mRNA_L-elsbetiae_contig5526.13814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5526.13814.1
Unique NamemRNA_L-elsbetiae_contig5526.13814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.350e-31
Identity = 94/239 (39.33%), Postives = 133/239 (55.65%), Query Frame = 1 
Query:    7 SSSTTTGVGVVIYVEEVVVGGAALLQAVPVVGEVCTMFLAFKALVDTARSNQDDLRNLQDVCDVVIKGVLGQRSGSLDPLKQGFEKLEHQVKKAEEIAKLCSGTRIRDRLKQCLLAGKISKDITPVQTNV------NQLVGANIL-------ATVVEINDQVRVTRL-----VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDSS---DEPRMVGLAGPGGVGKSTVASMVVAR 660
            ++S   GV V+ Y+ E   G A LLQ  P VG  C  +LAF+ LV TA SN+ +L  L ++ D+V++  + + +     ++Q    LE+ +K AE +A LC+G  ++ RLKQ  L  +I  +I  V+ NV      N LV  + L       A ++E  DQ     +     V +P+ AP IRDWYV R  V ++ C  L I +S    S   ++PRMVGLAGPGG GKSTVASMVV +
Sbjct:    2 AASQDFGVRVLTYIREFTAGAATLLQETPAVGIACKAYLAFEDLVQTATSNKLELSVLGELIDLVLQRYVKRCAEREQGVRQELLSLENHIKSAESVAGLCNGKGLK-RLKQLTLCRRICNEIESVRKNVLHFCTINNLVLTSELSFKLDDVARLLEAQDQTLKAVMEKPGRVNIPSGAPSIRDWYVERVKVEAQICHHLGIGTSNGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQ 239
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: A0A6H5KQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.850e-21
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:   31 GVVIYVEEVVVGGAA----LLQAVPVVGEVCTMFLAFKALVDTARSNQDDLRNLQDVCDVVIKGVLGQRSGSLDPLKQGFEKLEHQVKKAEEIAKLCSGTRIRDRLKQCLLAGKISKDITPVQTNVNQLVGANILATVVEINDQV 453
            G   + EEV    A+    LL+  PVVG VC  FLAF+ LV+TARSN+DDL  L+++C VV+ GVL +RS     L + FE LE  V KAEE+A+LC+ +    R+K+ +LA +I +DI  V  NV +   AN +A   + N +V
Sbjct:   30 GAATFSEEVPAANASEAAHLLEEFPVVGTVCKTFLAFEQLVETARSNKDDLATLRELCCVVVAGVLDKRSDR-SGLSKRFEALEKHVNKAEEVAQLCNSS---GRVKRKVLARRICEDIVSVMNNVVEFCAANNVAISNDTNAKV 170
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: D7G247_ECTSI (NB-ARC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G247_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-12
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:  469 VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDS------SDEPRMV-GLAGPGGVGKSTVASMVVAR 660
            VK+P+  PR+RDWYV R A V+ AC  L I SS+ DS      ++  R+V GLAGPGG GKSTVASMV+ R
Sbjct:    8 VKIPSGTPRVRDWYVQRRAEVAHACDHLEITSSSRDSFERNNSAENQRVVFGLAGPGGAGKSTVASMVITR 78
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.460e-10
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:  469 VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTS----DSSDEPRMVGLAGPGGVGKSTVASMVVAR 660
            VKVP+ APRI+ WY+ R   V + C+RL + S ++       +EPRMVGLAGP G GKSTV S+VVAR
Sbjct:  239 VKVPSRAPRIQAWYIPRSETVEDVCARLGVCSGSAVGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAR 306
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.690e-10
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  469 VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDSS---DEPRMVGLAGPGGVGKSTVASMVVAR 660
            V +P+ AP IRDWYV R  V ++ C  L I +S    S   ++PRMVGLAGPGG GKSTVASMVV +
Sbjct:    7 VNIPSGAPSIRDWYVERVGVATQICHHLGIGTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQ 73
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BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: D7FQM2_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.810e-9
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  469 VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDSS---DEPRMVGLAGPGGVGKSTVASMVVAR 660
            V +P+ AP IRDWYV    V ++ C  L I +S    S   ++PRMVGLAGPGG GKSTVASMVV +
Sbjct:    7 VNIPSGAPSIRDWYVEWVGVATQICHHLGIGTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQ 73
[Close]
BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-8
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  439 INDQVRVTRL---VKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDSSDEPRMVGLAGPGGVGKSTVASMVVAR 660
            + +Q RV  L   V++P  APRIRD +V R  V+S+ CS L I   T+    E ++VGLAG GG GKSTVASMV+ R
Sbjct:   11 LQEQRRVADLASTVRIPTTAPRIRDRFVERGEVISQVCSLLGIEDHTTAYPAEMKVVGLAGAGGSGKSTVASMVIRR 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5526.13814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KXU5_9PHAE2.350e-3139.33NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KQS9_9PHAE5.850e-2144.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G247_ECTSI1.610e-1256.34NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JK89_9PHAE1.460e-1054.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y4_ECTSI1.690e-1056.72NB-ARC and TPR containing protein n=1 Tax=Ectocarp... [more]
D7FQM2_ECTSI1.810e-955.22Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JL31_9PHAE2.310e-850.65NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5526contigL-elsbetiae_contig5526:10001..11195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7FZP7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size662
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.0911121-CDS-L-elsbetiae_contig5526:10000..102161622816582.0911121-CDS-L-elsbetiae_contig5526:10000..10216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5526 10001..10216 -
1691683662.8520916-CDS-L-elsbetiae_contig5526:10000..102161691683662.8520916-CDS-L-elsbetiae_contig5526:10000..10216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5526 10001..10216 -
1622816582.1014364-CDS-L-elsbetiae_contig5526:10751..111951622816582.1014364-CDS-L-elsbetiae_contig5526:10751..11195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5526 10752..11195 -
1691683662.8675525-CDS-L-elsbetiae_contig5526:10751..111951691683662.8675525-CDS-L-elsbetiae_contig5526:10751..11195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5526 10752..11195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5526.13814.1prot_L-elsbetiae_contig5526.13814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5526 10001..11195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5526.13814.1

>prot_L-elsbetiae_contig5526.13814.1 ID=prot_L-elsbetiae_contig5526.13814.1|Name=mRNA_L-elsbetiae_contig5526.13814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
PPSSSTTTGVGVVIYVEEVVVGGAALLQAVPVVGEVCTMFLAFKALVDTA
RSNQDDLRNLQDVCDVVIKGVLGQRSGSLDPLKQGFEKLEHQVKKAEEIA
KLCSGTRIRDRLKQCLLAGKISKDITPVQTNVNQLVGANILATVVEINDQ
VRVTRLVKVPAEAPRIRDWYVGREAVVSEACSRLTIASSTSDSSDEPRMV
GLAGPGGVGKSTVASMVVAR
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mRNA from alignment at L-elsbetiae_contig5526:10001..11195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5526.13814.1 ID=mRNA_L-elsbetiae_contig5526.13814.1|Name=mRNA_L-elsbetiae_contig5526.13814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1195bp|location=Sequence derived from alignment at L-elsbetiae_contig5526:10001..11195- (Laminarionema elsbetiae ELsaHSoW15)
CCACCATCAAGCTCGACCACTACGGGCGTTGGTGTTGTGATATATGTGGA
AGAGGTTGTGGTGGGAGGTGCCGCTCTGCTGCAGGCGGTGCCTGTGGTTG
GAGAGGTATGCACGATGTTTCTGGCGTTCAAGGCCCTCGTGGATACGGCC
AGGAGCAACCAGGACGACCTCCGAAACCTTCAGGACGTGTGCGACGTGGT
AATCAAAGGGGTCCTGGGGCAACGGTCGGGCAGCTTAGACCCGCTCAAAC
AAGGGTTTGAGAAACTGGAACACCAGGTGAAGAAGGCGGAGGAGATCGCC
AAGCTCTGTAGCGGAACCCGCATACGAGACAGGCTGAAACAGTGCCTCTT
GGCCGGCAAGATCTCCAAGGACATCACCCCTGTTCAGACTAATGTCAACC
AATTGGTTGGCGCGAACATCCTCGCCACCGTCGTTGAGATCAATGTAAGT
GGGCCTTCGCAGGCTCGAGTGGGGAGGTTGCCTCCAAATCCAAAAATGGG
ATGATTCATGTCGCGCGGTAGGGCGTGGGAGATAACACCTCGGGGCGACT
ACTATACTAGACTACTGCTGTTGTATCTTGTATTACCGGGGAGAGAGAGA
AGAAGAAGAAGAGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGCTGCTGCTGCTGTGTACCTTGTCCTCTTTGAATGTCCTAGGCG
ACAGGTTGGCAGGACAAGGACCAGTTTGGAGAGCTGTGATTTACTACGTA
CTATTAGAGTCAACTTGGAGACTCCTTGCGTCAAAAATAGGGTTGGAAAA
CTCTTGGATGTGAGATATCACCCCAAGCCCGATTTAGCCTTCTAGACTGA
TGAGGTTATGAACCAAGCAAGGGAGTTATTCCGTACAGGGGTGGTGTGAT
ATGATTCCGGCCGAGTACTAATCCATTAATTATATCTCGCTACCGCCATC
GCTGGTACCCTCCGCCGTGGTTTATCCAGGATCAAGTTAGGGTTACCCGC
TTAGTCAAGGTCCCCGCCGAAGCCCCCCGTATTCGGGATTGGTACGTCGG
GCGCGAAGCTGTAGTATCCGAGGCGTGTAGCCGCCTCACAATCGCGAGCA
GCACGAGTGACTCCTCCGATGAGCCGCGGATGGTCGGGCTGGCGGGCCCC
GGCGGCGTGGGGAAGTCCACCGTCGCCTCGATGGTGGTCGCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5526:10001..11195-

>mRNA_L-elsbetiae_contig5526.13814.1 ID=mRNA_L-elsbetiae_contig5526.13814.1|Name=mRNA_L-elsbetiae_contig5526.13814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig5526:10001..11195- (Laminarionema elsbetiae ELsaHSoW15)
CCACCATCAAGCTCGACCACTACGGGCGTTGGTGTTGTGATATATGTGGA
AGAGGTTGTGGTGGGAGGTGCCGCTCTGCTGCAGGCGGTGCCTGTGGTTG
GAGAGGTATGCACGATGTTTCTGGCGTTCAAGGCCCTCGTGGATACGGCC
AGGAGCAACCAGGACGACCTCCGAAACCTTCAGGACGTGTGCGACGTGGT
AATCAAAGGGGTCCTGGGGCAACGGTCGGGCAGCTTAGACCCGCTCAAAC
AAGGGTTTGAGAAACTGGAACACCAGGTGAAGAAGGCGGAGGAGATCGCC
AAGCTCTGTAGCGGAACCCGCATACGAGACAGGCTGAAACAGTGCCTCTT
GGCCGGCAAGATCTCCAAGGACATCACCCCTGTTCAGACTAATGTCAACC
AATTGGTTGGCGCGAACATCCTCGCCACCGTCGTTGAGATCAATCCACCA
TCAAGCTCGACCACTACGGGCGTTGGTGTTGTGATATATGTGGAAGAGGT
TGTGGTGGGAGGTGCCGCTCTGCTGCAGGCGGTGCCTGTGGTTGGAGAGG
TATGCACGATGTTTCTGGCGTTCAAGGCCCTCGTGGATACGGCCAGGAGC
AACCAGGACGACCTCCGAAACCTTCAGGACGTGTGCGACGTGGTAATCAA
AGGGGTCCTGGGGCAACGGTCGGGCAGCTTAGACCCGCTCAAACAAGGGT
TTGAGAAACTGGAACACCAGGTGAAGAAGGCGGAGGAGATCGCCAAGCTC
TGTAGCGGAACCCGCATACGAGACAGGCTGAAACAGTGCCTCTTGGCCGG
CAAGATCTCCAAGGACATCACCCCTGTTCAGACTAATGTCAACCAATTGG
TTGGCGCGAACATCCTCGCCACCGTCGTTGAGATCAATGATCAAGTTAGG
GTTACCCGCTTAGTCAAGGTCCCCGCCGAAGCCCCCCGTATTCGGGATTG
GTACGTCGGGCGCGAAGCTGTAGTATCCGAGGCGTGTAGCCGCCTCACAA
TCGCGAGCAGCACGAGTGACTCCTCCGATGAGCCGCGGATGGTCGGGCTG
GCGGGCCCCGGCGGCGTGGGGAAGTCCACCGTCGCCTCGATGGTGGTCGC
TCGAGATCAAGTTAGGGTTACCCGCTTAGTCAAGGTCCCCGCCGAAGCCC
CCCGTATTCGGGATTGGTACGTCGGGCGCGAAGCTGTAGTATCCGAGGCG
TGTAGCCGCCTCACAATCGCGAGCAGCACGAGTGACTCCTCCGATGAGCC
GCGGATGGTCGGGCTGGCGGGCCCCGGCGGCGTGGGGAAGTCCACCGTCG
CCTCGATGGTGGTCGCTCGA
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