mRNA_L-elsbetiae_contig5533.13825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5533.13825.1
Unique NamemRNA_L-elsbetiae_contig5533.13825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5533.13825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5533contigL-elsbetiae_contig5533:9958..10510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5533.13825.1prot_L-elsbetiae_contig5533.13825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5533 10010..10379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.0343566-UTR-L-elsbetiae_contig5533:9957..100091622816583.0343566-UTR-L-elsbetiae_contig5533:9957..10009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5533 9958..10009 +
1691683663.5349112-UTR-L-elsbetiae_contig5533:9957..100091691683663.5349112-UTR-L-elsbetiae_contig5533:9957..10009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5533 9958..10009 +
1622816583.0760992-UTR-L-elsbetiae_contig5533:10379..105101622816583.0760992-UTR-L-elsbetiae_contig5533:10379..10510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5533 10380..10510 +
1691683663.5695133-UTR-L-elsbetiae_contig5533:10379..105101691683663.5695133-UTR-L-elsbetiae_contig5533:10379..10510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5533 10380..10510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.047459-CDS-L-elsbetiae_contig5533:10009..101031622816583.047459-CDS-L-elsbetiae_contig5533:10009..10103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5533 10010..10103 +
1691683663.5479252-CDS-L-elsbetiae_contig5533:10009..101031691683663.5479252-CDS-L-elsbetiae_contig5533:10009..10103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5533 10010..10103 +
1622816583.064719-CDS-L-elsbetiae_contig5533:10278..103791622816583.064719-CDS-L-elsbetiae_contig5533:10278..10379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5533 10279..10379 +
1691683663.55883-CDS-L-elsbetiae_contig5533:10278..103791691683663.55883-CDS-L-elsbetiae_contig5533:10278..10379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5533 10279..10379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5533.13825.1

>prot_L-elsbetiae_contig5533.13825.1 ID=prot_L-elsbetiae_contig5533.13825.1|Name=mRNA_L-elsbetiae_contig5533.13825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MIDDPRHGPPALLAYFDSRDEGNSIPKGSNQGRAFRGGERSYFRGKIRWR
THFLRCHCRGRSSC*
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mRNA from alignment at L-elsbetiae_contig5533:9958..10510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5533.13825.1 ID=mRNA_L-elsbetiae_contig5533.13825.1|Name=mRNA_L-elsbetiae_contig5533.13825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=553bp|location=Sequence derived from alignment at L-elsbetiae_contig5533:9958..10510+ (Laminarionema elsbetiae ELsaHSoW15)
GGACTATGTACTTCGAACTGACGACTCGTGGGGCAAGCGTCCGCTTGCTT
GCATGATTGATGACCCGCGACACGGTCCGCCTGCTCTTCTCGCCTACTTC
GACTCAAGGGACGAAGGCAATTCAATCCCTAAAGGGTCAAATCAAGGTGA
GAGTGTAAAGAAGGCTGCAGCCGAAATCCCCAACCCCTATAAAAAGTATA
TAATTAAGCATCCCAACATTAGAATGGCCACCTTAACTAATTCTCACGAT
TATGACCCCGACACTTATTCCTGTCCGATGCCGCCGATTCTGCTTCTCCA
TCAAAATATTCCTTTGTTCAGGCCGAGCCTTCCGCGGCGGCGAGCGGAGT
TATTTCCGGGGAAAAATAAGGTGGCGGACACACTTTCTTCGCTGCCACTG
CCGGGGCCGCTCCAGCTGCTGAAATCTCGGCGATGCCACTGCTTGGATTG
TGAAGAAGCCAGTGGCGGTCAAAACTAACAGAACTACTGTAATATCTTTC
CCTAACGAGCAAGGGGACCTTGCGCACGAGACCCTCTTTGCCCATCTCTC
AAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5533:9958..10510+

>mRNA_L-elsbetiae_contig5533.13825.1 ID=mRNA_L-elsbetiae_contig5533.13825.1|Name=mRNA_L-elsbetiae_contig5533.13825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig5533:9958..10510+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGATGACCCGCGACACGGTCCGCCTGCTCTTCTCGCCTACTTCGA
CTCAAGGGACGAAGGCAATTCAATCCCTAAAGGGTCAAATCAAGATGATT
GATGACCCGCGACACGGTCCGCCTGCTCTTCTCGCCTACTTCGACTCAAG
GGACGAAGGCAATTCAATCCCTAAAGGGTCAAATCAAGGCCGAGCCTTCC
GCGGCGGCGAGCGGAGTTATTTCCGGGGAAAAATAAGGTGGCGGACACAC
TTTCTTCGCTGCCACTGCCGGGGCCGCTCCAGCTGCTGAGCCGAGCCTTC
CGCGGCGGCGAGCGGAGTTATTTCCGGGGAAAAATAAGGTGGCGGACACA
CTTTCTTCGCTGCCACTGCCGGGGCCGCTCCAGCTGCTGA
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