mRNA_L-elsbetiae_contig555.13855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig555.13855.1
Unique NamemRNA_L-elsbetiae_contig555.13855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig555.13855.1 vs. uniprot
Match: A0A6H5JC61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC61_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.100e-32
Identity = 74/89 (83.15%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:   28 RGAKPVGQAAAATSASKTSTSVGVAWGGAGAANGPSAQPLGERSSVSVVMTRGKGPMGVASPTASPHLQAHTPARLQEEWPSLADTAAP 294
            RGAK  GQAAA  +A KTS S GVAWGGAGA NGP AQ LGERS V+VV TRGKGPMGVASPTASPHLQAH PARLQEEWPSLADTAAP
Sbjct:  365 RGAKATGQAAAVPTALKTSGSTGVAWGGAGATNGPIAQSLGERSGVAVV-TRGKGPMGVASPTASPHLQAHNPARLQEEWPSLADTAAP 452
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig555.13855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC61_9PHAE2.100e-3283.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig555contigL-elsbetiae_contig555:25040..25883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size384
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.1166725-CDS-L-elsbetiae_contig555:25040..253701622816586.1166725-CDS-L-elsbetiae_contig555:25040..25370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 25041..25370 -
1691683665.809036-CDS-L-elsbetiae_contig555:25040..253701691683665.809036-CDS-L-elsbetiae_contig555:25040..25370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 25041..25370 -
1622816586.1289597-CDS-L-elsbetiae_contig555:25832..258831622816586.1289597-CDS-L-elsbetiae_contig555:25832..25883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 25833..25883 -
1691683665.818346-CDS-L-elsbetiae_contig555:25832..258831691683665.818346-CDS-L-elsbetiae_contig555:25832..25883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 25833..25883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig555.13855.1prot_L-elsbetiae_contig555.13855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig555 25041..25883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig555.13855.1

>prot_L-elsbetiae_contig555.13855.1 ID=prot_L-elsbetiae_contig555.13855.1|Name=mRNA_L-elsbetiae_contig555.13855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
ATAAQRVAARGAKPVGQAAAATSASKTSTSVGVAWGGAGAANGPSAQPLG
ERSSVSVVMTRGKGPMGVASPTASPHLQAHTPARLQEEWPSLADTAAPAP
APTPTPAAPTTNRTSRNRRKKEKQQQQ
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mRNA from alignment at L-elsbetiae_contig555:25040..25883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig555.13855.1 ID=mRNA_L-elsbetiae_contig555.13855.1|Name=mRNA_L-elsbetiae_contig555.13855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=844bp|location=Sequence derived from alignment at L-elsbetiae_contig555:25040..25883- (Laminarionema elsbetiae ELsaHSoW15)
GCAACGGCAGCGCAGCGGGTGGCGGCAAGGGGGGCTAAACCAGTAGGACA
GGTGATACATGTTGTGGCAGACCGGGCTCGAATTGCCTGTAGGGATGCTT
CTGCTGTTATTCCGTGTTTGCGCGCCGATGGCCAACACGCATGTGAACGC
AGCACACCACGAGGGACGCCAATACACAGGACGATTCTCACCACCGCCGT
GTCAGAAACTGAAGTCTGACGTACTTTCGAAATGTGCCCCAAGATCAGTT
TTGCAGCGGGCTGTTCTCAGGATACACGTATTTACAAGCAGACGAAGGAA
GGCATGACATCATTTGCGCTTTGGTACGTGTGCGTGCTTCCACCTCCTTC
CCCGACGCTCATTCGCCAGCATTCCTTTGCCTGCGATGCTATGATTTTTA
GATTAGGGTTATATAAGGGCTGTATGTCCTATCTATCATAGGAGTCGATT
GTGGTACCAACGCAACGCTGTCCCCTTGGCTCTCTGCCGTGTTGATTGCA
ACTCACTTTGCAGGCTGCTGCAGCGACATCGGCGTCGAAGACCTCGACTT
CCGTGGGCGTTGCGTGGGGCGGGGCTGGGGCAGCGAACGGGCCAAGTGCG
CAGCCGCTGGGTGAGCGAAGCTCGGTGTCGGTTGTGATGACCCGAGGAAA
AGGGCCCATGGGCGTGGCTAGCCCAACTGCCTCACCCCACCTCCAAGCGC
ACACCCCCGCGCGCCTGCAGGAGGAGTGGCCGTCGCTTGCCGACACAGCC
GCGCCGGCGCCGGCCCCAACGCCGACCCCTGCCGCCCCGACCACGAATCG
CACTAGTAGGAACCGCCGCAAGAAGGAGAAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig555:25040..25883-

>mRNA_L-elsbetiae_contig555.13855.1 ID=mRNA_L-elsbetiae_contig555.13855.1|Name=mRNA_L-elsbetiae_contig555.13855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig555:25040..25883- (Laminarionema elsbetiae ELsaHSoW15)
GCAACGGCAGCGCAGCGGGTGGCGGCAAGGGGGGCTAAACCAGTAGGACA
GGCAACGGCAGCGCAGCGGGTGGCGGCAAGGGGGGCTAAACCAGTAGGAC
AGGCTGCTGCAGCGACATCGGCGTCGAAGACCTCGACTTCCGTGGGCGTT
GCGTGGGGCGGGGCTGGGGCAGCGAACGGGCCAAGTGCGCAGCCGCTGGG
TGAGCGAAGCTCGGTGTCGGTTGTGATGACCCGAGGAAAAGGGCCCATGG
GCGTGGCTAGCCCAACTGCCTCACCCCACCTCCAAGCGCACACCCCCGCG
CGCCTGCAGGAGGAGTGGCCGTCGCTTGCCGACACAGCCGCGCCGGCGCC
GGCCCCAACGCCGACCCCTGCCGCCCCGACCACGAATCGCACTAGTAGGA
ACCGCCGCAAGAAGGAGAAGCAGCAGCAGCAGGCTGCTGCAGCGACATCG
GCGTCGAAGACCTCGACTTCCGTGGGCGTTGCGTGGGGCGGGGCTGGGGC
AGCGAACGGGCCAAGTGCGCAGCCGCTGGGTGAGCGAAGCTCGGTGTCGG
TTGTGATGACCCGAGGAAAAGGGCCCATGGGCGTGGCTAGCCCAACTGCC
TCACCCCACCTCCAAGCGCACACCCCCGCGCGCCTGCAGGAGGAGTGGCC
GTCGCTTGCCGACACAGCCGCGCCGGCGCCGGCCCCAACGCCGACCCCTG
CCGCCCCGACCACGAATCGCACTAGTAGGAACCGCCGCAAGAAGGAGAAG
CAGCAGCAGCAG
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