mRNA_L-elsbetiae_contig5515.13800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5515.13800.1
Unique NamemRNA_L-elsbetiae_contig5515.13800.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.190e-52
Identity = 129/249 (51.81%), Postives = 142/249 (57.03%), Query Frame = 1 
Query:    1 YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWGFQSLAIDRGCASSLKVACEQQDSTST-----------GTAVETPATGNH-HRGSRPAEDDLGRRSGAVGSSTDGSSQQ-------LHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGNSWKR-RSSWGSYFKSADTATSGHGHDHGETVA------GGGDDNSAQSTRGRNVGGSRFATVLVIVGTFSQVLWLVSSLV 669
            +L   P  AL+ FSC DCSVG ALSA KQQCPP + FCAAVSRPR     +QS ++DRGCASSL VACEQ +   +           G +  TPA G+H HR S       G  S     S+DG SQ        L CCSTD+CNG EDAR EG RRS EH R LMEG   K  RSS  S       A  G G   G   A       G DDNSA   RG  VGGSRFATVLVIVGTFSQVLWLV  L+
Sbjct:   68 HLGTVPVLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGHRESDGQNFLPGNSSSRSSRSSDGGSQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSA---RGGGVGGSRFATVLVIVGTFSQVLWLVGRLI 313
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BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 9.520e-50
Identity = 125/252 (49.60%), Postives = 138/252 (54.76%), Query Frame = 1 
Query:    1 YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWGFQSLAIDRGCASSLKVACEQQD-----------STSTGTAVETPATGNH-HRGSRPAEDDLGRRSGAVGSSTDGSS----------QQLHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGNSWKRRS-SWGSYFKSADTATSGHGHDHG------ETVAGGGDDNSAQSTRGRNVGGSRFATVLVIVGTFSQVLWLVSSLV 669
            +L   P  AL+CFSC DCSVG ALSA KQQCPP + FCAAVSRPR     +QS ++DRGCASSL VACEQ +           +   G    TPA G+H HR S    D    R G+                   Q L CCSTD CNG EDAR EG RRSEEH R LMEG   K+   S GS          G G   G      E +  G DDNSA   RG   GGSRFATVLVIVGTFSQVLWLV  L+
Sbjct:   26 HLRTVPVLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEEAGGTATTPAVGDHGHRES----DGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSA---RGGCEGGSRFATVLVIVGTFSQVLWLVGRLI 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS55_9PHAE2.190e-5251.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTZ0_ECTSI9.520e-5049.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5515contigL-elsbetiae_contig5515:9193..11142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003820.1
Exons2
Model size675
Cds size675
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.8683622-CDS-L-elsbetiae_contig5515:9192..97471622816580.8683622-CDS-L-elsbetiae_contig5515:9192..9747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 9193..9747 -
1691683662.0262358-CDS-L-elsbetiae_contig5515:9192..97471691683662.0262358-CDS-L-elsbetiae_contig5515:9192..9747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 9193..9747 -
1622816580.879758-CDS-L-elsbetiae_contig5515:11022..111421622816580.879758-CDS-L-elsbetiae_contig5515:11022..11142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 11023..11142 -
1691683662.0368214-CDS-L-elsbetiae_contig5515:11022..111421691683662.0368214-CDS-L-elsbetiae_contig5515:11022..11142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 11023..11142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5515.13800.1prot_L-elsbetiae_contig5515.13800.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5515 9193..11142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5515.13800.1

>prot_L-elsbetiae_contig5515.13800.1 ID=prot_L-elsbetiae_contig5515.13800.1|Name=mRNA_L-elsbetiae_contig5515.13800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWG
FQSLAIDRGCASSLKVACEQQDSTSTGTAVETPATGNHHRGSRPAEDDLG
RRSGAVGSSTDGSSQQLHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGN
SWKRRSSWGSYFKSADTATSGHGHDHGETVAGGGDDNSAQSTRGRNVGGS
RFATVLVIVGTFSQVLWLVSSLVY*
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mRNA from alignment at L-elsbetiae_contig5515:9193..11142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5515.13800.1 ID=mRNA_L-elsbetiae_contig5515.13800.1|Name=mRNA_L-elsbetiae_contig5515.13800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig5515:9193..11142- (Laminarionema elsbetiae ELsaHSoW15)
TACCTGACAGCAGGTCCGGCGTCAGCTCTAAAATGCTTCTCGTGCGACGA
CTGTTCAGTAGGAGTGGCTCTCTCTGCACACAAGCAGCAGTGCCCTCCGG
AAGATATCTTCTGCGCGGCGGTGAGAAAACCAAAAGTTAAAAAAACGGTA
GGCGTTACCAATATGTAGTACAAAGTTATTGATGTCCCAAGGGTCTCCCA
GGAGAAAAATTCAGGACACGTAGCCCCCCCCCGCCCCCCCCCCGCGGGAC
CCAAAATTTCGATTTTTGTCTATGTAGGAATTAGGATAGGGGGACCCGTT
TGGGGTTGTTCAACTCCCACCCCCCACCACGCCCGCTGGCATCTGCGGGC
TCTCCACTAGAAATTTATTGGCTACAGTATACCCGCCCCCCCCTTTCCAG
CGACTCGAAATTTCGATTTTGGGGCGTACGTGTCCTGAATTTTTCTCCTG
GGAGACCCCACTTGTTTCTTTAGAGGGGAATGTTGCTGAACCTACATGCT
GATGTTGCTGTTGTGTGTGTGTTGTCTTCACATTTAAAACCGTTCCGATC
TCTCTATCCAGTATACCTCCATGAGTCCGTTACTACTCCAACACTGATGC
GGTCGATTCCCGTGGTCACAGGATAGCTTACCTAAAAAGGGTATAGACTA
CTGAAAAAATGAAAGGAAATAAAACGGACCCGAAGAGTCCACAAAGCACA
AAAACAAAAGATCAAGACACAGATAGTGGCGCCCTCCGCTCCCCTCTACA
CGCTATGTGGGGTGAAAAAAAAAGTGGACAAGCCAATATCGCCAACCGCG
GGTATATACGCCCCCTGGTTTTATCTTGGTACCCCAACAATGCCGGGGTG
TTCCGCTCCGGGTTCTCGCCGGCCAGGCCCCTCCAGTTTATACTTAATAC
ATGCAGTGTAGGTTTAGAAACAATAAATCCACGTCCGGCGGGTAAGCTGT
CGATTTTGGTGCCCACCAAAGAGAGATGTTATTTTTCACTTCCTTCTGAA
ATTTGTTCTTGTAGAAGTATCAGCTCAATGTCTTGCCTCCAAGTTTACTG
ATCCTAACTTTTGTCAATGCACGTGATTGTTGTCTTGAACCCGGAATATG
CAGCGGTAGAAAAGGTTTCGTCATCGACCAAGAAGATTAAAGGCTATTTA
TTTACTACAATTATCTTCGTGATTTCTTCCTCGCCAACAAGCAAGCCACA
AGAGAGCGCACGTACCTTTGTTGTCCCGAGAATGGGTGAAAGACTCACGT
TGCATTTCCCTTCGTTTTTCTATGCATGGCTGGCCACCATGTTTGAGAGA
AAAGTTGCGATACAGAGAGAATCCTGGTAAATGCACACGGTCTCTTCCTC
ATCCAAGACTCGAATAATGACCCACACCTTGACAATGACGACCAGGTTTC
TCGGCCGCGGATTGGTCGATGGGGCTTCCAGTCCTTAGCCATTGATCGAG
GCTGCGCCTCGTCGCTAAAGGTGGCGTGCGAGCAGCAGGATTCCACATCA
ACAGGAACAGCGGTAGAAACGCCCGCCACTGGCAACCATCATCGTGGTAG
TCGTCCAGCAGAAGACGACCTTGGCAGAAGGAGCGGAGCTGTCGGTAGCT
CGACGGATGGTTCTTCGCAACAATTGCACTGCTGCTCGACAGACCTGTGC
AACGGCTCAGAGGATGCACGGTCAGAGGGGTATCGCCGATCGGAAGAACA
CCGGCGAATGCTGATGGAGGGTAACTCTTGGAAGAGAAGAAGCTCTTGGG
GTTCTTATTTTAAAAGTGCAGATACGGCTACTAGTGGTCACGGTCACGAT
CACGGCGAAACAGTTGCGGGTGGCGGGGACGATAACTCGGCCCAGTCGAC
CCGAGGGAGGAACGTTGGGGGGTCGCGATTTGCGACGGTGCTTGTAATTG
TTGGCACATTTTCGCAGGTGTTGTGGTTGGTGAGCAGCCTGGTATATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5515:9193..11142-

>mRNA_L-elsbetiae_contig5515.13800.1 ID=mRNA_L-elsbetiae_contig5515.13800.1|Name=mRNA_L-elsbetiae_contig5515.13800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig5515:9193..11142- (Laminarionema elsbetiae ELsaHSoW15)
TACCTGACAGCAGGTCCGGCGTCAGCTCTAAAATGCTTCTCGTGCGACGA
CTGTTCAGTAGGAGTGGCTCTCTCTGCACACAAGCAGCAGTGCCCTCCGG
AAGATATCTTCTGCGCGGCGTACCTGACAGCAGGTCCGGCGTCAGCTCTA
AAATGCTTCTCGTGCGACGACTGTTCAGTAGGAGTGGCTCTCTCTGCACA
CAAGCAGCAGTGCCCTCCGGAAGATATCTTCTGCGCGGCGGTTTCTCGGC
CGCGGATTGGTCGATGGGGCTTCCAGTCCTTAGCCATTGATCGAGGCTGC
GCCTCGTCGCTAAAGGTGGCGTGCGAGCAGCAGGATTCCACATCAACAGG
AACAGCGGTAGAAACGCCCGCCACTGGCAACCATCATCGTGGTAGTCGTC
CAGCAGAAGACGACCTTGGCAGAAGGAGCGGAGCTGTCGGTAGCTCGACG
GATGGTTCTTCGCAACAATTGCACTGCTGCTCGACAGACCTGTGCAACGG
CTCAGAGGATGCACGGTCAGAGGGGTATCGCCGATCGGAAGAACACCGGC
GAATGCTGATGGAGGGTAACTCTTGGAAGAGAAGAAGCTCTTGGGGTTCT
TATTTTAAAAGTGCAGATACGGCTACTAGTGGTCACGGTCACGATCACGG
CGAAACAGTTGCGGGTGGCGGGGACGATAACTCGGCCCAGTCGACCCGAG
GGAGGAACGTTGGGGGGTCGCGATTTGCGACGGTGCTTGTAATTGTTGGC
ACATTTTCGCAGGTGTTGTGGTTGGTGAGCAGCCTGGTATATTGAGTTTC
TCGGCCGCGGATTGGTCGATGGGGCTTCCAGTCCTTAGCCATTGATCGAG
GCTGCGCCTCGTCGCTAAAGGTGGCGTGCGAGCAGCAGGATTCCACATCA
ACAGGAACAGCGGTAGAAACGCCCGCCACTGGCAACCATCATCGTGGTAG
TCGTCCAGCAGAAGACGACCTTGGCAGAAGGAGCGGAGCTGTCGGTAGCT
CGACGGATGGTTCTTCGCAACAATTGCACTGCTGCTCGACAGACCTGTGC
AACGGCTCAGAGGATGCACGGTCAGAGGGGTATCGCCGATCGGAAGAACA
CCGGCGAATGCTGATGGAGGGTAACTCTTGGAAGAGAAGAAGCTCTTGGG
GTTCTTATTTTAAAAGTGCAGATACGGCTACTAGTGGTCACGGTCACGAT
CACGGCGAAACAGTTGCGGGTGGCGGGGACGATAACTCGGCCCAGTCGAC
CCGAGGGAGGAACGTTGGGGGGTCGCGATTTGCGACGGTGCTTGTAATTG
TTGGCACATTTTCGCAGGTGTTGTGGTTGGTGAGCAGCCTGGTATATTGA
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