mRNA_L-elsbetiae_contig5553.13862.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5553.13862.1
Unique NamemRNA_L-elsbetiae_contig5553.13862.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5553.13862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5553contigL-elsbetiae_contig5553:3546..3997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size452
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5553.13862.1prot_L-elsbetiae_contig5553.13862.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5553 3639..3962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.546425-UTR-L-elsbetiae_contig5553:3545..36381622816586.546425-UTR-L-elsbetiae_contig5553:3545..3638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5553 3546..3638 +
1691683666.0840576-UTR-L-elsbetiae_contig5553:3545..36381691683666.0840576-UTR-L-elsbetiae_contig5553:3545..3638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5553 3546..3638 +
1622816586.5721717-UTR-L-elsbetiae_contig5553:3962..39971622816586.5721717-UTR-L-elsbetiae_contig5553:3962..3997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5553 3963..3997 +
1691683666.11727-UTR-L-elsbetiae_contig5553:3962..39971691683666.11727-UTR-L-elsbetiae_contig5553:3962..3997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5553 3963..3997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.5571582-CDS-L-elsbetiae_contig5553:3638..39621622816586.5571582-CDS-L-elsbetiae_contig5553:3638..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5553 3639..3962 +
1691683666.1045406-CDS-L-elsbetiae_contig5553:3638..39621691683666.1045406-CDS-L-elsbetiae_contig5553:3638..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5553 3639..3962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5553.13862.1

>prot_L-elsbetiae_contig5553.13862.1 ID=prot_L-elsbetiae_contig5553.13862.1|Name=mRNA_L-elsbetiae_contig5553.13862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MNITVRVLRTPVVCALLCLPFGLSLPSSCSRCARARGLVSRDRPSVHRHH
HHHHHHHQRPADTEARARSSTGKKTSGGGGGDVVFCLRHARSSSVLWVGT
IGTVGDH*
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mRNA from alignment at L-elsbetiae_contig5553:3546..3997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5553.13862.1 ID=mRNA_L-elsbetiae_contig5553.13862.1|Name=mRNA_L-elsbetiae_contig5553.13862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig5553:3546..3997+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCCGGCTGCCGCGCTTCCAGCCTCGACCGGGATGAACAATGGCG
GCGGTAGCGGCGGCCGGCTGCCGCGCAGCCAGCCTCGACCGAGATGAACA
TCACCGTCCGCGTGTTGAGGACGCCGGTGGTTTGTGCTCTTCTTTGTTTG
CCTTTTGGGCTCTCACTGCCTTCGTCGTGTTCCCGCTGCGCGCGCGCGCG
CGGCCTGGTGAGCCGTGACCGACCATCAGTACACCGGCACCACCACCACC
ACCACCACCACCATCAGCGCCCAGCAGACACAGAGGCGAGAGCTCGAAGC
AGCACGGGAAAAAAAACAAGCGGCGGCGGCGGCGGGGACGTCGTGTTTTG
CTTGCGGCACGCACGGTCCTCGTCCGTTCTTTGGGTGGGTACAATAGGTA
CGGTCGGTGACCACTGACCCCCCCCCCCCCCTGTGAAGTGACGATGATGG
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5553:3546..3997+

>mRNA_L-elsbetiae_contig5553.13862.1 ID=mRNA_L-elsbetiae_contig5553.13862.1|Name=mRNA_L-elsbetiae_contig5553.13862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5553:3546..3997+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACATCACCGTCCGCGTGTTGAGGACGCCGGTGGTTTGTGCTCTTCT
TTGTTTGCCTTTTGGGCTCTCACTGCCTTCGTCGTGTTCCCGCTGCGCGC
GCGCGCGCGGCCTGGTGAGCCGTGACCGACCATCAGTACACCGGCACCAC
CACCACCACCACCACCACCATCAGCGCCCAGCAGACACAGAGGCGAGAGC
TCGAAGCAGCACGGGAAAAAAAACAAGCGGCGGCGGCGGCGGGGACGTCG
TGTTTTGCTTGCGGCACGCACGGTCCTCGTCCGTTCTTTGGGTGGGTACA
ATAGGTACGGTCGGTGACCACTGAATGAACATCACCGTCCGCGTGTTGAG
GACGCCGGTGGTTTGTGCTCTTCTTTGTTTGCCTTTTGGGCTCTCACTGC
CTTCGTCGTGTTCCCGCTGCGCGCGCGCGCGCGGCCTGGTGAGCCGTGAC
CGACCATCAGTACACCGGCACCACCACCACCACCACCACCACCATCAGCG
CCCAGCAGACACAGAGGCGAGAGCTCGAAGCAGCACGGGAAAAAAAACAA
GCGGCGGCGGCGGCGGGGACGTCGTGTTTTGCTTGCGGCACGCACGGTCC
TCGTCCGTTCTTTGGGTGGGTACAATAGGTACGGTCGGTGACCACTGA
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