mRNA_L-elsbetiae_contig5529.13817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5529.13817.1
Unique NamemRNA_L-elsbetiae_contig5529.13817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5529.13817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5529contigL-elsbetiae_contig5529:9035..10406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size866
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5529.13817.1prot_L-elsbetiae_contig5529.13817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5529 9307..10322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.3605304-UTR-L-elsbetiae_contig5529:9034..93061622816582.3605304-UTR-L-elsbetiae_contig5529:9034..9306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5529 9035..9306 +
1691683663.0389173-UTR-L-elsbetiae_contig5529:9034..93061691683663.0389173-UTR-L-elsbetiae_contig5529:9034..9306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5529 9035..9306 +
1622816582.3969328-UTR-L-elsbetiae_contig5529:10322..104061622816582.3969328-UTR-L-elsbetiae_contig5529:10322..10406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5529 10323..10406 +
1691683663.0719738-UTR-L-elsbetiae_contig5529:10322..104061691683663.0719738-UTR-L-elsbetiae_contig5529:10322..10406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5529 10323..10406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.3734329-CDS-L-elsbetiae_contig5529:9306..97521622816582.3734329-CDS-L-elsbetiae_contig5529:9306..9752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5529 9307..9752 +
1691683663.0500157-CDS-L-elsbetiae_contig5529:9306..97521691683663.0500157-CDS-L-elsbetiae_contig5529:9306..9752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5529 9307..9752 +
1622816582.386331-CDS-L-elsbetiae_contig5529:10258..103221622816582.386331-CDS-L-elsbetiae_contig5529:10258..10322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5529 10259..10322 +
1691683663.0619423-CDS-L-elsbetiae_contig5529:10258..103221691683663.0619423-CDS-L-elsbetiae_contig5529:10258..10322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5529 10259..10322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5529.13817.1

>prot_L-elsbetiae_contig5529.13817.1 ID=prot_L-elsbetiae_contig5529.13817.1|Name=mRNA_L-elsbetiae_contig5529.13817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MAEASVSGSGAVQPGSDDDVMCMTEVLKSPAAEDAVSSTPSQETTAAIAA
FAPPAGHQRVVVRGSKINCSALFSWGVITEKIPVGDEIKRRKDGHPNKRF
FHCFASDKCRKSEKKLAMTSKVSSGGTNHLNQYHGLAAASKPARAAKQRE
PVGCQESRPRVQVQPGEVV*
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mRNA from alignment at L-elsbetiae_contig5529:9035..10406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5529.13817.1 ID=mRNA_L-elsbetiae_contig5529.13817.1|Name=mRNA_L-elsbetiae_contig5529.13817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1372bp|location=Sequence derived from alignment at L-elsbetiae_contig5529:9035..10406+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGAATAGTAAACTTGACAGCATGGCAGCATGGCGGAAAAAGAACAG
CAAAACTCTTCAGCTCGAACCGTTCGACCTCATATTACCGGTAATGTCAC
TGCGTTAATTGTTCTGGATCGCAGCGGAGGAACTCTTCAGCTCGAACTGT
TGACTTCATTGCGTTAACTGTTCTTATTAATTGTTCTGTATCAGCATCCC
TGACAATATCACACATATTGTCGATATGAGACTACCGCCACGTAGCACAT
ACCCACACACCACACGGTAACGATGGCGGAGGCTTCTGTATCGGGCAGCG
GGGCAGTGCAGCCAGGCAGCGACGACGACGTCATGTGTATGACCGAAGTC
CTTAAATCTCCGGCTGCAGAGGATGCGGTTTCTTCAACCCCGAGCCAGGA
AACCACGGCCGCGATTGCAGCTTTCGCACCGCCTGCTGGCCACCAGCGGG
TCGTGGTCCGGGGGTCGAAGATAAATTGTTCAGCCTTGTTCTCCTGGGGT
GTCATCACCGAGAAAATCCCCGTCGGTGACGAGATCAAAAGGCGGAAAGA
CGGTCACCCGAACAAACGCTTTTTCCATTGTTTTGCGTCGGATAAATGCC
GCAAATCGGAGAAAAAACTCGCCATGACTTCGAAGGTCTCGAGTGGCGGC
ACCAATCACCTCAACCAATACCACGGCTTGGCAGCAGCCTCGAAGCCTGC
CAGGGCGGCAAAACAGAGGTACGCAGTGAGAAGCATGTGTTGTTATGAGA
CTTTGCGCTCTCTTTTTTGTTTGTTTGTGCACAGCAGCGTGAATTCAGTA
TTGGCTTGCTACAAAGCAGTTCAACAATAGATAATACATACCTCTTCGAA
GTATCTCGTGTTGAAGCATGGCGGTATATTGAATACGCCATATTGCTCAA
TGCAATGGTATTGCACGAAACAATATGTTGCCCGAGACAAAAGCTGTTCC
ACGAAACAACATGTGTTGTCCGAGACATACATTGGTATGTATACATCATA
TCGTAATATATAGAACCTCACTTCGCTCGAGTAACCATACATATGTGTAT
GCTTGTACATACATCAACACATACATGGCAAAGCATCCACGTGTTTCGTC
GTCGTGGAGGCCTGCGGTAAACGAGTAAAGTATTGAACACCCCGTTAAAT
TTGGAAGTACACGATTGGTTGTTTTTCAACGCGGTGTTCCCTGGCTTGAC
CGATGTGCAACGCGGAAACCGCAGAGAACCGGTTGGCTGCCAAGAAAGTC
GACCCCGAGTTCAAGTACAACCAGGAGAGGTGGTTTGAGATCAACTACGT
CAAGACCCACATAATTCTCGGTATGCTGCCGTTCAGCTTCATGGACAACC
CAGAGCGCCGTGAGTACATGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5529:9035..10406+

>mRNA_L-elsbetiae_contig5529.13817.1 ID=mRNA_L-elsbetiae_contig5529.13817.1|Name=mRNA_L-elsbetiae_contig5529.13817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig5529:9035..10406+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGCTTCTGTATCGGGCAGCGGGGCAGTGCAGCCAGGCAGCGA
CGACGACGTCATGTGTATGACCGAAGTCCTTAAATCTCCGGCTGCAGAGG
ATGCGGTTTCTTCAACCCCGAGCCAGGAAACCACGGCCGCGATTGCAGCT
TTCGCACCGCCTGCTGGCCACCAGCGGGTCGTGGTCCGGGGGTCGAAGAT
AAATTGTTCAGCCTTGTTCTCCTGGGGTGTCATCACCGAGAAAATCCCCG
TCGGTGACGAGATCAAAAGGCGGAAAGACGGTCACCCGAACAAACGCTTT
TTCCATTGTTTTGCGTCGGATAAATGCCGCAAATCGGAGAAAAAACTCGC
CATGACTTCGAAGGTCTCGAGTGGCGGCACCAATCACCTCAACCAATACC
ACGGCTTGGCAGCAGCCTCGAAGCCTGCCAGGGCGGCAAAACAGAGATGG
CGGAGGCTTCTGTATCGGGCAGCGGGGCAGTGCAGCCAGGCAGCGACGAC
GACGTCATGTGTATGACCGAAGTCCTTAAATCTCCGGCTGCAGAGGATGC
GGTTTCTTCAACCCCGAGCCAGGAAACCACGGCCGCGATTGCAGCTTTCG
CACCGCCTGCTGGCCACCAGCGGGTCGTGGTCCGGGGGTCGAAGATAAAT
TGTTCAGCCTTGTTCTCCTGGGGTGTCATCACCGAGAAAATCCCCGTCGG
TGACGAGATCAAAAGGCGGAAAGACGGTCACCCGAACAAACGCTTTTTCC
ATTGTTTTGCGTCGGATAAATGCCGCAAATCGGAGAAAAAACTCGCCATG
ACTTCGAAGGTCTCGAGTGGCGGCACCAATCACCTCAACCAATACCACGG
CTTGGCAGCAGCCTCGAAGCCTGCCAGGGCGGCAAAACAGAGAGAACCGG
TTGGCTGCCAAGAAAGTCGACCCCGAGTTCAAGTACAACCAGGAGAGGTG
GTTTGAAGAACCGGTTGGCTGCCAAGAAAGTCGACCCCGAGTTCAAGTAC
AACCAGGAGAGGTGGTTTGA
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