mRNA_L-elsbetiae_contig5539.13833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5539.13833.1
Unique NamemRNA_L-elsbetiae_contig5539.13833.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5539.13833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5539contigL-elsbetiae_contig5539:6666..7680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1015
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5539.13833.1prot_L-elsbetiae_contig5539.13833.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5539 6697..7437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.8494513-UTR-L-elsbetiae_contig5539:6665..66961622816583.8494513-UTR-L-elsbetiae_contig5539:6665..6696Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5539 6666..6696 +
1691683664.1383212-UTR-L-elsbetiae_contig5539:6665..66961691683664.1383212-UTR-L-elsbetiae_contig5539:6665..6696Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5539 6666..6696 +
1622816583.8694296-UTR-L-elsbetiae_contig5539:7437..76801622816583.8694296-UTR-L-elsbetiae_contig5539:7437..7680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5539 7438..7680 +
1691683664.1568427-UTR-L-elsbetiae_contig5539:7437..76801691683664.1568427-UTR-L-elsbetiae_contig5539:7437..7680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5539 7438..7680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.8596475-CDS-L-elsbetiae_contig5539:6696..74371622816583.8596475-CDS-L-elsbetiae_contig5539:6696..7437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5539 6697..7437 +
1691683664.1478477-CDS-L-elsbetiae_contig5539:6696..74371691683664.1478477-CDS-L-elsbetiae_contig5539:6696..7437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5539 6697..7437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5539.13833.1

>prot_L-elsbetiae_contig5539.13833.1 ID=prot_L-elsbetiae_contig5539.13833.1|Name=mRNA_L-elsbetiae_contig5539.13833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp
MCCVFSKRGGYRFRVLDSYLWLFEVFVCVMGSFSIARPPPLRVLCSTAYS
PERERRGRQAHTESGPCKVSTMYGADESRGSRSVNNNAHGTANPVSEICG
CARVCLHFVRAAVGVFVLYDVKFICKSGRGDVEREIYMRSGISTSPEVID
VCFLGFGPRVAEGLTFVFFLDGGVRGSFVVVLASPPFLVKITRSLRLLRS
EAHPPGTRIIAYYVLLCFSYTFSPSTSSRSHFSTWFVAKNTAGQKD*
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mRNA from alignment at L-elsbetiae_contig5539:6666..7680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5539.13833.1 ID=mRNA_L-elsbetiae_contig5539.13833.1|Name=mRNA_L-elsbetiae_contig5539.13833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig5539:6666..7680+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCGTGTCGGGTGTTGTGGTCGCGGTCGAATGTGTTGTGTATTTTCGA
AACGAGGGGGGTATCGTTTCCGTGTGTTAGATAGTTACTTGTGGCTGTTT
GAAGTTTTTGTTTGTGTCATGGGCTCTTTTTCGATCGCCCGCCCTCCTCC
CTTGCGGGTCTTGTGTAGCACAGCTTATTCGCCGGAAAGAGAGAGGAGAG
GCCGGCAAGCACACACAGAGAGTGGTCCGTGTAAGGTATCTACCATGTAT
GGTGCCGATGAAAGTCGGGGGTCCAGGAGCGTAAATAACAACGCACACGG
CACAGCCAACCCGGTCAGTGAGATCTGTGGCTGTGCGCGCGTGTGCTTGC
ACTTCGTACGTGCTGCAGTTGGAGTGTTTGTCTTGTATGATGTGAAATTT
ATTTGCAAGAGTGGGAGGGGTGACGTAGAGAGAGAAATATATATGCGGAG
TGGTATTTCGACCTCGCCCGAAGTGATTGATGTCTGTTTTTTGGGGTTCG
GTCCTCGCGTCGCTGAGGGTCTCACGTTCGTTTTTTTTTTGGACGGGGGG
GTGCGGGGGAGCTTTGTTGTTGTTCTCGCCTCCCCCCCCTTCCTGGTGAA
AATAACGCGCTCGCTTCGCCTTTTGCGATCCGAAGCTCACCCCCCCGGCA
CACGTATCATAGCGTACTACGTTCTACTTTGTTTTTCCTACACTTTCTCG
CCCTCCACGAGCTCTCGCTCCCATTTTTCCACGTGGTTTGTCGCTAAAAA
CACAGCAGGGCAAAAAGACTAGAACGGGGAGGGAGCGTTGTTTTTTTTAC
TTGTTTGGTTTGGTTTTGGTTCGGTGTTGTGTTTTGTCGTCGTCGTCTGT
TCTGTGCTGTCTTTCTGTCTGTCATCTTTCGCTGCCCCGGCTCTGCCCTG
CTTGCCTTGCTTCGCTTGCGGCAGCAAGTCATGATTACCGGCTTGCCGGC
GGCGGCGTTGTGTGTACTATATTGTGGGAGAGAGCTTGTGCGATTGCTCC
CTCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5539:6666..7680+

>mRNA_L-elsbetiae_contig5539.13833.1 ID=mRNA_L-elsbetiae_contig5539.13833.1|Name=mRNA_L-elsbetiae_contig5539.13833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig5539:6666..7680+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTGTGTATTTTCGAAACGAGGGGGGTATCGTTTCCGTGTGTTAGA
TAGTTACTTGTGGCTGTTTGAAGTTTTTGTTTGTGTCATGGGCTCTTTTT
CGATCGCCCGCCCTCCTCCCTTGCGGGTCTTGTGTAGCACAGCTTATTCG
CCGGAAAGAGAGAGGAGAGGCCGGCAAGCACACACAGAGAGTGGTCCGTG
TAAGGTATCTACCATGTATGGTGCCGATGAAAGTCGGGGGTCCAGGAGCG
TAAATAACAACGCACACGGCACAGCCAACCCGGTCAGTGAGATCTGTGGC
TGTGCGCGCGTGTGCTTGCACTTCGTACGTGCTGCAGTTGGAGTGTTTGT
CTTGTATGATGTGAAATTTATTTGCAAGAGTGGGAGGGGTGACGTAGAGA
GAGAAATATATATGCGGAGTGGTATTTCGACCTCGCCCGAAGTGATTGAT
GTCTGTTTTTTGGGGTTCGGTCCTCGCGTCGCTGAGGGTCTCACGTTCGT
TTTTTTTTTGGACGGGGGGGTGCGGGGGAGCTTTGTTGTTGTTCTCGCCT
CCCCCCCCTTCCTGGTGAAAATAACGCGCTCGCTTCGCCTTTTGCGATCC
GAAGCTCACCCCCCCGGCACACGTATCATAGCGTACTACGTTCTACTTTG
TTTTTCCTACACTTTCTCGCCCTCCACGAGCTCTCGCTCCCATTTTTCCA
CGTGGTTTGTCGCTAAAAACACAGCAGGGCAAAAAGACTAGATGTGTTGT
GTATTTTCGAAACGAGGGGGGTATCGTTTCCGTGTGTTAGATAGTTACTT
GTGGCTGTTTGAAGTTTTTGTTTGTGTCATGGGCTCTTTTTCGATCGCCC
GCCCTCCTCCCTTGCGGGTCTTGTGTAGCACAGCTTATTCGCCGGAAAGA
GAGAGGAGAGGCCGGCAAGCACACACAGAGAGTGGTCCGTGTAAGGTATC
TACCATGTATGGTGCCGATGAAAGTCGGGGGTCCAGGAGCGTAAATAACA
ACGCACACGGCACAGCCAACCCGGTCAGTGAGATCTGTGGCTGTGCGCGC
GTGTGCTTGCACTTCGTACGTGCTGCAGTTGGAGTGTTTGTCTTGTATGA
TGTGAAATTTATTTGCAAGAGTGGGAGGGGTGACGTAGAGAGAGAAATAT
ATATGCGGAGTGGTATTTCGACCTCGCCCGAAGTGATTGATGTCTGTTTT
TTGGGGTTCGGTCCTCGCGTCGCTGAGGGTCTCACGTTCGTTTTTTTTTT
GGACGGGGGGGTGCGGGGGAGCTTTGTTGTTGTTCTCGCCTCCCCCCCCT
TCCTGGTGAAAATAACGCGCTCGCTTCGCCTTTTGCGATCCGAAGCTCAC
CCCCCCGGCACACGTATCATAGCGTACTACGTTCTACTTTGTTTTTCCTA
CACTTTCTCGCCCTCCACGAGCTCTCGCTCCCATTTTTCCACGTGGTTTG
TCGCTAAAAACACAGCAGGGCAAAAAGACTAG
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