mRNA_L-elsbetiae_contig5520.13807.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5520.13807.1
Unique NamemRNA_L-elsbetiae_contig5520.13807.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5520.13807.1 vs. uniprot
Match: A0A6H5L8A9_9PHAE (HTTM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8A9_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 5.050e-135
Identity = 217/295 (73.56%), Postives = 243/295 (82.37%), Query Frame = 3 
Query:   48 RGAPKEGVPTTDSAGVKDAAAADPPLQLRAPRHGGYTAAVRRSGGREAQMLRGEPGYHLGLFRVAYGVLLVQRTLAFMSSGAVDASFGRGDSPASSPGSAAAALPPSVINFGHGFLLLGGDLGSPTADAVRSMCWCLCAAGAAISVGFRPNAVAFAAALMQLCLLLLEKSVYTDEAYLFALMGLLLSCTDCGKALGLDAPSLGEESDAGXXXXXXXXX----NQPPDTVPHWHTVLLRFQVCIVHIHRGLAKATTLDWLLGGQPLLHTLETMPPMQLARRVAEWASSSEIPGLGG 920
            RG  KEGV  +++ G +D   A P  QLRAPRHGG+  + + +GGREA MLRGEPGYHLGLFR+ YG+LLVQRTLAFMSSGAVDASF  G+SPASSPG  A   P +VINFGHGFLLLGG+LGSPTADAVR+ CWCLCAAGAAISVGFRPNA+AFAA+LMQL LLLLEKSVYTDEAYLFAL+GLLLSCTDCGK LGLDAP L E+  AG             +QPPDTVPHWH VL+RFQVCIVHIHRGLAKA+TLDWL+ GQPLLHT+E +PP  LARR AEWA++SEIPGLGG
Sbjct:    6 RGRSKEGVLASNAVGAQDKPEAAP--QLRAPRHGGWKGS-KSAGGREAHMLRGEPGYHLGLFRIGYGILLVQRTLAFMSSGAVDASFVTGESPASSPGGVA---PKNVINFGHGFLLLGGELGSPTADAVRTACWCLCAAGAAISVGFRPNAMAFAASLMQLFLLLLEKSVYTDEAYLFALIGLLLSCTDCGKTLGLDAPVLEEDGAAGNAVGGGGRGRETRSQPPDTVPHWHVVLVRFQVCIVHIHRGLAKASTLDWLIRGQPLLHTIEALPPAHLARRAAEWAAASEIPGLGG 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5520.13807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8A9_9PHAE5.050e-13573.56HTTM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5520contigL-elsbetiae_contig5520:6494..9795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVitamin K-dependent gamma-carboxylase
Ec32 orthologEc-04_006120.1
Exons4
Model size923
Cds size900
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5520.13807.1prot_L-elsbetiae_contig5520.13807.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5520 6517..9795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.4198365-UTR-L-elsbetiae_contig5520:6493..65161622816581.4198365-UTR-L-elsbetiae_contig5520:6493..6516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5520 6494..6516 +
1691683662.3669627-UTR-L-elsbetiae_contig5520:6493..65161691683662.3669627-UTR-L-elsbetiae_contig5520:6493..6516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5520 6494..6516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.434481-CDS-L-elsbetiae_contig5520:6516..67181622816581.434481-CDS-L-elsbetiae_contig5520:6516..6718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 6517..6718 +
1691683662.3841748-CDS-L-elsbetiae_contig5520:6516..67181691683662.3841748-CDS-L-elsbetiae_contig5520:6516..6718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 6517..6718 +
1622816581.4460375-CDS-L-elsbetiae_contig5520:7958..82631622816581.4460375-CDS-L-elsbetiae_contig5520:7958..8263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 7959..8263 +
1691683662.3966956-CDS-L-elsbetiae_contig5520:7958..82631691683662.3966956-CDS-L-elsbetiae_contig5520:7958..8263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 7959..8263 +
1622816581.4624796-CDS-L-elsbetiae_contig5520:8687..89121622816581.4624796-CDS-L-elsbetiae_contig5520:8687..8912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 8688..8912 +
1691683662.4167647-CDS-L-elsbetiae_contig5520:8687..89121691683662.4167647-CDS-L-elsbetiae_contig5520:8687..8912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 8688..8912 +
1622816581.4772124-CDS-L-elsbetiae_contig5520:9627..97951622816581.4772124-CDS-L-elsbetiae_contig5520:9627..9795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 9628..9795 +
1691683662.4262297-CDS-L-elsbetiae_contig5520:9627..97951691683662.4262297-CDS-L-elsbetiae_contig5520:9627..9795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5520 9628..9795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5520.13807.1

>prot_L-elsbetiae_contig5520.13807.1 ID=prot_L-elsbetiae_contig5520.13807.1|Name=mRNA_L-elsbetiae_contig5520.13807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
MQQRRGPGRGAPKEGVPTTDSAGVKDAAAADPPLQLRAPRHGGYTAAVRR
SGGREAQMLRGEPGYHLGLFRVAYGVLLVQRTLAFMSSGAVDASFGRGDS
PASSPGSAAAALPPSVINFGHGFLLLGGDLGSPTADAVRSMCWCLCAAGA
AISVGFRPNAVAFAAALMQLCLLLLEKSVYTDEAYLFALMGLLLSCTDCG
KALGLDAPSLGEESDAGGGGGGAAARNQPPDTVPHWHTVLLRFQVCIVHI
HRGLAKATTLDWLLGGQPLLHTLETMPPMQLARRVAEWASSSEIPGLGGD
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mRNA from alignment at L-elsbetiae_contig5520:6494..9795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5520.13807.1 ID=mRNA_L-elsbetiae_contig5520.13807.1|Name=mRNA_L-elsbetiae_contig5520.13807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3302bp|location=Sequence derived from alignment at L-elsbetiae_contig5520:6494..9795+ (Laminarionema elsbetiae ELsaHSoW15)
GACACACAGGACACAGGAGAGGGATGCAGCAGCGCCGAGGCCCCGGTAGG
GGAGCTCCAAAGGAAGGTGTGCCTACGACCGATAGTGCTGGTGTAAAAGA
TGCAGCTGCAGCCGATCCTCCCTTGCAGCTGAGGGCGCCGCGACATGGCG
GTTATACAGCAGCAGTCCGCAGGAGCGGCGGACGAGAGGCACAAATGCTT
CGCGGCGAACCGGGATACCACCTAGGTGGGTGTCTAATCCTCACGATTAT
TTGCGCAGGGAACGCAGTGGTTGACCACACGGACGTGTTGTGCAGCGTAA
AGACTGAAACCTTTCTCTAGGTAGACATGTAACTACACGCGGAGAATTCC
CACACCCGGTGTGAACAGCCCCGAGATCCCTCTGGTGCACATCGCCGCAA
TGTCTGTGCGTGTGCCCGCTGAACCAAACACGGCCAATGCACGGCAGCTT
TCATCGTCCTAGCAATATGCTTAAGGTTAGAAAGCTCAAGCGGGTAGCCA
GCGGACACTCGAGAGCCAGCCTGGAGTTACCCTGCCTGCACGTACCGTAG
GTGACACAAGATACCACCCCCCCTGGACATATTTTCAAAGCTCAATTACT
CCCCAGCAAGAAGAGTGCCAATGCCGAAATGGGGCGGCGCTGGAAAGATC
TAGTCGGGGATTGCCCAGAAATGTGTCGTTTGGTGCTGGCGCCCTCTTCG
CTACGGAGGAATCGAGCTTTGAAAATCTGCCCAGGGGGGGGTGGTATCTT
GTGTCACCTAGGGATGGTATGCGCCTCCCCCGCCCCCGGTAGCCATCGGC
AGCTAGCACAGCTGCTGCTGTTGTTGTCCATGTAAAGCACCAACCAACTG
CATTCTACAAACATATGCATGTACAAACTGTGCGGTCGGGCCTCTCCGAC
CGTCGTTGTGCGGCTCAGCTGCTGGTGTCCCTGCGCCACCCGCACCCGCC
GTAAAGGTACGTGACTGCTGTGCGACGCATTTCGCGTTGATAAGGTACGG
CGTGAAAATGTAAATATAAATATCTGTCGGTCGTCGGCCGTCGGTCGTCG
GTCGTCGGTAAGCGCGGCGGCAGGCAACCAGCTCGCGCGAGCGCTGCTCA
CACCAATCTCGAAAGAGAGCACCTCATAAATAGTCTACACACGCTTCTCA
AACCGAGTTGCTCGCGTTTGTTGGGACGAAGCCTCCTCAAGGCCCGGGTC
CTCTCGGTGGCTTCCATGCGTCCTAAAACAAAAAATCACTCAAGACCGAA
AAAAGTCGTCTCAGCTTCGTCTTCTTCTTCTTCAAAACAGAACGACTTTC
CCCGCAGCCCGTGTGTGTTTTAAGGCTCCATGCCTTAGACTTCAGTACAC
GCAGGAATATTATATGTACACATATACCACGCACGCCCTGGACGCTGCTT
TTGTTCCCCCTCCGACACCCGCCCACCCCAAAACTTCCCGCACACAACCG
AACACCAATGATCAGGACTTTTCCGCGTAGCCTACGGCGTCCTCCTCGTC
CAGCGCACCCTCGCCTTCATGAGCAGCGGGGCCGTGGACGCCTCCTTCGG
GAGGGGGGACAGCCCCGCGTCGTCCCCGGGGAGCGCGGCGGCGGCGCTGC
CGCCAAGCGTGATCAACTTCGGCCACGGCTTCCTGCTGCTGGGCGGAGAC
CTGGGCTCTCCCACGGCGGACGCCGTGCGCTCCATGTGCTGGTGCCTGTG
TGCCGCCGGGGCCGCTATCTCCGTGGGGTTTCGCCCGAACGCGGTGGCGT
TTGCGGCCGCGTTGATGCAGGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CGTAGTGTCAGCGGCACCTTCCTGAAATTCGGTCGAGCGGAAAACAGACG
GGCGGCGGACGGTATACTACTACTATTGTACTGTACTGTAGAGATGGTGA
ACTTTCGCTCGTACTCCGGACGTATGTGTATGTATGTATGTATGTATGTA
TGTATGTATTCCTCCGACATCCAACTTTCCCCCCCCATTCTCTTCCCCGT
GCTTGGTCTCCGTGCCACACCACGCCACGCCACGCTACGCCACCCTCGCC
CTCGCCCTCGCTCTCTCGTTCCTTCTCTGGCCTTATTTTCCTCTTGCTGC
TCCATTCCGTTCCGTTCCGTTTTGCCCCGCCCCACCCCGCCCCGCCCTGC
CCTGCCCTGCCCTGCCTTGCCCTGCCCGGCCCCGCCGGCAAAAGCTGTGC
CTGCTGCTGCTGGAGAAGAGCGTGTACACGGACGAGGCGTACCTGTTCGC
GCTGATGGGCCTCCTCCTCTCCTGCACCGACTGCGGGAAGGCCCTGGGGT
TGGATGCTCCTAGCCTCGGTGAGGAGAGTGATGCTGGCGGCGGCGGGGGG
GGAGCGGCAGCGCGGAACCAGCCGCCAGACACGGTGCCACACTGGCACAC
CGTGCTGCTGAGATTTCAGGTGTGAGATGAGATACATAGAAGAAGCAGGC
AGGCAGGCAGGCAGGCAGGCAAGCAACGGATAAAATATAAAAATAGAACG
CCTCTTTCTATGTTTGATGTAGACCGCTCACATATTGTAGACGTTTTTGT
TAGAAAGTGGTCGTCTACAAACTGCCGTTGTGTATGTAGTATCTGTGTAC
ACGCCCCCCGTAGCGCCTCCACTTTACGACCGCTGCGACTGCTGTCACTG
GTCTTGAATCGCACACCGCCTACATACCTGCACACACACACACGCGCGCC
CCGGGGCTGTCGCGGACTACAATACGTCACGTTGAGGAGAAATCAAAAAC
GGTGCCTACATTTCTCGCGATAAAACCCAAGGCAAGAACCGCAGGAGGAA
GGTGGGGCAAAAAATATATTTAAAAAAGAAGAAAAAAAAACAGTGTTCAC
GTCCTCCTGTGTGACCCCGGCTGGTTCTAGTTGTACAGACAAATGCACTG
CAAAGTGTGGTACCTCTTAAGTACACCGCAATGTGTAGTACACGTCTCCA
CTTGGGGGGACTGCCGCCAAAATAAATGGGAAGGACACACGCACACACAC
ACACATAGCCCACACGTAAGAGCCAAGACTCTATGGGTTTCAAACGCCAC
GTTGTTTATTTATGTAGCATCACACACTCCCCACGGCGGGGTGTCCTTTC
GCGTCTTTTCGTTCGCCTTCGCAATAAAACACAGGTTTGCATCGTGCACA
TCCACCGGGGCCTCGCCAAGGCCACCACGCTCGACTGGCTTCTCGGGGGT
CAGCCGCTCCTACACACCCTGGAGACCATGCCTCCGATGCAGCTGGCCCG
GAGGGTGGCTGAGTGGGCTTCGTCGAGCGAAATCCCAGGACTGGGAGGAG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5520:6494..9795+

>mRNA_L-elsbetiae_contig5520.13807.1 ID=mRNA_L-elsbetiae_contig5520.13807.1|Name=mRNA_L-elsbetiae_contig5520.13807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig5520:6494..9795+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGCGCCGAGGCCCCGGTAGGGGAGCTCCAAAGGAAGGTGTGCC
TACGACCGATAGTGCTGGTGTAAAAGATGCAGCTGCAGCCGATCCTCCCT
TGCAGCTGAGGGCGCCGCGACATGGCGGTTATACAGCAGCAGTCCGCAGG
AGCGGCGGACGAGAGGCACAAATGCTTCGCGGCGAACCGGGATACCACCT
AGATGCAGCAGCGCCGAGGCCCCGGTAGGGGAGCTCCAAAGGAAGGTGTG
CCTACGACCGATAGTGCTGGTGTAAAAGATGCAGCTGCAGCCGATCCTCC
CTTGCAGCTGAGGGCGCCGCGACATGGCGGTTATACAGCAGCAGTCCGCA
GGAGCGGCGGACGAGAGGCACAAATGCTTCGCGGCGAACCGGGATACCAC
CTAGGACTTTTCCGCGTAGCCTACGGCGTCCTCCTCGTCCAGCGCACCCT
CGCCTTCATGAGCAGCGGGGCCGTGGACGCCTCCTTCGGGAGGGGGGACA
GCCCCGCGTCGTCCCCGGGGAGCGCGGCGGCGGCGCTGCCGCCAAGCGTG
ATCAACTTCGGCCACGGCTTCCTGCTGCTGGGCGGAGACCTGGGCTCTCC
CACGGCGGACGCCGTGCGCTCCATGTGCTGGTGCCTGTGTGCCGCCGGGG
CCGCTATCTCCGTGGGGTTTCGCCCGAACGCGGTGGCGTTTGCGGCCGCG
TTGATGCAGGACTTTTCCGCGTAGCCTACGGCGTCCTCCTCGTCCAGCGC
ACCCTCGCCTTCATGAGCAGCGGGGCCGTGGACGCCTCCTTCGGGAGGGG
GGACAGCCCCGCGTCGTCCCCGGGGAGCGCGGCGGCGGCGCTGCCGCCAA
GCGTGATCAACTTCGGCCACGGCTTCCTGCTGCTGGGCGGAGACCTGGGC
TCTCCCACGGCGGACGCCGTGCGCTCCATGTGCTGGTGCCTGTGTGCCGC
CGGGGCCGCTATCTCCGTGGGGTTTCGCCCGAACGCGGTGGCGTTTGCGG
CCGCGTTGATGCAGCTGTGCCTGCTGCTGCTGGAGAAGAGCGTGTACACG
GACGAGGCGTACCTGTTCGCGCTGATGGGCCTCCTCCTCTCCTGCACCGA
CTGCGGGAAGGCCCTGGGGTTGGATGCTCCTAGCCTCGGTGAGGAGAGTG
ATGCTGGCGGCGGCGGGGGGGGAGCGGCAGCGCGGAACCAGCCGCCAGAC
ACGGTGCCACACTGGCACACCGTGCTGCTGAGATTTCAGCTGTGCCTGCT
GCTGCTGGAGAAGAGCGTGTACACGGACGAGGCGTACCTGTTCGCGCTGA
TGGGCCTCCTCCTCTCCTGCACCGACTGCGGGAAGGCCCTGGGGTTGGAT
GCTCCTAGCCTCGGTGAGGAGAGTGATGCTGGCGGCGGCGGGGGGGGAGC
GGCAGCGCGGAACCAGCCGCCAGACACGGTGCCACACTGGCACACCGTGC
TGCTGAGATTTCAGGTTTGCATCGTGCACATCCACCGGGGCCTCGCCAAG
GCCACCACGCTCGACTGGCTTCTCGGGGGTCAGCCGCTCCTACACACCCT
GGAGACCATGCCTCCGATGCAGCTGGCCCGGAGGGTGGCTGAGTGGGCTT
CGTCGAGCGAAATCCCAGGACTGGGAGGAGACGTTTGCATCGTGCACATC
CACCGGGGCCTCGCCAAGGCCACCACGCTCGACTGGCTTCTCGGGGGTCA
GCCGCTCCTACACACCCTGGAGACCATGCCTCCGATGCAGCTGGCCCGGA
GGGTGGCTGAGTGGGCTTCGTCGAGCGAAATCCCAGGACTGGGAGGAGAC
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