mRNA_L-elsbetiae_contig5563.13872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5563.13872.1
Unique NamemRNA_L-elsbetiae_contig5563.13872.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.830e-64
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 1 
Query:    7 RNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQNPFRQSLQDIPVAPADGAGAGAGESGDISEDMSWGFDQTFFGEEGDGDGDDEPDDYDDI 435
            R+ RTRLFESIR NREKIGRAM+ LRDAMR+GD+ELAERLKAFIMHLR +DPQFATQDAMD ALEQGLFSTAAKLKLKL +INQNPFR SL D+             + GD SEDMSWGFDQTFFGEEGD   DD+PDDYDDI
Sbjct:   33 RDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDVSAEDGXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNI-DDDPDDYDDI 174
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BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.150e-59
Identity = 109/148 (73.65%), Postives = 117/148 (79.05%), Query Frame = 1 
Query:    7 RNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQNPFRQSLQDIPVAPADGAGAGAG-----ESGDISEDMSWGFDQTFFGEEGDGDGDDEPDDYDDI 435
            R+ RTRLFESIR NREKIGRAM+ LRDAMRSGD+EL ERLKAFIMHLR +DPQFATQDAMD ALEQGLFSTAAKLKLKL DI QNPFR SL D+     DG           + GD SEDMSWGFDQTFFGEEGD   DD+PDDYD+I
Sbjct:   78 RDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVSE---DGXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNI-DDDPDDYDNI 221
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BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: A0A836CMC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.080e-10
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:   25 LFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQ-NPFRQSLQDIPVAPADGAGAGAGESGDISEDMSWGFDQTF 378
            + ES+RS  +K+ +   +LR A   GD     +L+  +  LR +DP F+ +D   AA+ +G F+ AAKLKL +  + Q NP R   +D                 D  EDMSWGFD +F
Sbjct:    1 MSESVRSRIDKVKK---KLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQYKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAED---------------DHDPGEDMSWGFDPSF 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDR1_ECTSI5.830e-6475.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L051_9PHAE1.150e-5973.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMC9_9STRA1.080e-1035.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5563contigL-elsbetiae_contig5563:8679..10177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
Exons3
Model size438
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5563.13872.1prot_L-elsbetiae_contig5563.13872.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5563 8679..10177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.4664721-CDS-L-elsbetiae_contig5563:8678..88881622816587.4664721-CDS-L-elsbetiae_contig5563:8678..8888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 8679..8888 -
1691683666.6674638-CDS-L-elsbetiae_contig5563:8678..88881691683666.6674638-CDS-L-elsbetiae_contig5563:8678..8888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 8679..8888 -
1622816587.4794583-CDS-L-elsbetiae_contig5563:9708..98431622816587.4794583-CDS-L-elsbetiae_contig5563:9708..9843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 9709..9843 -
1691683666.685973-CDS-L-elsbetiae_contig5563:9708..98431691683666.685973-CDS-L-elsbetiae_contig5563:9708..9843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 9709..9843 -
1622816587.4911578-CDS-L-elsbetiae_contig5563:10084..101771622816587.4911578-CDS-L-elsbetiae_contig5563:10084..10177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 10085..10177 -
1691683666.702685-CDS-L-elsbetiae_contig5563:10084..101771691683666.702685-CDS-L-elsbetiae_contig5563:10084..10177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5563 10085..10177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5563.13872.1

>prot_L-elsbetiae_contig5563.13872.1 ID=prot_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MARNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLR
GKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQNPFRQSLQDIPVAP
ADGAGAGAGESGDISEDMSWGFDQTFFGEEGDGDGDDEPDDYDDI*
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mRNA from alignment at L-elsbetiae_contig5563:8679..10177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5563.13872.1 ID=mRNA_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1499bp|location=Sequence derived from alignment at L-elsbetiae_contig5563:8679..10177- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGAATCACAGAACCCGGCTGTTCGAGAGCATCCGCAGCAACCG
CGAAAAGATCGGGCGGGCGATGGACAGGCTCCGGGATGCGATGGTGAGAA
CATAACGCATTCAACAACATTCAACCCCCTGCTGTGCCACCGCCCACGCC
CCTCAAGACTATGCCACGGGCATTGCGGCGTATTTTCCCCTGAAATGGCC
ACCACCGACTCGCACTCTCGCACTGAAATATTTCTACTACAAACGAGTAC
ATGCCAAGCCGAACACCGACGATTTTTTTCCTGCCCTCAATATTTGGCAT
CGGTCGGCGGCGGGCGGCGGGTGTATCTACGCAGAGATCTGGCGACGACG
AGCTGGCAGAAAGACTGAAAGCCTTCATCATGCACCTCCGTGGAAAAGAC
CCCCAGTTTGCGACCCAGGACGCGATGGATGCGGCCCTCGAGCAGGGATT
GTTTTCCACTGCCGCCAAGGTGCCAATCGTACTCGTGTGCCGTTTCGCGG
CATTGAAAGTTTCATCGAAGATTACATAAAAGTATGTGCGACGAGTATAT
CTGGGAAAAAATGGGGTTAGCATGCCTACAACAGTCCCTCTTGGACGACT
TTTTCGTAGACTATGTATCTAGACGTAGACTGCTTACATTTGTATACATC
AATTAAAAGTAAGACACAAACTGCCAATTGCAAACTCCTACCTCGCTAGA
TTACGCTAGGCCACTTGTACCGTGTTTCATGCTTTAGACTAAATGGAATT
TGGTCACTCTTGTTGCGGTACCGTGCGTGCTGTCTCTCACTCGAAGGGGC
CACGTTCGTGAGCGTTGGTTCTTTATCAGGTGCCCCGCCTATATTTACCT
CTACTCTTTGCCGGCTACTCCATGCCGGTAGCCGCCAACACCTCCAGCCC
CGCAGTGCAGTAGTCGGGTTGGACCCACGTTTGATTATTCGTGACCGCTC
GTCACTCCACCTCGCGCCGCCCCTGCAGGCATGGACACGCTATCCCAGTC
TTCGTTATCTGCTGTTCGTGCACTACACTTCTTATATGATACGACTCACC
TACTTTGTCAAATAGACTCTCGAGTGCTAAGCTGTGCTGGTGGTGCATAC
GTATGTATGTATGTAGACTGCGCCAACGCTGTGCCGATAATGACTATAAT
AGCTAATTACACCCTTTTCGACAGCCTCGTTTAATTTCCCATTGTTTTTT
TCTCGTGAAACGTCCTATCGGGAACGTGTGCATATACCACGATGACGTCA
CGCGCCCGAACGAAAAACGGACACGGGGGACACGGACAGCTAAAGCTCAA
GCTGGCGGACATAAACCAGAACCCGTTTCGACAAAGCCTCCAGGATATCC
CCGTGGCGCCGGCAGACGGCGCCGGCGCCGGCGCCGGCGAAAGCGGCGAC
ATTTCCGAGGACATGAGCTGGGGCTTCGACCAGACGTTCTTCGGGGAGGA
AGGGGACGGAGACGGGGATGACGAGCCCGACGATTACGACGATATCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5563:8679..10177-

>mRNA_L-elsbetiae_contig5563.13872.1 ID=mRNA_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig5563:8679..10177- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGAATCACAGAACCCGGCTGTTCGAGAGCATCCGCAGCAACCG
CGAAAAGATCGGGCGGGCGATGGACAGGCTCCGGGATGCGATGATGGCGC
GGAATCACAGAACCCGGCTGTTCGAGAGCATCCGCAGCAACCGCGAAAAG
ATCGGGCGGGCGATGGACAGGCTCCGGGATGCGATGAGATCTGGCGACGA
CGAGCTGGCAGAAAGACTGAAAGCCTTCATCATGCACCTCCGTGGAAAAG
ACCCCCAGTTTGCGACCCAGGACGCGATGGATGCGGCCCTCGAGCAGGGA
TTGTTTTCCACTGCCGCCAAGAGATCTGGCGACGACGAGCTGGCAGAAAG
ACTGAAAGCCTTCATCATGCACCTCCGTGGAAAAGACCCCCAGTTTGCGA
CCCAGGACGCGATGGATGCGGCCCTCGAGCAGGGATTGTTTTCCACTGCC
GCCAAGCTAAAGCTCAAGCTGGCGGACATAAACCAGAACCCGTTTCGACA
AAGCCTCCAGGATATCCCCGTGGCGCCGGCAGACGGCGCCGGCGCCGGCG
CCGGCGAAAGCGGCGACATTTCCGAGGACATGAGCTGGGGCTTCGACCAG
ACGTTCTTCGGGGAGGAAGGGGACGGAGACGGGGATGACGAGCCCGACGA
TTACGACGATATCTGACTAAAGCTCAAGCTGGCGGACATAAACCAGAACC
CGTTTCGACAAAGCCTCCAGGATATCCCCGTGGCGCCGGCAGACGGCGCC
GGCGCCGGCGCCGGCGAAAGCGGCGACATTTCCGAGGACATGAGCTGGGG
CTTCGACCAGACGTTCTTCGGGGAGGAAGGGGACGGAGACGGGGATGACG
AGCCCGACGATTACGACGATATCTGA
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