mRNA_L-elsbetiae_contig552.13805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig552.13805.1 vs. uniprot
Match: D8LG83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG83_ECTSI) HSP 1 Score: 671 bits (1731), Expect = 7.290e-226 Identity = 394/735 (53.61%), Postives = 464/735 (63.13%), Query Frame = 1 Query: 163 MHQQGDPLAPSWVVLVDTDEFLWGAEVGAAAVGAAAETGVNATSTLPEVLAAHSPTCCLKVSAVQHGTSGFSKTPRGLLLENFLTHADPASLELNGPPKVRWWQPLPLRDGRGGGEGASSGGLSEETEKAAKTATFLG-GLGGTLGSMLGGSCRCTAAPVAELAVRRYPATREDLIAKERRYAAEXXXXXXXXERQPAETKIEFDATLETAALNERRSDQILAWRCVVRRLLSRAADGRHVLSGRPQGSLSPHHPVAHGVPAMDPGGRYERERTDACVSVVRSSPTVAGTVWGPPD--PVWLQHACSTRYVFVHSFEDTGEREVVQALESHPWTRSHVAQAAVAGGGCALTSAIPAAEERRGATGTALSDVCGCTSD--IAPGCWRYCPKLQRGLLTAQEYGNGSXXXXXXNINRTRRQLVHDWLLRFKLGSEPASPPMVLVERDEDFLLASKQGLFPFVSTSVVTVRHPLCSPATGLDPAVKTTDPHGDGSSTADGXXXXXAGSLREWREVWEQVLVKQVPH-VRGDVWVVRFEDLLSQEEETTSALWAAVGLPPLSPYGAPGSVRDD----GKKSPSKGSI------------------PDGGGGNRFSRSRRLVGGDAMSKAPPEVRNRAIPAACRARVAACERDPACELELLRSASLLDYFGYGGGGEMLNSQRFLWGKEELEWLGKRLGSERNDAAVERVHMLSLKQAHGAVLGSDDDDEPSVVLPQAPH 2283 MH GD LAP WVVL+DTDEFLW E G E G LPE L + S TCCL+VS VQHGTSGF K+PRGLLLENFLTHADP S ELNGPPKV L RD G SSG E+ ++FLG G GG + M G CRC A V + AVRRYP TRED+ A+ RRY+ R +EFD +LETAALN+ +SD ++ W CVVRRLL RAA+G+H+++GRPQ SLSPHHP++HG AMDP G E RT+AC+S VR+SP A T WG PD P WLQH C TRYVFVHSFED GE V+++L SHPW R H Q AV G G +LT+ + ER G T LS++CGC+ + A GCWRYCP LQ+ LL +E IN RRQLV DWLLR L +P P +VLVERD D L+ASKQGLFPFVSTS++TVRHP+C+ A ++T D ADG AG LREWREVW QVL++QVP V G +WVVRFEDLLSQEE SALWAAVGLPP+SPY P + + KK P G G R RRL+ GDA S+A VRN AIP CR R+ ACE+DPAC+LELLRSASLLD+FGYGG GE+LNSQRFLWGKEELEWLGKRL +E + E + +L+ ++ G L D DDEPSV+L Q P Sbjct: 1 MHDGGDRLAPRWVVLLDTDEFLWAREAG--------EIG------LPEALESRSTTCCLQVSTVQHGTSGFPKSPRGLLLENFLTHADPTSPELNGPPKVI----LRFRDDASGTASESSG---EDVNPPVSVSSFLGDGDGGGVTEMREG-CRCEEAGVGDFAVRRYPMTREDVAARGRRYSTVLQWQQQQQRRAMTREAVEFDESLETAALNDHKSDAMVEWSCVVRRLLDRAANGKHLVTGRPQASLSPHHPISHGARAMDPYGEEELRRTEACMSAVRASPAAADTAWGSPDSSPEWLQHLCFTRYVFVHSFEDAGEAAVMRSLASHPWVRVHGGQGAVGGEGSSLTTVFSSPREREGMAETVLSELCGCSKEGSSAAGCWRYCPDLQQRLLAPEE------------INGARRQLVQDWLLRVNL--KPKKPAVVLVERDTDMLVASKQGLFPFVSTSLLTVRHPICTTA------LETGD--------ADGKCGTAAG-LREWREVWRQVLIEQVPRTVNGTIWVVRFEDLLSQEENAASALWAAVGLPPISPYLPPATTKPAVIPISKKXXXXXXXXXXXXXXXXXXXXXXXXXPLGSG-----RRRRLIMGDATSRASSTVRNTAIPTTCRLRIGACEKDPACKLELLRSASLLDFFGYGGVGELLNSQRFLWGKEELEWLGKRLAAEPS----ELLDVLNGRE-RGGRLDFDSDDEPSVILLQPPQ 674
BLAST of mRNA_L-elsbetiae_contig552.13805.1 vs. uniprot
Match: A0A6H5JI79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI79_9PHAE) HSP 1 Score: 522 bits (1344), Expect = 3.810e-169 Identity = 308/626 (49.20%), Postives = 379/626 (60.54%), Query Frame = 1 Query: 613 SCRCTAAPVAELAVRRYPATREDLIAKERRYAAEXXXXXXXXERQPAETK--IEFDATLETAALNERRSDQILAWRCVVRRLLSRAADGRHVLSGRPQGSLSPHHPVAHGVPAMDPGGRYERERTDACVSVVRSSPTVAG-TVWGPPD--PVWLQHACSTRYVFVHSFEDTGEREVVQALESHPWTRSHVAQAAVAGGGCALTSAIPAAEERRGATGTALSDVCGCTSD--IAPGCWRYCPKLQRGLLTAQEYGNGSXXXXXXNINRTRRQLVHDWLLRFKLGSEPASPPMVLVERDEDFLLASKQGLFPFVSTSVVTVRHPLCSPATG-----------LDPAVKTTDPHG--DGSSTADGXXXXXAGSLREWREVWEQVLVKQVPH-VRGDVWVVRFEDLLSQEEETTSALWAAVGLPPLSPYGAPGSVRD--------------------DGKKSPSKGSIPDGGGGNRFSRSR-----------------------------RLVGGDAMSKAPPEVRNRAIPAACRARVAACERDPACELELLRSASLLDYFGYGGGGEMLNSQRFLWGKEELEWLGKRLGSERNDAAVERVHMLSLKQAHGAVLGSDDDDEPSVVLPQAP 2280 +CRC A V + AVRRYP TRED+ AK RRY+ RQ T+ +EF+ +LETAALN+ +S+ ++ W CVVRRLL RAA+G+HV++GRPQ SLSPHHP++HG A+DP G E R +AC+S VR+SP A T W PD P WLQH CSTRYVFVHSFE+TGE V+++L SHPW R H Q AV G G +LTS + ER G T T LS++CGC+ + A GC RYCP LQR LL +E IN RR+LV DWLLR L +P P +VLVERD D L+ASKQGLFPFVSTS++TVRHP+C+ G + P+ + HG DG D A LREWREVW QVL++QVP + G +WVVRFEDLLSQ E+ SALWA VGLPP+SPY P + + G G R + R RL+ GDAMS+A P V+N AIP CR R+ ACE+DPAC LELLRSA+LLD+FGYGG GE+LNSQRFLWGKEELEWLGKRL +E + E + +L+ ++ G S+ DDEPSV+LPQAP Sbjct: 4 ACRCEEAAVGDFAVRRYPMTREDVAAKGRRYST-VLQWQQKQPRQAMTTRGVVEFNESLETAALNDHKSEAMVEWSCVVRRLLDRAANGKHVVTGRPQASLSPHHPISHGARAIDPYGEEESRRMEACMSAVRASPAAAADTAWESPDSSPEWLQHLCSTRYVFVHSFENTGEAAVMRSLASHPWVRVHGGQGAVDGEGSSLTSVFSSPREREGMTETGLSELCGCSKEGSSAAGCLRYCPDLQRRLLAPEE------------INGARRKLVQDWLLRVNL--KPMKPAVVLVERDTDMLVASKQGLFPFVSTSLLTVRHPICTTVLGTGAADGKSRRSIHPSCHSHMVHGKCDGGVGCDA-----AAGLREWREVWRQVLIEQVPRTINGTIWVVRFEDLLSQAEDAASALWAVVGLPPISPYPPPATTKPAVIPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSGRRRLKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLIMGDAMSRASPAVQNTAIPKGCRQRIGACEKDPACALELLRSANLLDFFGYGGVGELLNSQRFLWGKEELEWLGKRLAAEPS----ELLDVLNGRE-RGGRFDSNSDDEPSVILPQAP 604
BLAST of mRNA_L-elsbetiae_contig552.13805.1 vs. uniprot
Match: A0A6H5JE36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE36_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.360e-40 Identity = 93/154 (60.39%), Postives = 102/154 (66.23%), Query Frame = 1 Query: 1 VLEPFVRAGIVKFQPRRATRTTNNSLDARESTSATHDADVLMAPVNECVQRYREMHQQGDPLAPSWVVLVDTDEFLWGAEVGAAAVGAAAETGVNATSTLPEVLAAHSPTCCLKVSAVQHGTSGFSKTPRGLLLENFLTHADPASLELNGPPKV 462 VLEPFVRAGIVKFQ R +D R +TS A M P+ ECV+ YR MH GD LAP WVVL+DTDE+LW E G +G LPE L A S TCCL+VS VQHGTSGFSK+PRGLLLENFLTHADP S ELNGPPKV Sbjct: 297 VLEPFVRAGIVKFQRRH--------IDPRNATSTPPSA--AMPPLTECVESYRGMHDWGDRLAPRWVVLLDTDEYLWAREAGK--IG------------LPEALEARSTTCCLQVSTVQHGTSGFSKSPRGLLLENFLTHADPTSPELNGPPKV 426 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig552.13805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig552.13805.1 >prot_L-elsbetiae_contig552.13805.1 ID=prot_L-elsbetiae_contig552.13805.1|Name=mRNA_L-elsbetiae_contig552.13805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=733bp MAPVNECVQRYREMHQQGDPLAPSWVVLVDTDEFLWGAEVGAAAVGAAAEback to top mRNA from alignment at L-elsbetiae_contig552:24765..34050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig552.13805.1 ID=mRNA_L-elsbetiae_contig552.13805.1|Name=mRNA_L-elsbetiae_contig552.13805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9286bp|location=Sequence derived from alignment at L-elsbetiae_contig552:24765..34050- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig552:24765..34050- >mRNA_L-elsbetiae_contig552.13805.1 ID=mRNA_L-elsbetiae_contig552.13805.1|Name=mRNA_L-elsbetiae_contig552.13805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4398bp|location=Sequence derived from alignment at L-elsbetiae_contig552:24765..34050- (Laminarionema elsbetiae ELsaHSoW15)back to top |