mRNA_L-elsbetiae_contig5561.13871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5561.13871.1
Unique NamemRNA_L-elsbetiae_contig5561.13871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5561.13871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5561contigL-elsbetiae_contig5561:5929..7357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5561.13871.1prot_L-elsbetiae_contig5561.13871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5561 5941..7357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.410959-UTR-L-elsbetiae_contig5561:5928..59401622816587.410959-UTR-L-elsbetiae_contig5561:5928..5940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5561 5929..5940 +
1691683666.634332-UTR-L-elsbetiae_contig5561:5928..59401691683666.634332-UTR-L-elsbetiae_contig5561:5928..5940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5561 5929..5940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.421699-CDS-L-elsbetiae_contig5561:5940..60121622816587.421699-CDS-L-elsbetiae_contig5561:5940..6012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5561 5941..6012 +
1691683666.6457198-CDS-L-elsbetiae_contig5561:5940..60121691683666.6457198-CDS-L-elsbetiae_contig5561:5940..6012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5561 5941..6012 +
1622816587.4326885-CDS-L-elsbetiae_contig5561:7024..73571622816587.4326885-CDS-L-elsbetiae_contig5561:7024..7357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5561 7025..7357 +
1691683666.6566005-CDS-L-elsbetiae_contig5561:7024..73571691683666.6566005-CDS-L-elsbetiae_contig5561:7024..7357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5561 7025..7357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5561.13871.1

>prot_L-elsbetiae_contig5561.13871.1 ID=prot_L-elsbetiae_contig5561.13871.1|Name=mRNA_L-elsbetiae_contig5561.13871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MVERLANLERENAQLKKENNRLRKREKPLGRRGTRPVPSPTDAPPSPPPS
RPPTAQSAGTPTCDPTAALAGSPPLVPAPPTEWPGLTLSPASPVSKAITS
PRSSRSSSSQSPSPPTSPLLTPFSYSHLPMSFHPR
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mRNA from alignment at L-elsbetiae_contig5561:5929..7357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5561.13871.1 ID=mRNA_L-elsbetiae_contig5561.13871.1|Name=mRNA_L-elsbetiae_contig5561.13871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1429bp|location=Sequence derived from alignment at L-elsbetiae_contig5561:5929..7357+ (Laminarionema elsbetiae ELsaHSoW15)
AACCGCTGGAGCATGGTCGAACGCCTGGCAAACCTCGAGAGGGAGAACGC
GCAGCTCAAGAAGGAAAACAACCGTCTGAGAAAGGTGGATGTCACTGGTT
TGTAACCATCGTGGGTCTCGGAGTTCGATCGTGGGTCTCGGAGTTCGAGA
CGGCATTTATGTGGGCCCTGGCCATTTACATAGGAGCATGTGTGTAGCAT
GGGAATAATACTTGGATGAGAGTTGAACAGCAACCGCTGTCGCGTTCGCG
TTATTTGGCAGTGAGTTTCTTCCCAAACCTCGCAATAAAAAACTTAATAC
TTGGATACTGGATGAGAGTTGAACAGCAACCGCTGTCGCGTTCGCGTTAT
TTGGCAGTGAGTTTCTTCCCAAACCTCGCAATAAAAAACTATCACGATGC
CAATTCGAATCTTAAATGCGGGAAAACAAGACTCTACGGGGCACGAAGAT
GTAATTGTAACTCGAGTACCTCGAGTGCCACGAGAACAACGGGGCCCCCG
TAGGTCGGGGCCTCGTCTTCTTCATGCCTTTGCCAGTTTCCACCGCGCTT
TGTGTCACGAGTGTGCACTAATTAACGAGAGAGGTAGTATCACGGCACGC
AATAACGGCACGAGAGACGATTTCGGCTGTTCCTGTTCTCGCCCATCCAC
GCGTGTGGGCAGCAATGTTTGTTTTCCGTCTGTCTTGTTCTGTCTCTTGT
CTCTCCCGGTTTTTGGCCCTGTTTTAACATTAGAGTAGACGTCGGCTGGT
GCCGCGTTTTGGGTAAAGCTCAAGCGTGCTTTATCCCACCGACAACGACT
CCTTTCCTCTCCGGCCTTGCGAACGTATCGATAGTTTTAGTTTTTTTTGT
TTGTTAAGTTCGTTCCATGGTGTTGCCCCTCCACCCGCCCGACCCCACCC
CACCTCACGCACCTCATCCCCCGCCCCGCCCCGCCCCGGGGGCACGCTAC
TCGTCTCCAGCGCGCACCAACCTACCCACCCACCCAACCACCCTGCAACT
GAACCATATACCCTGGATGCCTGTCTTTGACCCTTTCGATCGGCCCCCTC
GACGACGCCCATCACGTTTTCACCACACGGAACACGACAAAAAAAGCGAG
AAAAACCGCTGGGCCGCCGAGGAACACGCCCCGTGCCCAGCCCTACCGAC
GCTCCGCCGTCTCCCCCACCGTCCCGTCCGCCGACAGCCCAAAGCGCCGG
GACCCCGACTTGCGACCCCACCGCCGCCCTGGCCGGCTCCCCGCCGCTGG
TACCCGCACCACCGACCGAATGGCCCGGTTTGACTTTGAGCCCGGCAAGC
CCTGTCTCCAAAGCAATAACCAGCCCCCGAAGCAGCCGCTCCTCTTCCTC
ACAATCCCCAAGCCCTCCTACCTCCCCCCTCCTCACTCCGTTTTCGTACA
GCCACCTACCCATGTCATTCCATCCGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5561:5929..7357+

>mRNA_L-elsbetiae_contig5561.13871.1 ID=mRNA_L-elsbetiae_contig5561.13871.1|Name=mRNA_L-elsbetiae_contig5561.13871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig5561:5929..7357+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGAACGCCTGGCAAACCTCGAGAGGGAGAACGCGCAGCTCAAGAA
GGAAAACAACCGTCTGAGAAAGATGGTCGAACGCCTGGCAAACCTCGAGA
GGGAGAACGCGCAGCTCAAGAAGGAAAACAACCGTCTGAGAAAGCGAGAA
AAACCGCTGGGCCGCCGAGGAACACGCCCCGTGCCCAGCCCTACCGACGC
TCCGCCGTCTCCCCCACCGTCCCGTCCGCCGACAGCCCAAAGCGCCGGGA
CCCCGACTTGCGACCCCACCGCCGCCCTGGCCGGCTCCCCGCCGCTGGTA
CCCGCACCACCGACCGAATGGCCCGGTTTGACTTTGAGCCCGGCAAGCCC
TGTCTCCAAAGCAATAACCAGCCCCCGAAGCAGCCGCTCCTCTTCCTCAC
AATCCCCAAGCCCTCCTACCTCCCCCCTCCTCACTCCGTTTTCGTACAGC
CACCTACCCATGTCATTCCATCCGCGTCGAGAAAAACCGCTGGGCCGCCG
AGGAACACGCCCCGTGCCCAGCCCTACCGACGCTCCGCCGTCTCCCCCAC
CGTCCCGTCCGCCGACAGCCCAAAGCGCCGGGACCCCGACTTGCGACCCC
ACCGCCGCCCTGGCCGGCTCCCCGCCGCTGGTACCCGCACCACCGACCGA
ATGGCCCGGTTTGACTTTGAGCCCGGCAAGCCCTGTCTCCAAAGCAATAA
CCAGCCCCCGAAGCAGCCGCTCCTCTTCCTCACAATCCCCAAGCCCTCCT
ACCTCCCCCCTCCTCACTCCGTTTTCGTACAGCCACCTACCCATGTCATT
CCATCCGCGT
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