Homology
BLAST of mRNA_L-elsbetiae_contig5516.13803.1 vs. uniprot
Match:
D7G685_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G685_ECTSI)
HSP 1 Score: 159 bits (401), Expect = 6.960e-39
Identity = 124/372 (33.33%), Postives = 201/372 (54.03%), Query Frame = 1
Query: 7 KSNPMIWGFIRRIPAQETIRLVPDSFSEDLKKFIKLPGSLMDMLGFYHLKKEKVLGPDVAEAGIFGANKVIRGGSNAEGFIFDLAKSLQEASKLGRFINLQSVTAPLTAGREYKSLLENVENGREELMLEKKDLFKWA---DKGATTWATKAL---LCLGASFIPSIPLGSIRIMSRDSKLNDNTKGAYFSHMQVLESVRQQSM---PDGDTRDLDVFKKISTHFHPTTVLVRRNVEKAKQLDGQFGNSSKVEQGKMPSDLWGGQKLVKRMVEKLLDEAYELFVNKVKPAERALSIRILEEEGEKHAGTRENEDHINTEEVKSVARRLIDEENVTCDEASELTKMVFLVENFTSPPIRMKNKRGLQACHTFI 1095
K PMIW +R I QET+R+VPD E L+ F GS+++MLG + + + GIFG+ R S A I L ++L +A +L R + LQS PLT +E +++ NV+ G+E L +D K + D A T TKAL L + ++IP +PL +R ++R+ +L + +S +VL +R++S+ PD D D VF K+ T+F +VR E GQ G K +QG++ + W V MV L+ + + + V + L +L++EG+ + GTRENE+H+ T E+K+ A+RL D+ VTC++ S + ++++++FTS IR ++K + A +TF+
Sbjct: 143 KIRPMIWRVLRVISVQETLRVVPDE--ETLEGFTTREGSMLEMLGLKRFEDTEYSFHN-GSMGIFGSKLYFRDKSIATELISTLVQTLLQAFRLNRPVCLQSAVYPLTL-KELEAVAANVKFGKEAL----EDRAKHSQDTDTEAPTTKTKALEALLAVDGNWIPDLPLSILRTLNREGELLPTSLDGVYSKTRVLFKLRERSVYMVPDNDDGDKPVFDKVLTYFRLVANIVRNEKEIYVNNQGQIGPGRKYQQGRLANP-WTLAPHVDFMVMSLIKDRLKPIMELV-GEDVDLCWEVLKKEGQ-NPGTRENENHLFTPEIKAAAQRLKDK-GVTCEDISLFSAALYIIDSFTSACIRKQDKTEMWAMNTFV 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5516.13803.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.96e-39 / Id = 33.33 Sequence D7G685_ECTSI
Match Name E-value Identity Description
D7G685_ECTSI 6.960e-39 33.33 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-02_001330.1
Exons 2
Model size 1557
Cds size 1539
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816581.0034678-CDS-L-elsbetiae_contig5516:8423..9143 1622816581.0034678-CDS-L-elsbetiae_contig5516:8423..9143 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5516 8424..9143 -
1691683662.0964572-CDS-L-elsbetiae_contig5516:8423..9143 1691683662.0964572-CDS-L-elsbetiae_contig5516:8423..9143 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5516 8424..9143 -
1622816581.0138657-CDS-L-elsbetiae_contig5516:9241..10060 1622816581.0138657-CDS-L-elsbetiae_contig5516:9241..10060 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5516 9242..10060 -
1691683662.1063592-CDS-L-elsbetiae_contig5516:9241..10060 1691683662.1063592-CDS-L-elsbetiae_contig5516:9241..10060 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5516 9242..10060 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816581.0265813-UTR-L-elsbetiae_contig5516:10060..10078 1622816581.0265813-UTR-L-elsbetiae_contig5516:10060..10078 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5516 10061..10078 -
1691683662.1152668-UTR-L-elsbetiae_contig5516:10060..10078 1691683662.1152668-UTR-L-elsbetiae_contig5516:10060..10078 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5516 10061..10078 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5516.13803.1
>prot_L-elsbetiae_contig5516.13803.1 ID=prot_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=513bp
MIWGFIRRIPAQETIRLVPDSFSEDLKKFIKLPGSLMDMLGFYHLKKEKV LGPDVAEAGIFGANKVIRGGSNAEGFIFDLAKSLQEASKLGRFINLQSVT APLTAGREYKSLLENVENGREELMLEKKDLFKWADKGATTWATKALLCLG ASFIPSIPLGSIRIMSRDSKLNDNTKGAYFSHMQVLESVRQQSMPDGDTR DLDVFKKISTHFHPTTVLVRRNVEKAKQLDGQFGNSSKVEQGKMPSDLWG GQKLVKRMVEKLLDEAYELFVNKVKPAERALSIRILEEEGEKHAGTRENE DHINTEEVKSVARRLIDEENVTCDEASELTKMVFLVENFTSPPIRMKNKR GLQACHTFIHPTDGLLKDIITNRIKDDDALARTGVLVLTHRKHEMIKEVY AVMVVLGRAVFRLHGCVLDKGICPLDSLGHELNDGNRTQLLKSAGMWFLG LSDFTEHITRTFQLTLLIDKCIKLGRAPEQCPVVKQALREMHTTMNIAMT HYNIRKNERVAWG back to top mRNA from alignment at L-elsbetiae_contig5516:8424..10078-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5516.13803.1 ID=mRNA_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1655bp|location=Sequence derived from alignment at L-elsbetiae_contig5516:8424..10078- (Laminarionema elsbetiae ELsaHSoW15)GTGGAGAAGTCCAACCCT ATGATTTGGGGATTTATCAGGAGAATTCCTGC
TCAAGAAACGATTCGTTTAGTGCCGGACTCTTTCAGCGAGGATCTGAAGA
AGTTTATCAAGCTACCGGGTTCCCTTATGGATATGCTCGGCTTCTACCAC
TTGAAGAAGGAGAAGGTCCTCGGGCCGGACGTCGCCGAAGCAGGGATCTT
CGGGGCGAACAAGGTGATCAGGGGTGGGTCAAACGCGGAGGGATTTATCT
TTGATCTCGCGAAATCCCTTCAAGAAGCCTCTAAACTGGGTAGGTTCATC
AACCTCCAGTCCGTCACTGCTCCGCTCACAGCGGGTCGCGAGTACAAGAG
TCTTCTTGAAAATGTGGAGAACGGCAGAGAGGAGCTGATGTTGGAGAAGA
AAGATCTATTCAAGTGGGCAGACAAAGGTGCGACGACATGGGCAACGAAG
GCCCTCCTCTGTTTGGGAGCTTCCTTCATCCCGAGCATCCCTCTTGGTAG
CATTAGGATCATGTCCCGCGACAGCAAGCTGAACGACAACACTAAAGGAG
CCTACTTCTCGCACATGCAAGTTTTGGAATCCGTGCGACAGCAGTCCATG
CCCGACGGGGATACCAGAGACCTCGATGTGTTCAAGAAGATTTCGACCCA
CTTCCACCCGACGACGGTGTTGGTGAGAAGAAATGTTGAAAAAGCAAAAC
AACTGGACGGACAATTCGGGAACTCCAGCAAGGTTGAACAAGGAAAAATG
CCTTCGGATTTGTGGGGAGGTCAGAAGCTTGTTAAGCGGATGGTGGAAAA
GCTCCTGGATGAGGCATATGAGCTGTTCGTGAACAAG GTGTGTGTGCATT
CGTTTGCAGTCGAAGGAAAGGGAGTAGGCATGATCGTGTTATTTTTATGT
TTTAACTCAACGCACTTGTGCACTTGCCCGAACAGGTGAAACCTGCAGAG
CGCGCCTTGTCCATAAGGATCTTGGAGGAAGAGGGTGAAAAACATGCCGG
AACTAGGGAGAACGAGGACCACATCAACACGGAGGAAGTCAAATCTGTAG
CGCGGAGACTCATTGACGAGGAAAATGTCACTTGCGACGAAGCTAGTGAG
TTGACTAAGATGGTGTTCTTGGTCGAGAACTTCACGTCGCCGCCCATCAG
GATGAAGAACAAAAGGGGGCTACAGGCGTGTCACACCTTCATCCACCCTA
CAGACGGTCTACTGAAAGACATCATCACCAACAGAATCAAAGATGACGAC
GCTCTGGCGAGGACCGGGGTTTTGGTGTTGACACACAGGAAGCACGAGAT
GATCAAGGAGGTCTATGCTGTTATGGTCGTGCTCGGCCGCGCCGTGTTCC
GTCTACATGGGTGCGTACTCGACAAGGGCATCTGCCCTCTAGACTCTTTG
GGTCACGAACTTAACGACGGCAACCGGACTCAGCTTCTGAAAAGCGCCGG
GATGTGGTTCCTCGGCCTCTCCGACTTTACTGAACACATCACCAGGACCT
TCCAGCTCACACTGCTCATCGACAAATGTATCAAACTCGGGCGCGCCCCC
GAGCAGTGCCCAGTGGTGAAGCAAGCGTTAAGGGAGATGCATACGACTAT
GAACATTGCTATGACCCACTACAACATCAGGAAGAACGAGAGAGTCGCGT
GGGGA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5516:8424..10078-
>mRNA_L-elsbetiae_contig5516.13803.1 ID=mRNA_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3078bp|location=Sequence derived from alignment at L-elsbetiae_contig5516:8424..10078- (Laminarionema elsbetiae ELsaHSoW15) ATGATTTGGGGATTTATCAGGAGAATTCCTGCTCAAGAAACGATTCGTTT AGTGCCGGACTCTTTCAGCGAGGATCTGAAGAAGTTTATCAAGCTACCGG GTTCCCTTATGGATATGCTCGGCTTCTACCACTTGAAGAAGGAGAAGGTC CTCGGGCCGGACGTCGCCGAAGCAGGGATCTTCGGGGCGAACAAGGTGAT CAGGGGTGGGTCAAACGCGGAGGGATTTATCTTTGATCTCGCGAAATCCC TTCAAGAAGCCTCTAAACTGGGTAGGTTCATCAACCTCCAGTCCGTCACT GCTCCGCTCACAGCGGGTCGCGAGTACAAGAGTCTTCTTGAAAATGTGGA GAACGGCAGAGAGGAGCTGATGTTGGAGAAGAAAGATCTATTCAAGTGGG CAGACAAAGGTGCGACGACATGGGCAACGAAGGCCCTCCTCTGTTTGGGA GCTTCCTTCATCCCGAGCATCCCTCTTGGTAGCATTAGGATCATGTCCCG CGACAGCAAGCTGAACGACAACACTAAAGGAGCCTACTTCTCGCACATGC AAGTTTTGGAATCCGTGCGACAGCAGTCCATGCCCGACGGGGATACCAGA GACCTCGATGTGTTCAAGAAGATTTCGACCCACTTCCACCCGACGACGGT GTTGGTGAGAAGAAATGTTGAAAAAGCAAAACAACTGGACGGACAATTCG GGAACTCCAGCAAGGTTGAACAAGGAAAAATGCCTTCGGATTTGTGGGGA GGTCAGAAGCTTGTTAAGCGGATGGTGGAAAAGCTCCTGGATGAGGCATA TGAGCTGTTCGTGAACAAGATGATTTGGGGATTTATCAGGAGAATTCCTG CTCAAGAAACGATTCGTTTAGTGCCGGACTCTTTCAGCGAGGATCTGAAG AAGTTTATCAAGCTACCGGGTTCCCTTATGGATATGCTCGGCTTCTACCA CTTGAAGAAGGAGAAGGTCCTCGGGCCGGACGTCGCCGAAGCAGGGATCT TCGGGGCGAACAAGGTGATCAGGGGTGGGTCAAACGCGGAGGGATTTATC TTTGATCTCGCGAAATCCCTTCAAGAAGCCTCTAAACTGGGTAGGTTCAT CAACCTCCAGTCCGTCACTGCTCCGCTCACAGCGGGTCGCGAGTACAAGA GTCTTCTTGAAAATGTGGAGAACGGCAGAGAGGAGCTGATGTTGGAGAAG AAAGATCTATTCAAGTGGGCAGACAAAGGTGCGACGACATGGGCAACGAA GGCCCTCCTCTGTTTGGGAGCTTCCTTCATCCCGAGCATCCCTCTTGGTA GCATTAGGATCATGTCCCGCGACAGCAAGCTGAACGACAACACTAAAGGA GCCTACTTCTCGCACATGCAAGTTTTGGAATCCGTGCGACAGCAGTCCAT GCCCGACGGGGATACCAGAGACCTCGATGTGTTCAAGAAGATTTCGACCC ACTTCCACCCGACGACGGTGTTGGTGAGAAGAAATGTTGAAAAAGCAAAA CAACTGGACGGACAATTCGGGAACTCCAGCAAGGTTGAACAAGGAAAAAT GCCTTCGGATTTGTGGGGAGGTCAGAAGCTTGTTAAGCGGATGGTGGAAA AGCTCCTGGATGAGGCATATGAGCTGTTCGTGAACAAGGTGAAACCTGCA GAGCGCGCCTTGTCCATAAGGATCTTGGAGGAAGAGGGTGAAAAACATGC CGGAACTAGGGAGAACGAGGACCACATCAACACGGAGGAAGTCAAATCTG TAGCGCGGAGACTCATTGACGAGGAAAATGTCACTTGCGACGAAGCTAGT GAGTTGACTAAGATGGTGTTCTTGGTCGAGAACTTCACGTCGCCGCCCAT CAGGATGAAGAACAAAAGGGGGCTACAGGCGTGTCACACCTTCATCCACC CTACAGACGGTCTACTGAAAGACATCATCACCAACAGAATCAAAGATGAC GACGCTCTGGCGAGGACCGGGGTTTTGGTGTTGACACACAGGAAGCACGA GATGATCAAGGAGGTCTATGCTGTTATGGTCGTGCTCGGCCGCGCCGTGT TCCGTCTACATGGGTGCGTACTCGACAAGGGCATCTGCCCTCTAGACTCT TTGGGTCACGAACTTAACGACGGCAACCGGACTCAGCTTCTGAAAAGCGC CGGGATGTGGTTCCTCGGCCTCTCCGACTTTACTGAACACATCACCAGGA CCTTCCAGCTCACACTGCTCATCGACAAATGTATCAAACTCGGGCGCGCC CCCGAGCAGTGCCCAGTGGTGAAGCAAGCGTTAAGGGAGATGCATACGAC TATGAACATTGCTATGACCCACTACAACATCAGGAAGAACGAGAGAGTCG CGTGGGGAGTGAAACCTGCAGAGCGCGCCTTGTCCATAAGGATCTTGGAG GAAGAGGGTGAAAAACATGCCGGAACTAGGGAGAACGAGGACCACATCAA CACGGAGGAAGTCAAATCTGTAGCGCGGAGACTCATTGACGAGGAAAATG TCACTTGCGACGAAGCTAGTGAGTTGACTAAGATGGTGTTCTTGGTCGAG AACTTCACGTCGCCGCCCATCAGGATGAAGAACAAAAGGGGGCTACAGGC GTGTCACACCTTCATCCACCCTACAGACGGTCTACTGAAAGACATCATCA CCAACAGAATCAAAGATGACGACGCTCTGGCGAGGACCGGGGTTTTGGTG TTGACACACAGGAAGCACGAGATGATCAAGGAGGTCTATGCTGTTATGGT CGTGCTCGGCCGCGCCGTGTTCCGTCTACATGGGTGCGTACTCGACAAGG GCATCTGCCCTCTAGACTCTTTGGGTCACGAACTTAACGACGGCAACCGG ACTCAGCTTCTGAAAAGCGCCGGGATGTGGTTCCTCGGCCTCTCCGACTT TACTGAACACATCACCAGGACCTTCCAGCTCACACTGCTCATCGACAAAT GTATCAAACTCGGGCGCGCCCCCGAGCAGTGCCCAGTGGTGAAGCAAGCG TTAAGGGAGATGCATACGACTATGAACATTGCTATGACCCACTACAACAT CAGGAAGAACGAGAGAGTCGCGTGGGGA back to top