG
AAAGAGCCATCTTGGTGTGCGAAATACTCTGGGGCTTGTCCTCATGCCCC
CCTGCCTGGCCAAGAGATCCCTTCGGATGACGTGGCTCGACGTTCGTCGC
CACTTCTACGCAACCACTGCTGCTGTCACCCATCTACAGCGTTCACGCCC
ATGTGCTGGTGATCTTGCCATGACGGGGCGGTCGGACCCACTCCTACATA
GGAGTATGTGTGTGTGTGTGTATAGGAGTATGTAGATAGATAGATAGGTA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATACAT
ACATACATACATACATACATACATACATACATACATACATACATACATAC
ATACATACATATATAGTCTAGTGTTGGACTGATAGATAGATAGATATCTA
GATAGATGATAGACCGATGGATAGATAGATGGATAGATTTAGATTACAGG
AAAAAAGTGTCGGGTACATCTATATCTATGCTACATGCCGAGTCGGATGG
ATGACGATACGGCAGTTGTTACACCAAGAGGCATATGATGAACTGCTGTT
CGCATCAAGACGCTTGACCGGGGTAGAATGCATGGGGTGGTGCAAAAAAC
GCTTATTCGACATCCCGGCCACGACTGTTTGATATGTACGGCACGCTTGA
TACTGCATAATTTGTACAAGTTAGAATAAGAGCCGGAAATGCGCGACTTT
TCTTGGAGTTTCCAGGCGCCTCCAATTTCACGCATTCCCGCCGAGGTGGC
AACAGGTAGCAACGTCGGATTCCGGGCACCTTTTGTCCATACGAGTTTTG
CTCGTGGACGTATCGTAGCTGAGGAGGTCATATTTGAATCCCGCGAGATT
TGTTCGTCGCAGAGCTCCACACCGGAAGCACATGCTATGTGCTCTTGCGA
TCACTCGTTTTTTTCTCGTGTGAAGATAGCAGGTGGCCCAATTGGCATGG
ATGTTTGTCGCAGAATATTTTATGGCCACAACTGGCAACAAAAAAATCAG
ACACGCGCGAACAACCCTGCTCCATCTTCCGTGAACCATGCTGTCATAAC
AGGTGTGCTGGGTGTTCTTTCAGATTGAAGGAGGATCCCCAGGCACGAGC
GCCATCCTCTTTTCGCTCGCCGTGTATCTTGCTGAGGGTCCAAGAAGCAA
ACGCCGCCCCGGAAAGAGCCCCCGCAAGTGTATGCGGCGAGATGCGCTTT
CGTGGGCAGAGGATGGAAGCAGCGCTGCGTCACTGGAGCTCACGGCGAAC
CTACCGCACACGGGCGAGCTTTCGTCCAACTCCGGCACGCGCGCCCACAA
AGTTGAGTTTTTGACACCGTTGGCCGCAGCCCCGGGCAACGCAGCCCCCG
GTACCGCCGCCGCCGCTGCTGCCGCCGCCGCCGCTGCTACCGCCAAACCC
CCCGAACCGCCGGCGAGCAGCGCGGAGCAAACCTCGTTCGAGGCGGCGAT
GACGCGGTTGGCCGGCGCGGCAGAGCTTGGTACGGAGGCTCTGATCTACG
TACGGCGGGCGGACGTGGCAGAGATGGTAGACGTCCTCATGGACCACGCG
AGAAGCCCGGAAGGTCCTACCGTCACTTCGCCAGCCCTTGCCCGCCTCGC
CCTCGTGCGGCGGTCGAAGAGGAGAGACCTGCCCAACGGGAGTGGGAGGC
GGGCTCGCTCGCCCGTCCCCTGCGGGAAGCGGCCGCTGTCTGCGTTTCGT
CGGCTAGGATCCCCTGCGGTTGACGGCCCTCGCGGGGGTGGCGGACGCAG
CGGGCGCCGGGTAGCCTCCGCTAGTCCCTCTTCCCAGGTAGCACCGACGC
CGACGGTATCTGGTGGGCGAGCGCTCTTCCAAGACGGCATGACGCCGCCC
CTGCGTGACGTGACGCGGACGAACTCGTCATCTACTCGGGTAACCGTTCG
TGCCCGGTCTCCCGCGGGTAGCCCAAGTGGGGAGAACAGCAGGAATGGGA
ATGGGAACGCGGGTGCCAGGCGGGTGAGAGGTTTGCAGGAAGGGAAGCAA
CGCCGCCTGCGGCAGCGCGTGCGGTCTCCATCGCCTTCGTCTTCCGCGGC
TGTCCCGGCTTGTTCCCCGGCGTGTGTTGTTGGCATGACGCCTATCGCCT
TGACCAAGAACAGCGGGGCGCCGCTGGCCGCCGCGGGTGGTGTGCCCTCG
ACAGAAGAGAAGAGGAAGTTTACGGGCCCTTCTGTGCTCGAAACGAAAGT
GGGCGAAAACGTCGCTGCTGCTGCCGCTGCTGCTGCTGCGACGCCGAGGG
AAGCGAAGATCAAATACACCCCTGTCCAGCGCACGGCGGGGAAGAGGGAG
GGACAGGACTTTGACGACTTTTGGAGCTCTGGTTGGGGATGACCGTGCTT
GGCCTCGGCAGGCCCGCTGCGTCTCTAGAGAGACCCCGCAGTCGGCTCGA
TGGGTGACGCGTCGGCCGCGAATTTTGTTTAACGGAAGCTATGGAGCGCG
CTCTAGTGTGGGGGGCGTTGAAGGGGGTGCAAGCGCGTTCCTGTCGACGG
GATGTTGACCTTTCTGTCGCCGCTGGTGCCAAAAGTGGGTCTGGACAGCT
GCACAGATGAAATTTGAAGCCAGGGTGCTACCGGAGGTATGTTTCAAGAG
GGCTGCTCTGGCGAGAGGAAAAAGACTGGATCAAGTCCTTCCTACGCCAT
ACAACTGTAGCTTGCGATTGAGGTCGGGCGATGGCAAGGAAAGCCAAGAA
GCTGGGAGGTGGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5567:6354..9766+ >mRNA_L-elsbetiae_contig5567.13877.1 ID=mRNA_L-elsbetiae_contig5567.13877.1|Name=mRNA_L-elsbetiae_contig5567.13877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2778bp|location=Sequence derived from alignment at L-elsbetiae_contig5567:6354..9766+ (Laminarionema elsbetiae ELsaHSoW15) ATGGTTTCTTCGAGGGCGAGGAGTTCGGCCGCATTGCCCGCCGCACCTTG TTTGAGTGCTGGACAGAAGACCAGGGCGGTTCAGCTGCTGATTGTGTGGA TGGTTTCTTCGAGGGCGAGGAGTTCGGCCGCATTGCCCGCCGCACCTTGT TTGAGTGCTGGACAGAAGACCAGGGCGGTTCAGCTGCTGATTGTGTGGGT GTGCTGGGTGTTCTTTCAGATTGAAGGAGGATCCCCAGGCACGAGCGCCA TCCTCTTTTCGCTCGCCGTGTATCTTGCTGAGGGTCCAAGAAGCAAACGC CGCCCCGGAAAGAGCCCCCGCAAGTGTATGCGGCGAGATGCGCTTTCGTG GGCAGAGGATGGAAGCAGCGCTGCGTCACTGGAGCTCACGGCGAACCTAC CGCACACGGGCGAGCTTTCGTCCAACTCCGGCACGCGCGCCCACAAAGTT GAGTTTTTGACACCGTTGGCCGCAGCCCCGGGCAACGCAGCCCCCGGTAC CGCCGCCGCCGCTGCTGCCGCCGCCGCCGCTGCTACCGCCAAACCCCCCG AACCGCCGGCGAGCAGCGCGGAGCAAACCTCGTTCGAGGCGGCGATGACG CGGTTGGCCGGCGCGGCAGAGCTTGGTACGGAGGCTCTGATCTACGTACG GCGGGCGGACGTGGCAGAGATGGTAGACGTCCTCATGGACCACGCGAGAA GCCCGGAAGGTCCTACCGTCACTTCGCCAGCCCTTGCCCGCCTCGCCCTC GTGCGGCGGTCGAAGAGGAGAGACCTGCCCAACGGGAGTGGGAGGCGGGC TCGCTCGCCCGTCCCCTGCGGGAAGCGGCCGCTGTCTGCGTTTCGTCGGC TAGGATCCCCTGCGGTTGACGGCCCTCGCGGGGGTGGCGGACGCAGCGGG CGCCGGGTAGCCTCCGCTAGTCCCTCTTCCCAGGTAGCACCGACGCCGAC GGTATCTGGTGGGCGAGCGCTCTTCCAAGACGGCATGACGCCGCCCCTGC GTGACGTGACGCGGACGAACTCGTCATCTACTCGGGTAACCGTTCGTGCC CGGTCTCCCGCGGGTAGCCCAAGTGGGGAGAACAGCAGGAATGGGAATGG GAACGCGGGTGCCAGGCGGGTGAGAGGTTTGCAGGAAGGGAAGCAACGCC GCCTGCGGCAGCGCGTGCGGTCTCCATCGCCTTCGTCTTCCGCGGCTGTC CCGGCTTGTTCCCCGGCGTGTGTTGTTGGCATGACGCCTATCGCCTTGAC CAAGAACAGCGGGGCGCCGCTGGCCGCCGCGGGTGGTGTGCCCTCGACAG AAGAGAAGAGGAAGTTTACGGGCCCTTCTGTGCTCGAAACGAAAGTGGGC GAAAACGTCGCTGCTGCTGCCGCTGCTGCTGCTGCGACGCCGAGGGAAGC GAAGATCAAATACACCCCTGTCCAGCGCACGGCGGGGAAGAGGGAGGGAC AGGACTTTGACGACTTTTGGAGCTCTGGTTGGGGATGAGTGTGCTGGGTG TTCTTTCAGATTGAAGGAGGATCCCCAGGCACGAGCGCCATCCTCTTTTC GCTCGCCGTGTATCTTGCTGAGGGTCCAAGAAGCAAACGCCGCCCCGGAA AGAGCCCCCGCAAGTGTATGCGGCGAGATGCGCTTTCGTGGGCAGAGGAT GGAAGCAGCGCTGCGTCACTGGAGCTCACGGCGAACCTACCGCACACGGG CGAGCTTTCGTCCAACTCCGGCACGCGCGCCCACAAAGTTGAGTTTTTGA CACCGTTGGCCGCAGCCCCGGGCAACGCAGCCCCCGGTACCGCCGCCGCC GCTGCTGCCGCCGCCGCCGCTGCTACCGCCAAACCCCCCGAACCGCCGGC GAGCAGCGCGGAGCAAACCTCGTTCGAGGCGGCGATGACGCGGTTGGCCG GCGCGGCAGAGCTTGGTACGGAGGCTCTGATCTACGTACGGCGGGCGGAC GTGGCAGAGATGGTAGACGTCCTCATGGACCACGCGAGAAGCCCGGAAGG TCCTACCGTCACTTCGCCAGCCCTTGCCCGCCTCGCCCTCGTGCGGCGGT CGAAGAGGAGAGACCTGCCCAACGGGAGTGGGAGGCGGGCTCGCTCGCCC GTCCCCTGCGGGAAGCGGCCGCTGTCTGCGTTTCGTCGGCTAGGATCCCC TGCGGTTGACGGCCCTCGCGGGGGTGGCGGACGCAGCGGGCGCCGGGTAG CCTCCGCTAGTCCCTCTTCCCAGGTAGCACCGACGCCGACGGTATCTGGT GGGCGAGCGCTCTTCCAAGACGGCATGACGCCGCCCCTGCGTGACGTGAC GCGGACGAACTCGTCATCTACTCGGGTAACCGTTCGTGCCCGGTCTCCCG CGGGTAGCCCAAGTGGGGAGAACAGCAGGAATGGGAATGGGAACGCGGGT GCCAGGCGGGTGAGAGGTTTGCAGGAAGGGAAGCAACGCCGCCTGCGGCA GCGCGTGCGGTCTCCATCGCCTTCGTCTTCCGCGGCTGTCCCGGCTTGTT CCCCGGCGTGTGTTGTTGGCATGACGCCTATCGCCTTGACCAAGAACAGC GGGGCGCCGCTGGCCGCCGCGGGTGGTGTGCCCTCGACAGAAGAGAAGAG GAAGTTTACGGGCCCTTCTGTGCTCGAAACGAAAGTGGGCGAAAACGTCG CTGCTGCTGCCGCTGCTGCTGCTGCGACGCCGAGGGAAGCGAAGATCAAA TACACCCCTGTCCAGCGCACGGCGGGGAAGAGGGAGGGACAGGACTTTGA CGACTTTTGGAGCTCTGGTTGGGGATGA back to top
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