mRNA_L-elsbetiae_contig554.13835.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig554.13835.1
Unique NamemRNA_L-elsbetiae_contig554.13835.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig554.13835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig554contigL-elsbetiae_contig554:7387..8692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1306
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig554.13835.1prot_L-elsbetiae_contig554.13835.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig554 7968..8639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.8972042-UTR-L-elsbetiae_contig554:7386..79671622816583.8972042-UTR-L-elsbetiae_contig554:7386..7967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 7387..7967 +
1691683664.1685057-UTR-L-elsbetiae_contig554:7386..79671691683664.1685057-UTR-L-elsbetiae_contig554:7386..7967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 7387..7967 +
1622816583.9191258-UTR-L-elsbetiae_contig554:8639..86921622816583.9191258-UTR-L-elsbetiae_contig554:8639..8692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 8640..8692 +
1691683664.193449-UTR-L-elsbetiae_contig554:8639..86921691683664.193449-UTR-L-elsbetiae_contig554:8639..8692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig554 8640..8692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.9074614-CDS-L-elsbetiae_contig554:7967..86391622816583.9074614-CDS-L-elsbetiae_contig554:7967..8639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 7968..8639 +
1691683664.1792994-CDS-L-elsbetiae_contig554:7967..86391691683664.1792994-CDS-L-elsbetiae_contig554:7967..8639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig554 7968..8639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig554.13835.1

>prot_L-elsbetiae_contig554.13835.1 ID=prot_L-elsbetiae_contig554.13835.1|Name=mRNA_L-elsbetiae_contig554.13835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MAVGARGAGATCALGWKGVRNGGRMGRVPGGGRHRRGTRSGIRSARQGFH
ASRVPTGAAKEGPCEEGPHGVSRREEATWLNIQEYWRQTQNDALPVGACV
FVVHRPLFSVELGSEIGCWLFVRLLSSGELSCVLCVCFLSGRATRSHACV
PSRGRGRVRMDSPHHPPPTEDANICSDVPGGKCHFPHTSLGCRGDIYGCL
SSSHGAAVLLKSGSIDIVVGSTR*
back to top

mRNA from alignment at L-elsbetiae_contig554:7387..8692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig554.13835.1 ID=mRNA_L-elsbetiae_contig554.13835.1|Name=mRNA_L-elsbetiae_contig554.13835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1306bp|location=Sequence derived from alignment at L-elsbetiae_contig554:7387..8692+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCATGTGACGCCGACCGTGCGGGGGTCAAGGTTGTGGACACTTCCGTT
GAGATTGGCGGCATTTTCCACGGGCTTGATTGGAAGTCGATTTCGGGCAA
AGACTGCTGCTGTGGCTTCTTCGCGTTTGCCAGCTGCCTGAAACGACTGC
CCAAGCGGGCTGAAAGATGACGGGGGGGCATGTTCGCGGCACACAGGCGG
CACACATCGTTTTTTAGGTATGAGGAGGTTTGCCCGGCCCTTTACCTGAG
GCATCAAGGTGTCGGGGATGGAAAAACACTGGGATTCTCCAGTTTACTGT
CGACGTGTCTGGTGCCCTTTGGGGGCAGACGGTTATTTTGTACCCCGGAT
TCCGCTTCATCGGCTGGTTGTTGGTTGGACTTTCCCACGGAGTTATCGGG
GAAACGTTATTTGGAAGGATTGTCGATGGCGGGCTATGTTATCAAGACCT
GTCGCTCTGGCTTACCCAGGCGCGCGGCCCCGGCTCGACCTGTATGGTAG
GTACTTAGAAAGCCGACCCGCAGCGTGCGCGTGCCGGGGGGAAGGGGGGG
AGGAGGGGGGAGTAGTCAGAGATGGATATGAATGGCTGTTGGGGCGCGCG
GTGCGGGAGCAACTTGTGCGCTGGGTTGGAAGGGGGTTCGGAACGGAGGT
CGGATGGGCAGGGTACCTGGGGGCGGAAGGCATAGGCGCGGCACACGTAG
CGGGATAAGATCTGCGCGACAAGGTTTTCATGCGTCAAGGGTACCCACCG
GCGCCGCCAAAGAAGGTCCCTGTGAGGAGGGTCCCCATGGTGTTTCTAGG
AGGGAAGAGGCAACGTGGTTAAATATACAGGAATATTGGAGACAGACACA
GAACGACGCGCTTCCGGTCGGGGCTTGTGTGTTTGTGGTGCATCGTCCCC
TATTTTCTGTCGAGTTGGGTTCTGAGATTGGGTGTTGGTTGTTTGTGAGG
CTTCTGTCGTCCGGAGAGCTTTCTTGTGTTTTGTGTGTGTGTTTTCTCTC
AGGGCGCGCAACACGGTCTCATGCATGCGTGCCCTCCAGAGGCAGAGGGC
GAGTGAGGATGGATTCCCCCCACCACCCCCCACCCACTGAAGATGCAAAC
ATATGTTCTGACGTGCCGGGCGGCAAGTGCCATTTCCCGCACACGAGTCT
GGGATGTAGGGGAGATATATATGGGTGTCTTTCGTCGAGTCACGGGGCGG
CTGTCCTGCTGAAGTCGGGGTCGATCGATATAGTAGTAGGTAGCACTCGC
TGAGATGAGAATTAACAGGTTACAGGGTTTCGTCTATGGGTGGTCCTTGG
TGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig554:7387..8692+

>mRNA_L-elsbetiae_contig554.13835.1 ID=mRNA_L-elsbetiae_contig554.13835.1|Name=mRNA_L-elsbetiae_contig554.13835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig554:7387..8692+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGTTGGGGCGCGCGGTGCGGGAGCAACTTGTGCGCTGGGTTGGAA
GGGGGTTCGGAACGGAGGTCGGATGGGCAGGGTACCTGGGGGCGGAAGGC
ATAGGCGCGGCACACGTAGCGGGATAAGATCTGCGCGACAAGGTTTTCAT
GCGTCAAGGGTACCCACCGGCGCCGCCAAAGAAGGTCCCTGTGAGGAGGG
TCCCCATGGTGTTTCTAGGAGGGAAGAGGCAACGTGGTTAAATATACAGG
AATATTGGAGACAGACACAGAACGACGCGCTTCCGGTCGGGGCTTGTGTG
TTTGTGGTGCATCGTCCCCTATTTTCTGTCGAGTTGGGTTCTGAGATTGG
GTGTTGGTTGTTTGTGAGGCTTCTGTCGTCCGGAGAGCTTTCTTGTGTTT
TGTGTGTGTGTTTTCTCTCAGGGCGCGCAACACGGTCTCATGCATGCGTG
CCCTCCAGAGGCAGAGGGCGAGTGAGGATGGATTCCCCCCACCACCCCCC
ACCCACTGAAGATGCAAACATATGTTCTGACGTGCCGGGCGGCAAGTGCC
ATTTCCCGCACACGAGTCTGGGATGTAGGGGAGATATATATGGGTGTCTT
TCGTCGAGTCACGGGGCGGCTGTCCTGCTGAAGTCGGGGTCGATCGATAT
AGTAGTAGGTAGCACTCGCTGAATGGCTGTTGGGGCGCGCGGTGCGGGAG
CAACTTGTGCGCTGGGTTGGAAGGGGGTTCGGAACGGAGGTCGGATGGGC
AGGGTACCTGGGGGCGGAAGGCATAGGCGCGGCACACGTAGCGGGATAAG
ATCTGCGCGACAAGGTTTTCATGCGTCAAGGGTACCCACCGGCGCCGCCA
AAGAAGGTCCCTGTGAGGAGGGTCCCCATGGTGTTTCTAGGAGGGAAGAG
GCAACGTGGTTAAATATACAGGAATATTGGAGACAGACACAGAACGACGC
GCTTCCGGTCGGGGCTTGTGTGTTTGTGGTGCATCGTCCCCTATTTTCTG
TCGAGTTGGGTTCTGAGATTGGGTGTTGGTTGTTTGTGAGGCTTCTGTCG
TCCGGAGAGCTTTCTTGTGTTTTGTGTGTGTGTTTTCTCTCAGGGCGCGC
AACACGGTCTCATGCATGCGTGCCCTCCAGAGGCAGAGGGCGAGTGAGGA
TGGATTCCCCCCACCACCCCCCACCCACTGAAGATGCAAACATATGTTCT
GACGTGCCGGGCGGCAAGTGCCATTTCCCGCACACGAGTCTGGGATGTAG
GGGAGATATATATGGGTGTCTTTCGTCGAGTCACGGGGCGGCTGTCCTGC
TGAAGTCGGGGTCGATCGATATAGTAGTAGGTAGCACTCGCTGA
back to top