mRNA_L-elsbetiae_contig5552.13858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5552.13858.1
Unique NamemRNA_L-elsbetiae_contig5552.13858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5552.13858.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.020e-86
Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 3
Query:  828 GYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLDAFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQIERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVDFDDNDGYDDGYDSDPG-IAGAESDGMY 1325
            GYVTE YDDFPDY+PNMGAWGESKPG TPEA PAD LDLDAFWNGGAEAVDFHDIPV DRP +VEMKQFID+EGLTMLPSETELLERDIQ ER+ARAKARKERFADEPDEDLVDD L+D+PL   E+EVGVIDVPPPPVDFDD+DGYDDGYD D G + GAESDGMY
Sbjct:    9 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDD-EIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174          
BLAST of mRNA_L-elsbetiae_contig5552.13858.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 6.810e-84
Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 3
Query:  828 GYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLDAFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQIERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVDFDDNDGYDDGYDSDPGIAG-AESDGMY 1325
            GYVTE YDDFPDY+PNMGAWGESKPG+TPEA PAD LDLD FWNGGAEAVDFHDIPV DRP +VEMKQFID+EGLTMLPSETELLERDIQ ER+ARAKARKERFADEPDEDLVDD L+D+PL   E+EVGVIDVPPPPVDFDD+DGYDDGYD D G  G AESDGMY
Sbjct:   71 GYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDD-EIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5552.13858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ37_ECTSI1.020e-8685.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNX0_9PHAE6.810e-8485.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5552contigL-elsbetiae_contig5552:3..5407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007610.1
Exons4
Model size2409
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5552.13858.1prot_L-elsbetiae_contig5552.13858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5552 800..4326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.306063-UTR-L-elsbetiae_contig5552:2..7991622816586.306063-UTR-L-elsbetiae_contig5552:2..799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5552 3..799 +
1691683665.9004781-UTR-L-elsbetiae_contig5552:2..7991691683665.9004781-UTR-L-elsbetiae_contig5552:2..799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5552 3..799 +
1622816586.365225-UTR-L-elsbetiae_contig5552:4326..54071622816586.365225-UTR-L-elsbetiae_contig5552:4326..5407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5552 4327..5407 +
1691683665.9504507-UTR-L-elsbetiae_contig5552:4326..54071691683665.9504507-UTR-L-elsbetiae_contig5552:4326..5407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5552 4327..5407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.3195195-CDS-L-elsbetiae_contig5552:799..9171622816586.3195195-CDS-L-elsbetiae_contig5552:799..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 800..917 +
1691683665.910115-CDS-L-elsbetiae_contig5552:799..9171691683665.910115-CDS-L-elsbetiae_contig5552:799..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 800..917 +
1622816586.330102-CDS-L-elsbetiae_contig5552:2358..24901622816586.330102-CDS-L-elsbetiae_contig5552:2358..2490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 2359..2490 +
1691683665.9213722-CDS-L-elsbetiae_contig5552:2358..24901691683665.9213722-CDS-L-elsbetiae_contig5552:2358..2490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 2359..2490 +
1622816586.3399353-CDS-L-elsbetiae_contig5552:2961..30651622816586.3399353-CDS-L-elsbetiae_contig5552:2961..3065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 2962..3065 +
1691683665.9306228-CDS-L-elsbetiae_contig5552:2961..30651691683665.9306228-CDS-L-elsbetiae_contig5552:2961..3065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 2962..3065 +
1622816586.3554344-CDS-L-elsbetiae_contig5552:4149..43261622816586.3554344-CDS-L-elsbetiae_contig5552:4149..4326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 4150..4326 +
1691683665.9398308-CDS-L-elsbetiae_contig5552:4149..43261691683665.9398308-CDS-L-elsbetiae_contig5552:4149..4326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5552 4150..4326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5552.13858.1

>prot_L-elsbetiae_contig5552.13858.1 ID=prot_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MCTYNRRPRWGYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLD
AFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQ
IERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVD
FDDNDGYDDGYDSDPGIAGAESDGMY*
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mRNA from alignment at L-elsbetiae_contig5552:3..5407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5552.13858.1 ID=mRNA_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5405bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:3..5407+ (Laminarionema elsbetiae ELsaHSoW15)
TTATAAACACAGCAAGTTGTCGAAATGCCCGATAATTTTCAAAAAATGGC GCACCATCTCCTTGGCCAGTAGGCTAAGAGATATGTCGAAGGGCATCCCA AAAGAGTGCCATAGCCGGAGGGCAGGCTTCAAACAGGTAAGGGCATCCCA AAAGAGTGCCATAGCCGGGGGGCAGGCTTCAAACAGATCCTTGTGCTTCG AGTGGCGGTGTGACAAAAGAGCACTTTTGAACTGCTGTACAAATGCGGCC TAACTTGGACCTCAGCCTATGGCGGCGGGTGCCATGACAGGTACGCCCAA CCAGAGGCTACGACGAGACACAGGTGTACTTGGATAGTACCTTAGAGCAA TCTCTGGCGTTCTCAGCAGCAGCCCCGTTTTGAAATGGCAGTGACGTTTG CCATGTCGACAGCTCTACAGCGGTTGATTAAGGTTTGATACAAGGAACGG AGGGCAGCAAAGGCTCTACAGCACCGCTAAAGAAACGAAGGCCACGCGAT GGTAGCTGTTGTCCTTGGCTTTCGATAAATATGTTGACCTAGAGGCTAAG GAGAATGTGCGGCATTCTAAATTGCGATGGCGCTTAGTGCAAAATTGAAA AGAGGCCAAAAACACAGTTGCGCCGCAAGTAACCGACGGTTTTTTGTGAG TTCAGCCGACAACCTGCTGACCACGTCAGCTTTGGCCGGGTGCCGACCAC AAAACACAACATGCCTCTTCGCCTTTTCTGGGGTTTGGCCTTTTCCCCTT CAGCCACGTGATCGTGGCCAGCCTTAACTCGTTCTGTTTGTATATACATG TGTACTTACAATCGGCGTCCCAGATGGGGGTACGTGACTGAGGAGTACGA CGACTTCCCAGACTACATCCCGAACATGGGTGCTTGGGGGGAATCCAAGC CGGGGGCTACCCCAGGTAAGCGAGAGAGAGGGGGGGGAGCCCGTCGTGTA CAGCGAGGTGACGGGATGTCATGCGGAGGGAGAGATCCCCTGGTGTTTCT ACCCCACAAGTGCAGACTCGGAGAGAGGTCTCGACGATTTCTGGAACGGG GGAGAGGAGAAAATAAAGACAAGAGGTGTGTCAGCCGTCACAGCTGCCTC GAAACAAAAGCAACTCTTCTTCCCGAATATATACAAGCTGGTTCATATTG AATGCCCAAAATTTATTCCCCGGTGTTTTCTCACGCCGTTTTTTCGAGTT AGACCATGAAATTTTGCACACATGATCAGTAAGGCATTATCAAACTCTCC AGGAAGGGGCTTTTTTGATTTCGGGTTTTGTTGTCGAGATAGCCAGGATT TCCCCCCCCCCCCGGTCAAATAGATCGACCGCGACCATGGATAAAGAGGC AGCAAAATTAAAAATTAAAAAAGCCCCCTGATCCGTCTTTTTATCATCAC CCGTTGTACATGTGTGCAAAATTTCAAGGTTTAACTCGTGAAAACGGCGT GAGAAAACGCCAAAACGTGCTCGGAAGTGTAAAAACGTCTGCATACCCCC CTAATTACTTGATTAAAGTATACTTTGGATATTTTTCACGTTTTTTTCAC GGCAAACGACCATGCGGCGTCAGTCTTTTGAGTTATCCAACCAAACTTGG TACGAATGTTCTTTGGGGGACGGCGGAGCGCGTGGAGGTTTTTGTTTTGC GCAGAGGGTTCTGTACTGGCTATCGGGGGTCCTGAGGCCGGCGGGACCCC CGAAAGCCAGTACAGACCCACCCACCCACCGGAACACCCCGGAATATTTT TTTTCATATTTGCAGCATCAATATCCATCACGATGTCAAGTTTGAAATTG GTTGAATCTTTTTTCGGGGAGATATGCAAGAAACCGTTGGCGCCGGCTCT ACGGTCTTAGTCCTATATCACCAGGAAAAATTGACGTCGTCGTAACCGAA ATATCATATTTTTGGGTATAACTCGATGCCAGGACAACCGTTTTCAAAAC AGTTTTTTTGGTTAGATTCCCTAGAGGATCGCAATTGCCATGATACAAAA AGTGTGGAGATTGAACGGCGTATTGGGTCGAAAATTCGTATTTTTAGTAC TAGACAGTTTGGAGGCCGCTGATTGGCCGAGACTACCTTTCCGCCTATAG CTTCGCACCCAAGCCCAAAATTCGCAAAAGGAACATGTCACCTTGTTGAG TCGCTCGTAGGCAACACTACGATACCGATTTCATCAAAATTGAGCCTGTA TTGCGTTCGTTATTAGTCGGGGAATGAATTTTGGGTGTTCTTCTGAACCA GCTTGTAGACTACTTTTTTTGTTGTAACACCTACATACTTATACTAAATA CATATGGTACCATATGTTGCACGTTGCCTGATCACGTGTTCGGCCTGACT GACCAGAGGCGTCCCCGGCGGACATGTTGGATCTGGATGCTTTCTGGAAC GGAGGGGCGGAGGCGGTGGACTTTCACGACATTCCGGTTGACGACCGCCC TTGCTACGTGGAGATGAAGCAGTTCATTGACGACGAAGGTCGGTTTTTAC ATTCTTACCCGTGGTTTTGGCGAGAAATCGATTTATGGCGTACTTATGCC GGGCGCGTTGGCGGGGAGGGGGGGGGGCAGCAAACGGCGTTTTGTCTCTG TAGCCTATCGTAGAGCCCACGCGCTTGCTGCGATGATCGCAAAAGCCAAT CGAAAATCCGCCGATTCCAATCCAGGCGCGTCTTTATTTACGTGTAGTGC GCTTGTGTATGTGGAGGACAACAGTAGTACGCTGTAAAACGTATCGGCTT GACGAAAAACGGTCCATTGCGCTGTTTCTTAAGCTCAGACATCACCGTGG GAAGAAAACAGTGCGTGCGCTTTTTTGTGAAACTGGCAAAGTAATCTCCA GTCAAGCTACAGTGAAAGATTCTACACGTTTGAGAAGTATTTCTATGTAG TATGTATGAGCTGTTTCGTTCGCTTGCTTAATCGCCAATCTTCCTGTCTT ACCTAAAAGGGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGG GATATCCAGATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTT TGCGGACGAGCCGGTACGTGCGCGCGCGCGGGGGGGGGGGGGGGGGGGGG AGTTTGAAATAGGGGCCGCAGGGAGGATGGGGGGGGAATTAGGCATTACT ACCCCCGCCACGAAACNNNNNNNNNNAAGAGGAGGAAGAGGGGGGGGGGG GGGAGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGTCGATTGTTGAAATATGGGCCACAGG CAGTATGGTGGGATATGTAGACATTCCTGACCCCTCCAGGCACCGCAGGG CACGCCAGACGTGCCCCCCCCCCCCCATTTTTTTGTTTTCCTGCATTGTC GCCGCCGCCGCCGCCGCCGCTGCTGCTGTTGCTGTTGTGTGTGTTGTAAA CCGTGGGCTTTGTCGTTGAGTGTTTTCATGGTCTTGAACCCCAGAAAGCG CCGTTGGTGTGGTATGTAGGTATACAGACACTGGCTGTGAGGCGCCAGCC CTGTGAGGCCGATGTGATCACTCTCAAGGCGTCTTGCAAAATACGCTTTT TAGTCCTTAAGTCGGGCCACCCTACTGCGTAGTTTTTGCGCTCTGCATAA AGATAGATTCGCCTGCTAGATCTATGCAGCTACAAAAGCGCCATTTCGAT TCCATTTCTCTACTGTACATGCTTCGAAAAGTTGGAGAGGTGCTGCGATC GGTTATTCATTTCGTAGCTTAACGACCGGGGTTTATATTTCGAGCTGGTT TCTTCTTCGTGTGTTAACACCCTTCTCTTCAGTTCTGCATCCTTCTTCTA CCCGAAAATTTAGCATGCATGTGTGGCGCTCTTGACATCGCTTGTCACAA ATACACTTTTCTGATCGAAATAAACCCCCAACAATACAAGTAGTACACCG CCTCATTGTTTCCTTACTATGCATTTTTTTTTGCATCGCCCCTGCCCGTT TTTCCTGCGGCTCTCCTGCACGGCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCTGTACGTGCGTGCTCGCGTGTCGGCGCGAATCGGCTCCGATAAACAA TTCGGTGAAAAATAACCATGTACATGGTAATATTTATATCGGCACAGGAT GAGGATCTTGTGGACGACGCCTTGGAGGACGTGCCGCTCGGCACGCTGGA GGTTGAGGTGGGCGTGATCGACGTCCCGCCGCCGCCCGTGGACTTCGACG ACAACGACGGCTACGACGACGGTTACGACTCGGACCCGGGCATTGCAGGG GCGGAAAGCGACGGGATGTACTAAACTCGGGCCCTGGCATTGCACGGGCA AAAGCGAAGGCAGAAAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATT GTAGGAGAAGACAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATCGCA GGGGCAGACAGCGAAGGGATGTGCTTAACTGGGACCCGGGCAAAAGCGAA GGCAGAAAGCGAAGGGGTGTGCTAAACTCGGACCCGTGCATTGCAGGGGC AGACAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATTGCAGGGGAAGA CAGCGAAGGGAGGTGTGCTAAACTGGGACCCGGGCATTGCAGGGGAAGAC AGCGAAGGGAGGTGTGCTAAACTCGGACCCGGGCATTGCAGGGGCAGACA GCGAAGGGGTGTGCTAAACTCGGACCCGGGCGTTGCAGGGGAAGACAGCG AAGGGGTGTGCTTAACTGGGACCCGGGCATTGCAGGGGCAAACAGCGAAG GGGTGTGCTAAATAAACCCCCTTTCTCTTGTTTTGGAAGAGAGGCCGGTT TGGTTGGCGGGTGGTTGTTGCTCGGTCTTTGAATCCGAGACCTGCGGATC CGCCATGGGGCTTGCTTGGTCGGTTACGAAACGAGCGGCAGTGTATCTGG GCGAGGTCGGGCAATGGTTCTAGCTATTGCAGCTCCCTCTCGCACGTGAG AGGCCTCTGGTTTCGGTTGCCAGTAAATAGCTGCAACAACAGCGCGTTGT CTGTCGGCGATGCGGTGAGAACCATTTGTTTAGCAGACCCGCGACGGCGG CGGCAGCAGAATCGGAGAAAAATTGTCGGGCATTGCGGTGATTTGTAAAC ATGAACGCGATTGGGGTGACCAGCCGCCAGTGTCAAAATTCCTTGCAGCC TCCCTTTGAAGATCTACCGGTCCGATCTCCGCCGGCGGGGGGGGGGCATT TGCCCCATCATTCACCGCGCTCGGCGAACGTTGGCTGTCGCGGTACCTGG TTGACTCTTGTGACCCTTTTTCGAAATCGGATTTGGGCTTGACGTCAACG TGGAGTTAGCTGTACCACACTGTGTGCCTTTAACTGCTTTTGGCCGTTTT GTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5552:3..5407+

>mRNA_L-elsbetiae_contig5552.13858.1 ID=mRNA_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:3..5407+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTACTTACAATCGGCGTCCCAGATGGGGGTACGTGACTGAGGAGTA
CGACGACTTCCCAGACTACATCCCGAACATGGGTGCTTGGGGGGAATCCA
AGCCGGGGGCTACCCCAGATGTGTACTTACAATCGGCGTCCCAGATGGGG
GTACGTGACTGAGGAGTACGACGACTTCCCAGACTACATCCCGAACATGG
GTGCTTGGGGGGAATCCAAGCCGGGGGCTACCCCAGAGGCGTCCCCGGCG
GACATGTTGGATCTGGATGCTTTCTGGAACGGAGGGGCGGAGGCGGTGGA
CTTTCACGACATTCCGGTTGACGACCGCCCTTGCTACGTGGAGATGAAGC
AGTTCATTGACGACGAAGAGGCGTCCCCGGCGGACATGTTGGATCTGGAT
GCTTTCTGGAACGGAGGGGCGGAGGCGGTGGACTTTCACGACATTCCGGT
TGACGACCGCCCTTGCTACGTGGAGATGAAGCAGTTCATTGACGACGAAG
GGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGGGATATCCAG
ATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTTTGCGGACGA
GCCGGGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGGGATAT
CCAGATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTTTGCGG
ACGAGCCGGATGAGGATCTTGTGGACGACGCCTTGGAGGACGTGCCGCTC
GGCACGCTGGAGGTTGAGGTGGGCGTGATCGACGTCCCGCCGCCGCCCGT
GGACTTCGACGACAACGACGGCTACGACGACGGTTACGACTCGGACCCGG
GCATTGCAGGGGCGGAAAGCGACGGGATGTACTAAGATGAGGATCTTGTG
GACGACGCCTTGGAGGACGTGCCGCTCGGCACGCTGGAGGTTGAGGTGGG
CGTGATCGACGTCCCGCCGCCGCCCGTGGACTTCGACGACAACGACGGCT
ACGACGACGGTTACGACTCGGACCCGGGCATTGCAGGGGCGGAAAGCGAC
GGGATGTACTAA
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