mRNA_L-elsbetiae_contig5522.13810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5522.13810.1
Unique NamemRNA_L-elsbetiae_contig5522.13810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5522.13810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5522contigL-elsbetiae_contig5522:11381..11948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5522.13810.1prot_L-elsbetiae_contig5522.13810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5522 11382..11729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.5153065-UTR-L-elsbetiae_contig5522:11380..113811622816581.5153065-UTR-L-elsbetiae_contig5522:11380..11381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 11381..11381 +
1691683662.436203-UTR-L-elsbetiae_contig5522:11380..113811691683662.436203-UTR-L-elsbetiae_contig5522:11380..11381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 11381..11381 +
1622816581.536581-UTR-L-elsbetiae_contig5522:11729..119481622816581.536581-UTR-L-elsbetiae_contig5522:11729..11948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 11730..11948 +
1691683662.4625397-UTR-L-elsbetiae_contig5522:11729..119481691683662.4625397-UTR-L-elsbetiae_contig5522:11729..11948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 11730..11948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.5267549-CDS-L-elsbetiae_contig5522:11381..117291622816581.5267549-CDS-L-elsbetiae_contig5522:11381..11729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 11382..11729 +
1691683662.4507933-CDS-L-elsbetiae_contig5522:11381..117291691683662.4507933-CDS-L-elsbetiae_contig5522:11381..11729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 11382..11729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5522.13810.1

>prot_L-elsbetiae_contig5522.13810.1 ID=prot_L-elsbetiae_contig5522.13810.1|Name=mRNA_L-elsbetiae_contig5522.13810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MLRGCERKKPELAAFLRRYAFEVLWGSYPNDRYNSQLALHCIPQTAVWTM
SIPDSQGWLKCLVYATIHAASVSFVFQPNLVVSPRFQVCFSILILRRINK
THPVQSTRILGSFGT*
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mRNA from alignment at L-elsbetiae_contig5522:11381..11948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5522.13810.1 ID=mRNA_L-elsbetiae_contig5522.13810.1|Name=mRNA_L-elsbetiae_contig5522.13810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=568bp|location=Sequence derived from alignment at L-elsbetiae_contig5522:11381..11948+ (Laminarionema elsbetiae ELsaHSoW15)
CATGCTTAGAGGATGTGAACGCAAAAAACCAGAGCTCGCGGCGTTTCTTA
GGCGATACGCATTCGAAGTTTTGTGGGGCTCATATCCGAACGACCGTTAC
AATTCACAACTTGCGCTTCATTGCATCCCTCAGACTGCGGTTTGGACCAT
GAGCATCCCTGACTCTCAGGGATGGTTAAAGTGTCTGGTTTACGCGACGA
TTCACGCTGCATCTGTCTCATTTGTCTTCCAACCCAATCTGGTTGTTTCT
CCGCGATTTCAAGTCTGTTTTTCGATTTTGATTTTGCGACGTATCAATAA
GACACACCCGGTCCAGTCGACCCGAATCCTTGGCTCTTTTGGGACTTAAA
AAGTCGATTCTGATTTCGATTTCTGAAAAAGTCGATTCTGATTTCGATTT
CTGATTCTGATTTCTGCGTTAAGACCGGCTCTCACTAGAAGTATATTTGA
AATCGTTGAAAACGATTCCAAGTCTGGCAAAACAGCTGCAGGTATCGGAC
GATTGGTCTGCTCTCTTGCTTCACCCTCTGGAGTGTGTATCCTTGAGCAA
CGTCTGGAAGGAGACTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5522:11381..11948+

>mRNA_L-elsbetiae_contig5522.13810.1 ID=mRNA_L-elsbetiae_contig5522.13810.1|Name=mRNA_L-elsbetiae_contig5522.13810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig5522:11381..11948+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTAGAGGATGTGAACGCAAAAAACCAGAGCTCGCGGCGTTTCTTAG
GCGATACGCATTCGAAGTTTTGTGGGGCTCATATCCGAACGACCGTTACA
ATTCACAACTTGCGCTTCATTGCATCCCTCAGACTGCGGTTTGGACCATG
AGCATCCCTGACTCTCAGGGATGGTTAAAGTGTCTGGTTTACGCGACGAT
TCACGCTGCATCTGTCTCATTTGTCTTCCAACCCAATCTGGTTGTTTCTC
CGCGATTTCAAGTCTGTTTTTCGATTTTGATTTTGCGACGTATCAATAAG
ACACACCCGGTCCAGTCGACCCGAATCCTTGGCTCTTTTGGGACTTAAAT
GCTTAGAGGATGTGAACGCAAAAAACCAGAGCTCGCGGCGTTTCTTAGGC
GATACGCATTCGAAGTTTTGTGGGGCTCATATCCGAACGACCGTTACAAT
TCACAACTTGCGCTTCATTGCATCCCTCAGACTGCGGTTTGGACCATGAG
CATCCCTGACTCTCAGGGATGGTTAAAGTGTCTGGTTTACGCGACGATTC
ACGCTGCATCTGTCTCATTTGTCTTCCAACCCAATCTGGTTGTTTCTCCG
CGATTTCAAGTCTGTTTTTCGATTTTGATTTTGCGACGTATCAATAAGAC
ACACCCGGTCCAGTCGACCCGAATCCTTGGCTCTTTTGGGACTTAA
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