mRNA_L-elsbetiae_contig5537.13830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5537.13830.1
Unique NamemRNA_L-elsbetiae_contig5537.13830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.490e-66
Identity = 132/239 (55.23%), Postives = 162/239 (67.78%), Query Frame = 1 
Query:  475 PGQQQCRCTPRLTFWIAAGISWLVWIFAVAAGADDKWMRDESSGEGFLAAAEDGRLNFCDGLDDNEEV----------FEDSCAIYRAFTAMQIIATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIAVVLGGTFKQELNSIADE------VGAPGI----------KLGPTFGVAVTGLILAVVVSVLLLLFARHTGDGPLHECCHSLMLANMTEDNGSPA 1113
            PG Q   CTPRLTFW+ A  SWLVWIFAV+A ADDKW++D   G+ +LAA ED  LN CDGLDD  +           F   C +YRAFTAMQ++ATI CSVSV+LL+LAFFRP  G   C+S R+LAFVGGALMATYALFQL+AVVL     QE +++ ++       G  G           ++GPTFGV VT LILAV+++V+L L A  TGDGPL++CCHSLMLAN +  NG P+
Sbjct:   14 PGFQ---CTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGD-WLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGK--CASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKS--NGIPS 244
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BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.380e-38
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 1 
Query:  496 CTPRLTFWIAAGISWLVWIFAVAAGADDKWMRDESSGEGF-LAAAEDGRLNFCDGLDDNEEVFEDSCAIYRAFTAMQIIATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIAVVLGGTFKQELNSIADE-VGAPGIKLGPTFGVAVTGLILAVVVSVLLLLFARHTGDGPLHECCHSLMLAN 1086
            CTPRLTFWI+  + W++W+FAVAA ADDKW + +    GF + A ++  L+ CD  D       D C++Y+AFTAMQ IA +  SVS+VL +LA FRP+ G+  C S +SLA   G+LM  +A F+++A VL    ++EL+   +   G     LG TFG+AV  ++L VV +V +L FAR +GDGP  +C +  M  N
Sbjct:   72 CTPRLTFWISCALGWVIWVFAVAASADDKWAKID----GFDIGAGDEDILDDCDSSD-------DVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLK-CCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMN 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE6.490e-6655.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE1.380e-3844.22WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5537contigL-elsbetiae_contig5537:8214..12381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009190.1
Exons4
Model size1950
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5537.13830.1prot_L-elsbetiae_contig5537.13830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5537 8841..11952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.584345-UTR-L-elsbetiae_contig5537:8213..88401622816583.584345-UTR-L-elsbetiae_contig5537:8213..8840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5537 8214..8840 -
1691683663.9578364-UTR-L-elsbetiae_contig5537:8213..88401691683663.9578364-UTR-L-elsbetiae_contig5537:8213..8840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5537 8214..8840 -
1622816583.6535432-UTR-L-elsbetiae_contig5537:11952..123811622816583.6535432-UTR-L-elsbetiae_contig5537:11952..12381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5537 11953..12381 -
1691683664.0198271-UTR-L-elsbetiae_contig5537:11952..123811691683664.0198271-UTR-L-elsbetiae_contig5537:11952..12381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5537 11953..12381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.5971196-CDS-L-elsbetiae_contig5537:8840..92411622816583.5971196-CDS-L-elsbetiae_contig5537:8840..9241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 8841..9241 -
1691683663.967398-CDS-L-elsbetiae_contig5537:8840..92411691683663.967398-CDS-L-elsbetiae_contig5537:8840..9241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 8841..9241 -
1622816583.6106434-CDS-L-elsbetiae_contig5537:9988..102101622816583.6106434-CDS-L-elsbetiae_contig5537:9988..10210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 9989..10210 -
1691683663.9776225-CDS-L-elsbetiae_contig5537:9988..102101691683663.9776225-CDS-L-elsbetiae_contig5537:9988..10210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 9989..10210 -
1622816583.623054-CDS-L-elsbetiae_contig5537:11179..113211622816583.623054-CDS-L-elsbetiae_contig5537:11179..11321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 11180..11321 -
1691683663.9966443-CDS-L-elsbetiae_contig5537:11179..113211691683663.9966443-CDS-L-elsbetiae_contig5537:11179..11321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 11180..11321 -
1622816583.6407094-CDS-L-elsbetiae_contig5537:11823..119521622816583.6407094-CDS-L-elsbetiae_contig5537:11823..11952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 11824..11952 -
1691683664.0104847-CDS-L-elsbetiae_contig5537:11823..119521691683664.0104847-CDS-L-elsbetiae_contig5537:11823..11952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5537 11824..11952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5537.13830.1

>prot_L-elsbetiae_contig5537.13830.1 ID=prot_L-elsbetiae_contig5537.13830.1|Name=mRNA_L-elsbetiae_contig5537.13830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MISSAALKQQQQRQQPGQQQCRCTPRLTFWIAAGISWLVWIFAVAAGADD
KWMRDESSGEGFLAAAEDGRLNFCDGLDDNEEVFEDSCAIYRAFTAMQII
ATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIA
VVLGGTFKQELNSIADEVGAPGIKLGPTFGVAVTGLILAVVVSVLLLLFA
RHTGDGPLHECCHSLMLANMTEDNGSPAILAGPPPGSKPKPGPAAAATAA
AAPHHYEEEGAVPLPQAATAIATEITASEQQQSMSPPPYDQLPPAVG*
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mRNA from alignment at L-elsbetiae_contig5537:8214..12381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5537.13830.1 ID=mRNA_L-elsbetiae_contig5537.13830.1|Name=mRNA_L-elsbetiae_contig5537.13830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4168bp|location=Sequence derived from alignment at L-elsbetiae_contig5537:8214..12381- (Laminarionema elsbetiae ELsaHSoW15)
ATAGATGCATGTCCTCTCTCCCGAATCCCTCCCTTCTTTCTCCTCGCATC
TTGCCTCGCGCCCACACTCTCCCTGTCGGTTTTCTGTCTTTACAGCACAG
CAGCATCAGTAAGCATTATTTCCAAAAAAAGACAGGGCATTTTAGACGAG
GCTGGGCTACCCCAGGCGATTTATTAAATATTGTGGACATTCCTGACATT
ATCTGGGTAGCCAGAAGTTAAGAATTGTCCCCCTCAGCACCCCCGAAAAA
TACTCAAACAAGGCCTCTCTACATACAATACCCATCAATCCCTCCTCGCC
CGAAACTATGCCACCCCCCGCGTCCCTTATTGTGCGTGATCTATCGGATT
TCAAGTCAGGTTTGCCTTGGGTACTCTCGCTCTAGGGCAGAGGGGCCGAG
CGAGGACAGGGGGGAGGAGAAGCGGAAATATGATTTCTTCGGCAGCGCTG
AAGCAGCAGCAGCAGCGGCAACAGCCGGGCCAACAGCAGTGTCGGTGCAC
CCCACGCCTGACTTTTTGGATTGCCGCCGGGATATCCTGGCTGGTCTGGA
TATTCGCGGTAAAGGGTTGGATCTTTAGTTTAGCTTTTTCTTCATATTTC
CCGCTGTTTTCGCTTGAATTATCTGTTGCCTTCGTGATGTGAATACATGT
CCGGGGGTAGATAAGAATGCACATTTTATGGATTATCTAGGCACACGCGA
CAACATGCGTCGAAACGATGTGGTGTTGTTCGGCCCGGTCTGTTTTCTAG
CAGTTGCGCGCGCTGCTCCGAATCTGGAGGTAACAGGCCACGCGACAGCA
GTACGCGTATTGCAGGATTTCAAGAAGTATATGCCTATGCAAAAAGAGCG
GGTGTCGTATCGCCTGAGCACAACAGAACCGTAGTGATTGCGTGCATCTC
GGGGTCTCGTATGTATGGTAGCAGTGATGCGGACAAGGAGGGAGGCTTCG
GTGTCTCTGTCCCCAAGAGGAGCCAGGTGTTGCGTTTTTCTTCCTCACAC
AGCGAGAACCCCAATCCTGTGTAATCCCCAAACACGTGGCCTAACGCGGT
AACTTCTCAGGTCGCTGCCGGCGCGGATGATAAGTGGATGCGTGACGAAA
GTAGTGGTGAGGGATTCCTCGCGGCGGCAGAAGATGGGCGACTGAATTTC
TGCGACGGTCTCGATGATAACGAGGAAGTGTTTGAAGACTCCTGCGCCAT
CTGTGAGAAAACGTGGAATTCTTACAAACAAAATCGCAAATCTTTGCAGG
GGAGATGTCCAACTCTTCTGATATTTTAGGTTTGTTTTTCTGCTCGCTTC
GCCAAATATTACGTCACTGTATGGAATACCGTTTGAATCCCATATCGAGT
CCTTGCTCTAGTGTGGGTTAGGTTCCATCGTTGATTCATTGTTTATTTTT
AAAAGTGTGCATCCCGTTTTATGACTTGACACCTTTTTGCGGCCCATGCT
CGCCTCGGTTTCAGATATGCTGTTTGTACAGTCTTCCCTTCTCCTCCATC
TGTCCACTTGCATCTTTCTCTCCATGGCATCCATCCGCTTCCAGTCAAGT
TCTACCGAAAAGTACTCTCTTGTTCTAAGGCAAATATAGTCAGTGACGTC
ATGCTCCCGCTCAGGTCCGCGCACTCTCTCCTTGCTACGCACAAACACAC
ACACACACACAGTTTCGTGAATCGTCATTTTCCACGACTTTTCCCCGTTT
TGTGCGAGGTGCCGTGGTCGTAGAATGTCAACCACGAGCCTCGTGAGCCT
CGTGAGTCTCGTTTACACTCTATGATACATGCTCAATAAAATCCCTTTAG
CAGAAATGATAATTAGCATCCGTCTACCCGTGATGGTAGTGGTTCATGTT
CCACCTCCTGCCCGCCTCCCGCACGGTCATGCGATCGCGCACGTTCCGCC
ATTTGTAGAGACGTGTTATTGTACCAAGAGTCTACGTGTGGTGTGCCCAC
GATAAGACAGACGCTTTTCTGTGCTAACCCGAAATGGGTCAGCAGAACGA
TAGCATTGCGTTATTAGGCGACGCATCCGGTATCGTGGATGGAGGACTTT
TCGTGCGGCGCGGCAAAGCGGCTTGGCCTTGTCTGTGACATCGGTAGCAG
GCTTGTGTGTCGCTGCTCGCTCGCTCGCCCGCTCTTATTCTCCCTCTCTC
TCTCCCTGTCGCTTGCGGCAGACCGGGCCTTCACAGCAATGCAGATCATC
GCCACGATAGCGTGTTCGGTATCCGTGGTGCTGCTATCGCTCGCCTTCTT
CCGGCCCTCGGTGGGGGTCGGAGGGTGTTCCTCTCCTCGGAGCCTGGCGT
TCGTTGGGGGTGCACTCATGGCCACGTACGCCCTATTTCAGCTGATAGCG
GTGGTGCTGGGTGGGACCTTCAAGCAGGAGCTCAATAGCATAGGTGGGTT
GATTGAGTTGAGTGTACGCGGGCGACTGTATCCGTGTAAAGGCGTATGTA
ACCCTAAATCCAGGAAGGTCGAGTGTATTTAGGACAATGGGAGAAACGCT
TTACGCATGGCGATGTTGAATCGCAAGTTGCATTCAACTTTGTGTGGGTC
AGACACGGAAGGTTCCGAGACAAGAGCCGCGGACTGGACTCACGAAGCAA
ATGCTGGTGACAGATAACCCCGACCAATAACAAACAAAGAGGGGGTTCTC
GCCAGGCGTCTGTTCATTTGCTGCTACCACTCTGTACTCTAATGTTTAGC
TCTGCCGTGCTCCTGCATGCGTGCGGCAAACTCTAAGGTTTGCGCATCCT
TGGGTTGTAGGCTGTTGCCCCCCGACCGCGGAAGATCCCGGAGTGCTGTG
TAGGTCATTACCGTGAGCACCAATGTACTGTGTAGATGCAGCCCGAGCGC
TACAATACCCATTCTGGAGACAGACCGTTGGCCCGTGTGCTCCTGCGATT
GGATTTATGCACATAGAAATGCCTCAACACCCGAAAGGTACGTAGGTAGG
TAGTGTGGTACTCAGATGCGGAAGGCTGAATAGGACGGTGATTTGTTCTG
CAGAGATTCTTGGCGCTCAGGCTACTTTTTTAGCGCGGCGTCTTGGGAGA
AGACCCTCACCCCCGCACCCCCTGCCCGTCCTCGATACAACTCCACCCGG
TGTCGTCTCTTCTTCCTTGTGTGCACATCTTGTCGTTCAGCGGATGAAGT
TGGCGCCCCCGGGATCAAGCTGGGACCTACTTTCGGTGTCGCGGTCACAG
GCTTGATCCTTGCTGTCGTGGTTTCCGTACTCCTCCTGCTGTTTGCGCGG
CATACGGGGGACGGTCCCTTGCACGAGTGCTGCCACAGCCTCATGCTTGC
AAATATGACCGAGGACAACGGCAGTCCCGCGATTTTGGCCGGGCCGCCGC
CGGGGTCGAAGCCTAAGCCTGGGCCTGCGGCTGCTGCTACTGCCGCTGCT
GCGCCGCATCACTATGAAGAAGAGGGGGCTGTGCCGCTACCTCAGGCAGC
CACAGCCATAGCCACCGAGATAACAGCAAGCGAGCAGCAGCAGAGCATGT
CGCCCCCGCCGTATGACCAGTTGCCACCGGCAGTCGGTTGATTTTAGCTG
TTTCGAGAACACTCTTAGCCCGTGTGTTGGCGGTGCTTGAGGAACAGTGG
TTCGTGTACCTATATTTTTGCCGCCAAAAGCTGCAACGGACAACGTTCAA
TGGTGTGCTTCATTTCGTGTTTCATTAGATAGACGAGCGCTTCTTCTGCG
TATCTTGGCCCGGGGGGGCTGCTTGCACGTTCAGTTTGGACTGGATCGTC
TGGAGGCTACTTTCTGATGGGTTTATTTTCGGTGGGCGTTGGACAGGGAC
TTCGTTGAATGTACAGTTCGCCGGACTGGCCTCATGACTTTAAATCACGG
CTGATATACGGTTGTTATTAAGCGTACTATATGTACGTTATTTTAGTGTG
TTGGGGTTTTGAGTCCCTTCAATGTTTTTGTAAATAACTTCTGCATCCAG
GTGTTTTTTTCCCCATCTATTTGACATGCCAATATCTATAGGACAATGCT
TTTCGTACACACTTGTTTTGAGGGGGCTCCTGCCGTGATGTAAAATATAG
TTTTGCGAATATGTAGTAGTGTTGGAGGGCGCACACAAAATCAAATCGAC
ATATTCCGACTTGGGATCAACGTACGAAGATATCTAGACTAGACGAACAC
CCGGTGTGATTACCTAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5537:8214..12381-

>mRNA_L-elsbetiae_contig5537.13830.1 ID=mRNA_L-elsbetiae_contig5537.13830.1|Name=mRNA_L-elsbetiae_contig5537.13830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig5537:8214..12381- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCTTCGGCAGCGCTGAAGCAGCAGCAGCAGCGGCAACAGCCGGG
CCAACAGCAGTGTCGGTGCACCCCACGCCTGACTTTTTGGATTGCCGCCG
GGATATCCTGGCTGGTCTGGATATTCGCGATGATTTCTTCGGCAGCGCTG
AAGCAGCAGCAGCAGCGGCAACAGCCGGGCCAACAGCAGTGTCGGTGCAC
CCCACGCCTGACTTTTTGGATTGCCGCCGGGATATCCTGGCTGGTCTGGA
TATTCGCGGTCGCTGCCGGCGCGGATGATAAGTGGATGCGTGACGAAAGT
AGTGGTGAGGGATTCCTCGCGGCGGCAGAAGATGGGCGACTGAATTTCTG
CGACGGTCTCGATGATAACGAGGAAGTGTTTGAAGACTCCTGCGCCATCT
GTCGCTGCCGGCGCGGATGATAAGTGGATGCGTGACGAAAGTAGTGGTGA
GGGATTCCTCGCGGCGGCAGAAGATGGGCGACTGAATTTCTGCGACGGTC
TCGATGATAACGAGGAAGTGTTTGAAGACTCCTGCGCCATCTACCGGGCC
TTCACAGCAATGCAGATCATCGCCACGATAGCGTGTTCGGTATCCGTGGT
GCTGCTATCGCTCGCCTTCTTCCGGCCCTCGGTGGGGGTCGGAGGGTGTT
CCTCTCCTCGGAGCCTGGCGTTCGTTGGGGGTGCACTCATGGCCACGTAC
GCCCTATTTCAGCTGATAGCGGTGGTGCTGGGTGGGACCTTCAAGCAGGA
GCTCAATAGCATAGACCGGGCCTTCACAGCAATGCAGATCATCGCCACGA
TAGCGTGTTCGGTATCCGTGGTGCTGCTATCGCTCGCCTTCTTCCGGCCC
TCGGTGGGGGTCGGAGGGTGTTCCTCTCCTCGGAGCCTGGCGTTCGTTGG
GGGTGCACTCATGGCCACGTACGCCCTATTTCAGCTGATAGCGGTGGTGC
TGGGTGGGACCTTCAAGCAGGAGCTCAATAGCATAGCGGATGAAGTTGGC
GCCCCCGGGATCAAGCTGGGACCTACTTTCGGTGTCGCGGTCACAGGCTT
GATCCTTGCTGTCGTGGTTTCCGTACTCCTCCTGCTGTTTGCGCGGCATA
CGGGGGACGGTCCCTTGCACGAGTGCTGCCACAGCCTCATGCTTGCAAAT
ATGACCGAGGACAACGGCAGTCCCGCGATTTTGGCCGGGCCGCCGCCGGG
GTCGAAGCCTAAGCCTGGGCCTGCGGCTGCTGCTACTGCCGCTGCTGCGC
CGCATCACTATGAAGAAGAGGGGGCTGTGCCGCTACCTCAGGCAGCCACA
GCCATAGCCACCGAGATAACAGCAAGCGAGCAGCAGCAGAGCATGTCGCC
CCCGCCGTATGACCAGTTGCCACCGGCAGTCGGTTGACGGATGAAGTTGG
CGCCCCCGGGATCAAGCTGGGACCTACTTTCGGTGTCGCGGTCACAGGCT
TGATCCTTGCTGTCGTGGTTTCCGTACTCCTCCTGCTGTTTGCGCGGCAT
ACGGGGGACGGTCCCTTGCACGAGTGCTGCCACAGCCTCATGCTTGCAAA
TATGACCGAGGACAACGGCAGTCCCGCGATTTTGGCCGGGCCGCCGCCGG
GGTCGAAGCCTAAGCCTGGGCCTGCGGCTGCTGCTACTGCCGCTGCTGCG
CCGCATCACTATGAAGAAGAGGGGGCTGTGCCGCTACCTCAGGCAGCCAC
AGCCATAGCCACCGAGATAACAGCAAGCGAGCAGCAGCAGAGCATGTCGC
CCCCGCCGTATGACCAGTTGCCACCGGCAGTCGGTTGA
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