mRNA_L-elsbetiae_contig5542.13845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5542.13845.1
Unique NamemRNA_L-elsbetiae_contig5542.13845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.570e-31
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKE 171
            ++VICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEE+TFALR GNSDSANEFKE
Sbjct:  127 MKVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEFKE 183
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: D8LNF2_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 6.760e-30
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEV 174
            ++VICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEE+TFALR GNSDSANEFKEV
Sbjct:  304 MKVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEFKEV 361
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A1Z5JQI1_FISSO (RanBD1 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI1_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-22
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERLCG 213
            ++VI NHV DP+I L+PN GSDRSWVW+AFDF EG+L+E  FA+R G+SD ANEF++     + E E+L G
Sbjct:    1 MKVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEFRDKFLECQSEMEKLLG 71
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A7S3Q898_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q898_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.480e-22
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERL 207
            ++VI NH  DPRI+L PNAGSDRSWVW+AFDF EG+L+E  FALR  +S+ A+EFK   +  +KE E+L
Sbjct:   10 MKVITNHALDPRIILNPNAGSDRSWVWSAFDFAEGELKETVFALRFADSEIADEFKTKFEESQKEMEKL 78
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.000e-22
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERL 207
            +++I NHVADPRIVLKPN GSDRSWVW A+DF + +L E  FA+R G+SD+ANEFKE  +  +K+  R+
Sbjct:  123 MKIIANHVADPRIVLKPNLGSDRSWVWTAYDFVDNELVETVFAIRFGSSDAANEFKEKFEEVKKDMARI 191
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A1Z5JPA6_FISSO (Ran-binding protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPA6_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-21
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERLCG 213
            ++VI NHV DP+I L+PN GSDRSWVW+AFDF EG+L+E  FA+R G+SD ANEF++     + E E+L G
Sbjct:  107 MKVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEFRDKFLECQSEMEKLLG 177
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A7S1VE37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE37_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.040e-21
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERL 207
            ++VICNHV DPRI L+PN GSDRSWVW+AFDF EG L+E  FA+R  +SD A EFK   +  +KE +++
Sbjct:  101 MKVICNHVLDPRITLEPNVGSDRSWVWSAFDFAEGDLKETVFAIRFSSSDVAKEFKAKFEECQKEMKKI 169
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: B8CAX3_THAPS (RanGAP, ran-binding protein 1-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAX3_THAPS)

HSP 1 Score: 90.1 bits (222), Expect = 5.510e-21
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREK 192
            ++VI NH  DPRIVL+PNAGSDRSWVW+ FDF +G+LEE  FALR  NS+ A EFKE  +  +K
Sbjct:  125 MKVIANHALDPRIVLEPNAGSDRSWVWSCFDFADGELEEKVFALRFANSEVAGEFKEKYEKHQK 188
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.030e-20
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFK 168
            +++ICNHV DPRI L+PN GSDRSWVW+A+DF+ G+LE+  FA+R GNSD A E+K
Sbjct:  173 MKIICNHVVDPRIELEPNVGSDRSWVWSAWDFSSGELEDTIFAIRFGNSDGAKEYK 228
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BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Match: A0A7S2EXM6_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EXM6_TRICV)

HSP 1 Score: 88.2 bits (217), Expect = 4.490e-20
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSDSANEFKEVGQTREKERERL 207
            ++VI NH  DPRI L+PNAGSDRSWVW+AFDF EG+L E  FALR  +SD AN+FK      + E E+L
Sbjct:  103 MKVIANHAIDPRIKLEPNAGSDRSWVWSAFDFAEGELVETVFALRFADSDIANDFKTKFTESQSEMEKL 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5542.13845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI29_9PHAE3.570e-3192.98RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNF2_ECTSI6.760e-3093.10RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1Z5JQI1_FISSO1.110e-2257.75RanBD1 domain-containing protein n=1 Tax=Fistulife... [more]
A0A7S3Q898_9STRA3.480e-2259.42Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A835YXP9_9STRA8.000e-2259.42RanBP1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A1Z5JPA6_FISSO1.600e-2157.75Ran-binding protein 1 n=1 Tax=Fistulifera solaris ... [more]
A0A7S1VE37_9STRA4.040e-2157.97Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
B8CAX3_THAPS5.510e-2162.50RanGAP, ran-binding protein 1-like protein (Fragme... [more]
A0A8J2T1Z3_9STRA2.030e-2064.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EXM6_TRICV4.490e-2059.42Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5542contigL-elsbetiae_contig5542:10663..10875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.2e-25
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.935813-CDS-L-elsbetiae_contig5542:10662..108751622816584.935813-CDS-L-elsbetiae_contig5542:10662..10875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5542 10663..10875 +
1691683664.9120786-CDS-L-elsbetiae_contig5542:10662..108751691683664.9120786-CDS-L-elsbetiae_contig5542:10662..10875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5542 10663..10875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5542.13845.1prot_L-elsbetiae_contig5542.13845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5542 10663..10875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5542.13845.1

>prot_L-elsbetiae_contig5542.13845.1 ID=prot_L-elsbetiae_contig5542.13845.1|Name=mRNA_L-elsbetiae_contig5542.13845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
LQVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEITFALRLGNSD
SANEFKEVGQTREKERERLCG
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mRNA from alignment at L-elsbetiae_contig5542:10663..10875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5542.13845.1 ID=mRNA_L-elsbetiae_contig5542.13845.1|Name=mRNA_L-elsbetiae_contig5542.13845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=213bp|location=Sequence derived from alignment at L-elsbetiae_contig5542:10663..10875+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGGTGATCTGCAACCACGTGGCGGACCCGCGCATCGTCCTCAAGCC
GAACGCCGGCTCCGACCGATCTTGGGTGTGGAACGCCTTCGACTTCACGG
AGGGGCAGCTGGAGGAGATCACGTTCGCCCTGCGCCTGGGCAACTCCGAC
TCTGCCAACGAGTTCAAGGAGGTGGGACAGACTAGAGAGAAAGAAAGAGA
GAGGCTCTGTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5542:10663..10875+

>mRNA_L-elsbetiae_contig5542.13845.1 ID=mRNA_L-elsbetiae_contig5542.13845.1|Name=mRNA_L-elsbetiae_contig5542.13845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig5542:10663..10875+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGGTGATCTGCAACCACGTGGCGGACCCGCGCATCGTCCTCAAGCC
GAACGCCGGCTCCGACCGATCTTGGGTGTGGAACGCCTTCGACTTCACGG
AGGGGCAGCTGGAGGAGATCACGTTCGCCCTGCGCCTGGGCAACTCCGAC
TCTGCCAACGAGTTCAAGGAGGTGGGACAGACTAGAGAGAAAGAAAGAGA
GAGGCTCTGTGGTCTCCAGGTGATCTGCAACCACGTGGCGGACCCGCGCA
TCGTCCTCAAGCCGAACGCCGGCTCCGACCGATCTTGGGTGTGGAACGCC
TTCGACTTCACGGAGGGGCAGCTGGAGGAGATCACGTTCGCCCTGCGCCT
GGGCAACTCCGACTCTGCCAACGAGTTCAAGGAGGTGGGACAGACTAGAG
AGAAAGAAAGAGAGAGGCTCTGTGGT
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