mRNA_L-elsbetiae_contig5542.13844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: D7FU74_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU74_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.270e-39 Identity = 106/117 (90.60%), Postives = 107/117 (91.45%), Query Frame = 1 Query: 1 MSDFAQLAAKAKEEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL 351 MSDFAQLAAKAKE+GV XXXXXXXXXXXXXXXXXXXXXXXXXXXX EESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL Sbjct: 1 MSDFAQLAAKAKEDGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------EESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL 109
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE) HSP 1 Score: 132 bits (333), Expect = 3.420e-36 Identity = 106/118 (89.83%), Postives = 107/118 (90.68%), Query Frame = 1 Query: 1 MSDFAQLAAKAKEEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 MSDFAQLAAKAKE+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ Sbjct: 1 MSDFAQLAAKAKEDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------STAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 110
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A7S2XZR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZR9_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.070e-27 Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 Query: 166 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 ESTA FEPVVQL+E+EVKTHEE+EEVLWK R KLF+FGETLLNKGTGQK W ERGIGE KFL+ Sbjct: 68 ESTAHFEPVVQLDEIEVKTHEEEEEVLWKWRGKLFVFGETLLNKGTGQKTWNERGIGEFKFLK 130
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.220e-25 Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 Query: 160 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 E E T FEPVVQL+EVEVKTHEEDE+VL+KMRAKLF+FGETLLNKG+G K W ERG+GEVKFL+ Sbjct: 42 EAECTTVFEPVVQLDEVEVKTHEEDEQVLYKMRAKLFVFGETLLNKGSGTKTWNERGVGEVKFLK 106
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.940e-24 Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1 Query: 139 SGTATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 S A +ESTA+F PVVQL+EVEVKTHEEDE+V +K+RAKLF F ETLLNKG+G+KEW+ERG+GEVK L+ Sbjct: 85 SAQANPEAQESTAEFTPVVQLDEVEVKTHEEDEDVDFKIRAKLFRFSETLLNKGSGKKEWIERGVGEVKILK 156
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A7S0C0M0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0M0_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.580e-23 Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1 Query: 148 ATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 A+ PEEESTA FEPVV+LEEVE K+ EEDEE+L MR KLF++GETLL+KGTG+K W ERGIGE++ L+ Sbjct: 31 ASTPEEESTATFEPVVRLEEVETKSGEEDEEILHGMRCKLFVYGETLLDKGTGKKSWRERGIGEIRLLK 99
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A6S8ZTG3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZTG3_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 7.860e-23 Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 1 Query: 160 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 EEESTA F+PVV+LEEVEVK+ EEDEEV++ MRAKLF+FGETLL+KGTG K W ERGIGE + L+ Sbjct: 26 EEESTATFKPVVELEEVEVKSGEEDEEVVFSMRAKLFLFGETLLDKGTGNKSWRERGIGEARILR 90
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: A0A7S3NPI9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPI9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.560e-22 Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1 Query: 160 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 E EST +F PVVQL+EVEVKT EEDEE+++KMRA+L+ F ETLLNKGTG+KEW+ERG+GE K L+ Sbjct: 79 EAESTQEFTPVVQLDEVEVKTLEEDEEIIFKMRARLYRFAETLLNKGTGKKEWIERGVGEAKLLK 143
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: B7FP98_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP98_PHATC) HSP 1 Score: 95.9 bits (237), Expect = 3.970e-22 Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 Query: 142 GTATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 G PEEESTA FE VV+LEEVEVK+ EE+EEVL+ R+KLFIFGETLL+KGTG K W ERGIG+++ L+ Sbjct: 25 GGENVPEEESTATFEAVVKLEEVEVKSGEEEEEVLFSQRSKLFIFGETLLDKGTGTKSWRERGIGDIRILR 95
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Match: K0TLK1_THAOC (RanBD1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLK1_THAOC) HSP 1 Score: 95.5 bits (236), Expect = 4.590e-22 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1 Query: 148 ATAPEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 354 A APEEESTA FEPVV+L+EVEVK+ EE+EE L R+KLFI+GETLL+KGTG+K W ERGIGE + L+ Sbjct: 29 AEAPEEESTATFEPVVKLDEVEVKSGEEEEETLCTYRSKLFIYGETLLDKGTGKKTWKERGIGEARILR 97 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5542.13844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5542.13844.1 >prot_L-elsbetiae_contig5542.13844.1 ID=prot_L-elsbetiae_contig5542.13844.1|Name=mRNA_L-elsbetiae_contig5542.13844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp MSDFAQLAAKAKEEGVVAAAAAAAAGDAPETAAAAAETADEAAGGDSGTAback to top mRNA from alignment at L-elsbetiae_contig5542:6428..8484+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5542.13844.1 ID=mRNA_L-elsbetiae_contig5542.13844.1|Name=mRNA_L-elsbetiae_contig5542.13844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2057bp|location=Sequence derived from alignment at L-elsbetiae_contig5542:6428..8484+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5542:6428..8484+ >mRNA_L-elsbetiae_contig5542.13844.1 ID=mRNA_L-elsbetiae_contig5542.13844.1|Name=mRNA_L-elsbetiae_contig5542.13844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig5542:6428..8484+ (Laminarionema elsbetiae ELsaHSoW15)back to top |