mRNA_L-elsbetiae_contig5554.13864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5554.13864.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE) HSP 1 Score: 436 bits (1122), Expect = 3.460e-133 Identity = 343/674 (50.89%), Postives = 379/674 (56.23%), Query Frame = 1 Query: 1 QDAGFAPAVAFQTVAAEGISGLLCAQLQALVETALLPLARFTAELSEMDALAKSCKRKGESEHHYARKVNELNSKLETERREDKRAVLQEKVARNINKLTAARRGREEASEELHRLVDSSQQSSHDCFNPVFASICQFQEASY---SHGHLLSSMLLRVVQSSLGTTALPFATAAADAAMLPMPTTAVPSSSSP-----VPEGEREGVLRWRDDEDDG---AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGVDCGVERYASDGSTXXXXXXXXXXXGDGKHGIAAETDXXXXXCGGSAQPDEAQPPRTKDEREHASLRGVPRAPQARDERGHENDGDTGPVPGEERLDAAAEMKMKKGRGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGWGVQISCRPPPGTFFEAHLPWGKRRRVSGNLRWKMGQRARQHRQV--------------FCAAEGRELVMYDSESDSNAGLPPRARYLVMDVRSEKTGPGSLELDVTVADDSELTTLGWSGNANAAAAPGLAFVETRSVTLTAPGRHEHARWHLALEEAHSWTEQKERDALMEELELSLPFRESAIEHVQHCLPDATINDILGVSAARDNPECVLKSMVFDAVEAAEVAAAAASTGPLSSP 1947 QDAGFAPAVAFQTVAAEG+SGLLCAQLQALV+TAL PLARFTAEL EMD L K+C+RK ESEHHYA+KVNELNSKLE ERREDKRAVLQEK ARNI KL A +ASEEL RLV SS QSSHDCF+PVFASICQFQEASY S G +M Q+S P A ++P+ TAV + + E GVL R+ + G A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D T K G A GGS GV PQAR PP G F EAHLPWGKRRR+SGNLR K+ R R+V FCAAEGRELV+YD+ESDSNAGLPPRARYLVM VR+ KTGP + EL+VTVAD+SE+++LGW A+ PG+AFVETRSVTLTA GRHEHARW LALEEA SWTE+KER+AL+EELELSLPFRE AIEHV H LPD+TI DILGVS A NP CVLKS+VFDA EAA AA AA+ GPLSSP Sbjct: 31 QDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTALRPLARFTAELGEMDTLFKACQRKRESEHHYAKKVNELNSKLEAERREDKRAVLQEKAARNIRKLAAXXXXXXQASEELSRLVVSSHQSSHDCFDPVFASICQFQEASYRASSSGETTGAMPATPAQTS------PLAPPRL-LRLVPLGATAVVTEKTGSRTLGTVEAVVPGVLGRRNRDGSGGVLALHEGERLVRQKKVVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDDETPERGEDRPVVPAGAKTGADAAPPGAGVDWGGSG--------------------GVTTVPQARP-------------------------------------------------------------------------------------------TPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRVATSGGREWGVWGGVFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRALKTGPNAAELEVTVADESEVSSLGWRERASTG--PGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSTIEDILGVSTAMTNPGCVLKSVVFDAAEAAASAAEAAAPGPLSSP 584
BLAST of mRNA_L-elsbetiae_contig5554.13864.1 vs. uniprot
Match: D8LRB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB3_ECTSI) HSP 1 Score: 215 bits (547), Expect = 8.890e-62 Identity = 116/145 (80.00%), Postives = 127/145 (87.59%), Query Frame = 1 Query: 1 QDAGFAPAVAFQTVAAEGISGLLCAQLQALVETALLPLARFTAELSEMDALAKSCKRKGESEHHYARKVNELNSKLETERREDKRAVLQEKVARNINKLTAARRGREEASEELHRLVDSSQQSSHDCFNPVFASICQFQEASYSH 435 +DAGFAPAVAFQTVAAEG+SGLLCAQLQALV+T L PLARFTAEL EMD L+K+C+RK ESEHHYA+KVNELN KLE ERREDKRAVLQEK ARNI KL AAR R++ASEEL RLV S QSSHDC +PVFASICQFQEASY + Sbjct: 48 EDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTTLRPLARFTAELGEMDTLSKACQRKRESEHHYAKKVNELNGKLEAERREDKRAVLQEKAARNIRKLAAARTVRKQASEELSRLVVISHQSSHDCLDPVFASICQFQEASYRY 192
BLAST of mRNA_L-elsbetiae_contig5554.13864.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI) HSP 1 Score: 175 bits (443), Expect = 4.220e-42 Identity = 92/128 (71.88%), Postives = 105/128 (82.03%), Query Frame = 1 Query: 1492 MDVRSEKTGPGSLELDVTVADDSELTTLGWSGNANAAAAPGLAFVETRSVTLTAPGRHEHARWHLALEEAHSWTEQKERDALMEELELSLPFRESAIEHVQHCLPDATINDILGVSAARDNPECVLKS 1875 M VR+ KTGP + EL+VTVAD+SE+++LGW A+ PG+AFVETRSVTLTA GRHEHARW LALEEA SWTE+KER+AL+EELELSLPFRE AIEHV H LPD+ I DILGVS A NP CVLKS Sbjct: 1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTG--PGVAFVETRSVTLTAYGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKS 126 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5554.13864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5554.13864.1 >prot_L-elsbetiae_contig5554.13864.1 ID=prot_L-elsbetiae_contig5554.13864.1|Name=mRNA_L-elsbetiae_contig5554.13864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=733bp QDAGFAPAVAFQTVAAEGISGLLCAQLQALVETALLPLARFTAELSEMDAback to top mRNA from alignment at L-elsbetiae_contig5554:2536..12366+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5554.13864.1 ID=mRNA_L-elsbetiae_contig5554.13864.1|Name=mRNA_L-elsbetiae_contig5554.13864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9831bp|location=Sequence derived from alignment at L-elsbetiae_contig5554:2536..12366+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5554:2536..12366+ >mRNA_L-elsbetiae_contig5554.13864.1 ID=mRNA_L-elsbetiae_contig5554.13864.1|Name=mRNA_L-elsbetiae_contig5554.13864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4398bp|location=Sequence derived from alignment at L-elsbetiae_contig5554:2536..12366+ (Laminarionema elsbetiae ELsaHSoW15)back to top |