mRNA_L-elsbetiae_contig5553.13861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 158 bits (399), Expect = 6.160e-46 Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 Query: 1 LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKV 411 L+ +ECD EGRP P GG SG P + ++ R ++VFTGL +TGHD L VT +FGVDAVHQ A VTSP+QV ADGR YS VFYPSL+E+WPELY DV++VEVD+ VE+L D G E RY GP LKV Sbjct: 51 LARKECDFEGRPLPGGG--------SGMTPSSTVSSNGRDTHVVFTGLNDTGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.170e-44 Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1 Query: 1 LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRAGP 432 +S +ECDLEGRP R+G + PI R+ ++ FTGLE+TGHDL L VTA+FGVDAVHQ A VTSP++VG DGR YS VFYP +QEIWPELY +++ VEVD+ +EIL D+ GE R+ GP LKVAY RA P Sbjct: 111 VSRKECDLEGRPIT-----RIGNSLT---PITASSPDVRESHIEFTGLEKTGHDLRGLRVTAIFGVDAVHQIACVTSPIEVGPDGRAYSRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIP 246
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.390e-44 Identity = 83/148 (56.08%), Postives = 98/148 (66.22%), Query Frame = 1 Query: 1 LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRAGPGASV 444 L+ +ECD EGRP P GG SG P + ++ R ++VFTGL TGHD L VT +FGVDAVHQ A VTSP+QV ADGR YS VFYPSL+++WPELY DV++VEVD+ VEIL D G E RY GP LKV Y R P S Sbjct: 229 LARKECDFEGRPLPGGG--------SGMTPSSTVSSNGRDTHVVFTGLHNTGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTRITPPVSA 368
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.850e-42 Identity = 90/170 (52.94%), Postives = 107/170 (62.94%), Query Frame = 1 Query: 4 SLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRAGPGASVAAAGEEDGWAYRGRRTIASGPPP 513 S ECD EGRP P G P P RQC+LVFTGL TG DL SL VTA FGVD+VH+ VTSP+Q+G++GR Y+GVFYPS+QEIWPELY+ +++ VEVD+ VEI DSG E++Y GPQLKV Y RA P A A A GRRT + P P Sbjct: 380 SRNECDFEGRPTPP-------TDPKSGEPPIPSSTD-RQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSG-EYQYVGPQLKVTYLRAAPPADAAEATPRPA----GRRTASRAPIP 536
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: A0A6H5JMY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY9_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.630e-28 Identity = 60/113 (53.10%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 1 LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVE 339 +S +ECDLEGRP R+G + PI R+ + FTGLE+TGHDL L VTA+FGVDAVHQ A VTSP++VG GR S VFYP +QEIWPELY +++ VE Sbjct: 115 VSRKECDLEGRPI-----ARIGNSLT---PITASSTDVRESLIEFTGLEKTGHDLRGLCVTAIFGVDAVHQIACVTSPIEVGPSGRACSRVFYPGMQEIWPELYNTSNIRLVE 219
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 2.330e-15 Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 124 YLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEH-RYTGPQLKVAYHR 423 +LVFTGL G LD L T F +++ A P+QVG D RVY V YP++ E+WPE+Y V+ V+VD+ + + SG + RY G +LKV Y R Sbjct: 37 HLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVR--SGHKTIRYPGTELKVTYRR 135
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 4.990e-14 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 82 GAPIAPGPAHPR---QCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQV--GADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRAGPG 435 G+P A + PR + YLVF GL ETG L +L A F + Q + PLQ G++GRVY V YPS+ E+WPE+Y + ++ V+VD+ VE+ SG + Y +L Y R G Sbjct: 305 GSPFAAALSVPRSDDEQYLVFIGLGETGRPLPALAARAQFSANPGRQAERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSG-DSLYLATELMAMYRRPSGG 426
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 6.450e-14 Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 103 PAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRAGPGAS 441 P + +LVF GL ETG L +L A F + + + PLQ G++GRVY V YPS+ E+WPE+Y ++ V+VD+ VE+ G+ Y +LK Y R PG S Sbjct: 233 PRSDDEQHLVFIGLGETGRPLPTLAARAQFSANPGRKAERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVR-SRYGDSLYLATELKAMYRRP-PGGS 343
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 8.210e-12 Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 1 LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSG-----VFYPSLQEIWPELYAMRDVQSVEVDIEVEILCDSGGEHRYTGPQLKVAYHRA 426 L QECD +GR A ++ G + + + C L F G+E + + L VTA F V T+P + AD +G + YPS+++IWPE+Y+ R V+ VEVD+ V++ S G+ ++ P +KV Y RA Sbjct: 432 LLRQECDFDGRSAAAVPAASATSASANG--VCASSSTKKPCRLRFKGIEGVDYGIRDLAVTAQFSVGPPGNLVG-TAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVR-SSDGKWVHSWPSVKVMYRRA 574
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Match: A0A6H5L3B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B8_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.040e-11 Identity = 43/120 (35.83%), Postives = 58/120 (48.33%), Query Frame = 1 Query: 4 SLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEETGHDLDSLHVTALFGVDAVHQTATVTSPLQVGADGRVYSGVFYPSLQEIWPELYAMRDVQSVEVDIEVEIL 363 SLQ CD GR A A + + +LVFTGL G DLD L T F +++ A P+QVG D RVY V +P++ E+WPE+Y V+ V+V + IL Sbjct: 11 SLQVCDFHGRAV-----AHPQESVDSSALAACFMSGSLEQHLVFTGLVGAGPDLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKFPTMNELWPEIYQNVAVEVVQVRLFPSIL 125 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5553.13861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5553.13861.1 >prot_L-elsbetiae_contig5553.13861.1 ID=prot_L-elsbetiae_contig5553.13861.1|Name=mRNA_L-elsbetiae_contig5553.13861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp LSLQECDLEGRPFPAGGGGRMGMVTSGGAPIAPGPAHPRQCYLVFTGLEEback to top mRNA from alignment at L-elsbetiae_contig5553:433..3429+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5553.13861.1 ID=mRNA_L-elsbetiae_contig5553.13861.1|Name=mRNA_L-elsbetiae_contig5553.13861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2997bp|location=Sequence derived from alignment at L-elsbetiae_contig5553:433..3429+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5553:433..3429+ >mRNA_L-elsbetiae_contig5553.13861.1 ID=mRNA_L-elsbetiae_contig5553.13861.1|Name=mRNA_L-elsbetiae_contig5553.13861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig5553:433..3429+ (Laminarionema elsbetiae ELsaHSoW15)back to top |