mRNA_L-elsbetiae_contig554.13839.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig554.13839.1
Unique NamemRNA_L-elsbetiae_contig554.13839.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig554.13839.1 vs. uniprot
Match: D8LH18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH18_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 7.180e-86
Identity = 157/229 (68.56%), Postives = 170/229 (74.24%), Query Frame = 3 
Query:   75 MLLVSFQLGLCLGVVLAPISSVRAF-GPRPSSLALSAQQRARSLASTRSLDRRDRDHGRGVRGLRAEAEGGARGAS--EPAEVLKSAVETRKVPMTEVSEALRVLAEDAAATPAFEAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDANAGPLPIGGMRGKCWWKGGPENELAFALGAVKLGPFKIGKDKNEVKTYKFFANDGKILAAKSSSGGFALLSRV 752
            M L SF  GL   VV A +S V  F G  PS+L  +  +       TR+L+      G   R     AEGG  G    EPA VL++AVETRKVPMTEVSEALRVLA D  +  A  AEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDA AGPLPIGGMRGKCWW+GG ENELAF LGAVKLGPFK GKDKNEVKTYKFF NDGK+LAA+SS+GGFALLSRV
Sbjct:    1 MKLDSFCGGLWCLVVSASMSYVGGFVGTSPSALTPAPHR-------TRALESMSEHRGVPKRRRLLYAEGGXXGQESVEPAAVLRTAVETRKVPMTEVSEALRVLAADGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGFALLSRV 222
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BLAST of mRNA_L-elsbetiae_contig554.13839.1 vs. uniprot
Match: A0A836CJ46_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ46_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.870e-22
Identity = 65/155 (41.94%), Postives = 94/155 (60.65%), Query Frame = 3 
Query:  312 VLKSAVETRKVPMTEVSEALRVLAEDAAATPAFEAEDVEG-SWELVFSTQLKSGYMPIRELVGFYPSREEASIDANAGP-LPIGGMRGKCWWK---GGPENELAFALGAVKLGPF---KIGKDKNEVKTYKFFANDGKILAAKSSSGGFALLSRV 752
            VL+S V+TR++P   V +AL  L + A A      +DV+G +WELVFS+QL  GYMP+RE++ F  S  + S+    GP +P+GG++G C W+   G     ++F L  V LGP    K G  +   KTY FF +   +LAA+SS+GG A+L +V
Sbjct:   52 VLES-VDTRQIPAENVVQALESLEQKAQAV---RQQDVDGLNWELVFSSQLSKGYMPVREVICFDISNGKISLSTTFGPGIPLGGIQGTCSWQEPEGSQPGVVSFNLSKVLLGPIAFEKPGAKEAPPKTYSFFFSGDGVLAARSSNGGVAVLKKV 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig554.13839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH18_ECTSI7.180e-8668.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ46_9STRA5.870e-2241.94Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig554contigL-elsbetiae_contig554:32507..36326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010890.1
Exons6
Model size1099
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig554.13839.1prot_L-elsbetiae_contig554.13839.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig554 32848..36252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.422096-UTR-L-elsbetiae_contig554:32506..328471622816584.422096-UTR-L-elsbetiae_contig554:32506..32847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 32507..32847 -
1691683664.567015-UTR-L-elsbetiae_contig554:32506..328471691683664.567015-UTR-L-elsbetiae_contig554:32506..32847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 32507..32847 -
1622816584.508778-UTR-L-elsbetiae_contig554:36252..363261622816584.508778-UTR-L-elsbetiae_contig554:36252..36326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 36253..36326 -
1691683664.6405127-UTR-L-elsbetiae_contig554:36252..363261691683664.6405127-UTR-L-elsbetiae_contig554:36252..36326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 36253..36326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.433256-CDS-L-elsbetiae_contig554:32847..329041622816584.433256-CDS-L-elsbetiae_contig554:32847..32904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 32848..32904 -
1691683664.5769956-CDS-L-elsbetiae_contig554:32847..329041691683664.5769956-CDS-L-elsbetiae_contig554:32847..32904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 32848..32904 -
1622816584.4447753-CDS-L-elsbetiae_contig554:33482..336241622816584.4447753-CDS-L-elsbetiae_contig554:33482..33624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 33483..33624 -
1691683664.5886042-CDS-L-elsbetiae_contig554:33482..336241691683664.5886042-CDS-L-elsbetiae_contig554:33482..33624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 33483..33624 -
1622816584.4575665-CDS-L-elsbetiae_contig554:34149..342941622816584.4575665-CDS-L-elsbetiae_contig554:34149..34294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 34150..34294 -
1691683664.6026926-CDS-L-elsbetiae_contig554:34149..342941691683664.6026926-CDS-L-elsbetiae_contig554:34149..34294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 34150..34294 -
1622816584.4687781-CDS-L-elsbetiae_contig554:34907..349791622816584.4687781-CDS-L-elsbetiae_contig554:34907..34979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 34908..34979 -
1691683664.6120005-CDS-L-elsbetiae_contig554:34907..349791691683664.6120005-CDS-L-elsbetiae_contig554:34907..34979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 34908..34979 -
1622816584.4817805-CDS-L-elsbetiae_contig554:35443..356351622816584.4817805-CDS-L-elsbetiae_contig554:35443..35635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 35444..35635 -
1691683664.6211295-CDS-L-elsbetiae_contig554:35443..356351691683664.6211295-CDS-L-elsbetiae_contig554:35443..35635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 35444..35635 -
1622816584.4921024-CDS-L-elsbetiae_contig554:36176..362521622816584.4921024-CDS-L-elsbetiae_contig554:36176..36252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 36177..36252 -
1691683664.6313543-CDS-L-elsbetiae_contig554:36176..362521691683664.6313543-CDS-L-elsbetiae_contig554:36176..36252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 36177..36252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig554.13839.1

>prot_L-elsbetiae_contig554.13839.1 ID=prot_L-elsbetiae_contig554.13839.1|Name=mRNA_L-elsbetiae_contig554.13839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MLLVSFQLGLCLGVVLAPISSVRAFGPRPSSLALSAQQRARSLASTRSLD
RRDRDHGRGVRGLRAEAEGGARGASEPAEVLKSAVETRKVPMTEVSEALR
VLAEDAAATPAFEAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEAS
IDANAGPLPIGGMRGKCWWKGGPENELAFALGAVKLGPFKIGKDKNEVKT
YKFFANDGKILAAKSSSGGFALLSRVT*
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mRNA from alignment at L-elsbetiae_contig554:32507..36326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig554.13839.1 ID=mRNA_L-elsbetiae_contig554.13839.1|Name=mRNA_L-elsbetiae_contig554.13839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3820bp|location=Sequence derived from alignment at L-elsbetiae_contig554:32507..36326- (Laminarionema elsbetiae ELsaHSoW15)
CTGCCTTCTGAGCGCCGTAGCGCACTTCGCGTACTGCACCCGTCGGGCAC
TGGGGACGGGTTCTGCGAGTAAATATGCTCCTCGTAAGCTTCCAACTAGG
GCTGTGCCTTGGTGTTGTCTTGGCGCCAATCTCCTCTGTCCGTGCCTTCG
GTGGGTTTAATGAACAGATCTTCTTTGGACGATTACTTGCTGTGTTACCC
GACATGTACATTAGTAGTGCGTAGTAGCACAGAGAGACTGTATCTAGACT
AGATCGCTACTACGATTGCTGTGCATGCACATGTGTGTGTGTCCCGCCCC
CTGCATCGCAAGCTGCTGTCGATCGTCGTGATACTGCTGTTTGTCTCGAT
AATGTGAAAATGCAGTCTAGGTAGATACATAGCTACAGACACAGAGGAGA
GACTTGGCACTTAACTCAGCAGCTGTACTGCTGTTGTACGACAAGCTGCG
GCTCGCGGCTCTTCTTCCTCGATCCTGTAGCCTACTCATTCGTGTTCCTC
CACGCAGGCCTTGCCGCGATGTTGAAGGTTGTGAGAGAAACTTCCTGCTG
TGCGAACCTGGGGCGTGTCCCGTCCCGTTCCAGGCACGTCTCCATAGACT
ATATTGTACGAACGAACAGACCGCCGATATCAGCGAGTGACCGCCGTCTT
CGCACCCAAAATGAAACCCAAACACGCGTTTGCACCGGTAGGACCGCGGC
CGTCCTCACTTGCTCTATCGGCACAACAGCGAGCGAGGTCGCTCGCATCG
ACAAGGAGCCTCGACCGCCGCGACCGCGACCATGGCCGAGGTGTTCGTGG
TCTGCGGGCGGAAGCCGAAGGCGGTGCGCGGGGAGCTTCAGAACCAGCGG
AGGTGTTGAAGTCAGCGGTCGAGACTCGGAAAGGTAAAGGTTTAGGGGGG
TATTAATTAAAGGTTGGTAGGAAGCGGGCTCTTGGTACGGGCACGGCCGG
GGGAGGGAAACAATACCTGAGGAGTTGCATAGTCAGCCGATATGGCGGGC
CTTTTTCGAGGCTTTTTGCGAGCGTCTGTTGACCCACAAAGGAAAGATTG
TGCAGCATACGACGTTCCGATTCGTTGTTGGCTTGGAATTCGACGTGAAT
CGTCGCCGTTCTCACCCTAGGGGACCGCGGAGTACAGCAGGACGGTTGTG
CCCCGACCAGAGTCGGTGACGGTTGATTAGGGGTCAGTTGGACTGTTCTT
TTCCAAGTTTCAACGCCGTGATACTTCAGAAATTGCGTTTTCTACGCGCC
TCGATTTTCAATATACCTAATCTTTCTACTACTGGGTGCACCCATTGACT
CGCTCTCTTTATTATTCCATCTGATCTTCTTACGCCGGGGACGGCAGTGC
CGATGACGGAGGTGTCGGAGGCGCTGAGAGTGCTGGCAGAAGACGCCGCT
GCGACGCCGGCGTTTGAAGGTACGCTAAGCGCAGCACTTGGCCGTGCGCA
AAACGTTTTCGTAGACTAGACTATGTTCTCAGGAATGACTGCTGTTGCAC
ATGGTGTAAGCTGCGCGTGCTGGCTATGTAGTCTTGCCCAAGGGATCGGT
TTTTGCTGAGGTGGTCGATTGCGAGAAAACCAGCCAAAGAGTGAATGCCA
GGACAGACGGAAGCTGAGGATAAGGGTGGGGTTTACATGTTCACCTCCTC
CTGCGTGACCCCGGTTGGTTCTAGTTGTACAGATAAATGCACTGCAAAGT
GTAGTACCTCTAAGTACACCGCAAAGTGTAGTACATGTCTCCACTTGGGG
GGACTGTCGCCAACATAAATGGGAAGGACAGACACACTTACATCCCACAA
CTGCTGTTTACTCACCAGTCCACACGAAAGACGCCTCGACGCTCTTGCCG
AACGATGTGGCATGCCATGTAGTCGTCTGTTTTTCAGGGTCAGTAGCACA
CAGGAAACTTGTGGTGTAACAAACGAGACAAAGGACACGAAATAGGAGCC
TGCAGATCACCCTCGTTTCGGGACCCCTCCTCCGAAACAACAACAAGCTC
ACAAAAAACAAAACACTCGTTTTTTTGCGCAGCGGAGGACGTGGAGGGGA
GCTGGGAGCTGGTTTTCAGCACGCAGCTCAAGAGCGGGTACATGCCGATA
CGCGAGCTGGTCGGGTTCTACCCTTCCCGAGAGGAAGCTTCAATCGACGC
CAATGCTGGACCGCTTCCAATCGGGGGGTAAATATATGCTTTTAAGACCG
CCAGCGTGCAGGCAGGCGATTAGGGCTGAATGCGAGCCCTGCCCTAGTCG
TGCGTTGGTGTGCAGACAGCAGTAGTGTGGTCTTCCGGTGTCACACAGAG
GTGATCTACTACTTTTGGTGTACAGTCGACGTTTCGTTCTGGCCCTGTGC
CATCGCCGTTTCTGCCCGATGTGGAGGTCACCCTTATATCTAAGGGGTAA
AAACCTCCTCCCGTCTGTCGAAGACGTTTTACCCTCTTCGCATTGCAGGG
CATTGGGTTATGCCCGCGAGAGTTCGAATCTCTTCGTCGACGCCAAATAT
GAAAAGGGTCAAACGTCTTCGACTAACCCAAAGGAAGCTTTTACCCTTTA
GATATTTGGGTGACCTCCACACCGAGCTTCTTCAACTTGCGTAGTTTGAT
CGGCATTTACCTGGATTGGACCCTCTCATTCGTTGGAACCCCCACCACTC
CTCCGCTGCTCCACCCACCGACCCCCCTGCTAAACTGCGCGACCCGCTGA
AGCATGCGAGGGAAATGCTGGTGGAAGGGCGGACCGGAGAACGAGTTGGC
GTTCGCCTTGGGGGCGGTAAAGCTGGGACCGTTTAAAATCGGAAAGGACA
AGAACGAGGTCAAGACGTACAAGTTTTTCGCCAACGACGGAAAGGTGGGC
TGGGGGGCAGAGGGGAAGGAGAATGAAAACACCAATCAGTGGATAAGGCA
CCCCTGGTGCATCCATCGCCTCTTGGATAGTCGTTTCGCTCCGCCTGCTG
TGTTTCATTTCAACCAAGCCAGATAACATGCACCGAAACGTGTAGTACAT
ACACCACACCGGAACGTGTGGACAGACGCCCGAATAAATGGGACGAAAAC
ACACACACACACACACACACACACAGACGCACACAAGTCAACAGTTTGTC
ATGTTGCGCGGCACGGAGATGGTGAGCGCGAGGGCCGTGGTTCCAGCCTA
CTTGCTCCCGCGTGCAGATGTTCGATATTAAGAAGAGCGGAGTTAACGCG
AAGGGGTGTGTGTGTCCCATGCATTCGTTCCATTGACCATCGATTGGTCG
TCATTCTCCCTTCCCGCCCAGAGAAGTAGGTAGGGAGGGACTTCTTGATA
ACGGTTTTGTCTCCCCCCTCCTCCTACATAACCTATTTGCTAATCCGCTG
TTGTCTCTCCATCTTTGCCTTGGTTCGGAAACATGTGCTCCGGAAAATCC
TGCTTCCGGCGCGGCGCTCAAGATCCTTGCGGCGAAAAGCAGCTCGGGAG
GCTTCGCGCTGCTCTCGCGCGTAACTTAGCTCGAGGTCAAACTGCACTTT
GTGCACGGGCGTATTTTGACGAAGGATGGCTCTGTGCGTTGGGCGCCCCG
TGTCGTGGGAGAGTGTGTTGCCGAGCGTGTGACAGCTCTACTGCCTCGTA
CTCCGTATGTGATACACCCGTTTGGAAATGGATTGGTAGTGTGGTGAGTT
ATTTTAATCGGTATGTATGTAGTAGCTCGGGGTGTGACAACCCGACGGGC
GTGATACGTAGCCCGCTGGCGTAATAATGTGACAGCCGTGCAAACAGAAG
GTGTGTTGAACGCTCGAGAAAATAAAGTTCCATTCCTGCACTGATTTATC
ATCTCTCGCTCTGACCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig554:32507..36326-

>mRNA_L-elsbetiae_contig554.13839.1 ID=mRNA_L-elsbetiae_contig554.13839.1|Name=mRNA_L-elsbetiae_contig554.13839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig554:32507..36326- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCTCGTAAGCTTCCAACTAGGGCTGTGCCTTGGTGTTGTCTTGGC
GCCAATCTCCTCTGTCCGTGCCTTCGATGCTCCTCGTAAGCTTCCAACTA
GGGCTGTGCCTTGGTGTTGTCTTGGCGCCAATCTCCTCTGTCCGTGCCTT
CGGACCGCGGCCGTCCTCACTTGCTCTATCGGCACAACAGCGAGCGAGGT
CGCTCGCATCGACAAGGAGCCTCGACCGCCGCGACCGCGACCATGGCCGA
GGTGTTCGTGGTCTGCGGGCGGAAGCCGAAGGCGGTGCGCGGGGAGCTTC
AGAACCAGCGGAGGTGTTGAAGTCAGCGGTCGAGACTCGGAAAGGACCGC
GGCCGTCCTCACTTGCTCTATCGGCACAACAGCGAGCGAGGTCGCTCGCA
TCGACAAGGAGCCTCGACCGCCGCGACCGCGACCATGGCCGAGGTGTTCG
TGGTCTGCGGGCGGAAGCCGAAGGCGGTGCGCGGGGAGCTTCAGAACCAG
CGGAGGTGTTGAAGTCAGCGGTCGAGACTCGGAAAGTGCCGATGACGGAG
GTGTCGGAGGCGCTGAGAGTGCTGGCAGAAGACGCCGCTGCGACGCCGGC
GTTTGAAGTGCCGATGACGGAGGTGTCGGAGGCGCTGAGAGTGCTGGCAG
AAGACGCCGCTGCGACGCCGGCGTTTGAAGCGGAGGACGTGGAGGGGAGC
TGGGAGCTGGTTTTCAGCACGCAGCTCAAGAGCGGGTACATGCCGATACG
CGAGCTGGTCGGGTTCTACCCTTCCCGAGAGGAAGCTTCAATCGACGCCA
ATGCTGGACCGCTTCCAATCGGGGGCGGAGGACGTGGAGGGGAGCTGGGA
GCTGGTTTTCAGCACGCAGCTCAAGAGCGGGTACATGCCGATACGCGAGC
TGGTCGGGTTCTACCCTTCCCGAGAGGAAGCTTCAATCGACGCCAATGCT
GGACCGCTTCCAATCGGGGGCATGCGAGGGAAATGCTGGTGGAAGGGCGG
ACCGGAGAACGAGTTGGCGTTCGCCTTGGGGGCGGTAAAGCTGGGACCGT
TTAAAATCGGAAAGGACAAGAACGAGGTCAAGACGTACAAGTTTTTCGCC
AACGACGGAAAGCATGCGAGGGAAATGCTGGTGGAAGGGCGGACCGGAGA
ACGAGTTGGCGTTCGCCTTGGGGGCGGTAAAGCTGGGACCGTTTAAAATC
GGAAAGGACAAGAACGAGGTCAAGACGTACAAGTTTTTCGCCAACGACGG
AAAGATCCTTGCGGCGAAAAGCAGCTCGGGAGGCTTCGCGCTGCTCTCGC
GCGTAACTTAGATCCTTGCGGCGAAAAGCAGCTCGGGAGGCTTCGCGCTG
CTCTCGCGCGTAACTTAG
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