mRNA_L-elsbetiae_contig5512.13794.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5512.13794.1
Unique NamemRNA_L-elsbetiae_contig5512.13794.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5512.13794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5512contigL-elsbetiae_contig5512:10809..11500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size694
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.3231966-CDS-L-elsbetiae_contig5512:10808..112221622816580.3231966-CDS-L-elsbetiae_contig5512:10808..11222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5512 10809..11222 +
1691683661.6452713-CDS-L-elsbetiae_contig5512:10808..112221691683661.6452713-CDS-L-elsbetiae_contig5512:10808..11222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5512 10809..11222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.3345344-UTR-L-elsbetiae_contig5512:11222..115001622816580.3345344-UTR-L-elsbetiae_contig5512:11222..11500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5512 11223..11500 +
1691683661.656709-UTR-L-elsbetiae_contig5512:11222..115001691683661.656709-UTR-L-elsbetiae_contig5512:11222..11500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5512 11223..11500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5512.13794.1prot_L-elsbetiae_contig5512.13794.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5512 10809..11222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5512.13794.1

>prot_L-elsbetiae_contig5512.13794.1 ID=prot_L-elsbetiae_contig5512.13794.1|Name=mRNA_L-elsbetiae_contig5512.13794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
LSTSPLLIPSFLLGLSGKRASGPAGVTRTNITTWLHFCAETGPHQLTIHC
SRLRLNHGSDQVSLSCRGHEEFTINHTILSLTKMQTLDSTRIDQSTTSHG
TRTRNPCCCKELQRHYPSEQQADRTPHPASQYKTPNL*
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mRNA from alignment at L-elsbetiae_contig5512:10809..11500+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5512.13794.1 ID=mRNA_L-elsbetiae_contig5512.13794.1|Name=mRNA_L-elsbetiae_contig5512.13794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=692bp|location=Sequence derived from alignment at L-elsbetiae_contig5512:10809..11500+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTACATCTCCTCTACTGATTCCTTCCTTTCTTCTCGGACTCTCTGG
CAAACGGGCGAGTGGACCCGCCGGGGTCACACGCACCAATATAACAACTT
GGCTACACTTCTGCGCTGAGACTGGACCTCACCAACTGACAATCCACTGT
TCACGGCTACGTCTCAACCACGGGAGCGACCAGGTTTCGCTGTCATGCCG
TGGTCATGAGGAATTCACCATAAATCATACCATACTAAGTCTGACAAAGA
TGCAAACCTTGGATTCTACGCGAATAGACCAGTCGACAACATCTCACGGC
ACTCGCACACGAAACCCATGTTGCTGTAAGGAGTTACAGAGGCACTATCC
GTCAGAGCAGCAAGCAGACAGGACGCCACATCCAGCCTCTCAATATAAAA
CACCAAACCTGTAAATGTAAGGTGGGGCGCTGCGGTCAACACAGAATGAC
CCACAATACTTGTCAATTGTGTAGATAGGTAAAATCCGCTGTCATAATCC
AAACAAAAATGCATTACATTAACTGGATATTTCGACTAACCACGAGATGG
CTGGTGGTAAGCAAGCAACAGATGAGTGAGAGACCTCCCGCCGATCGCCT
AAACCCTTTCGTGGTTTTCTTGGGGATCTTTGCAACTGCCCCCAAGCCCC
ATGCTAGTCTATATTCCTGCACCCTCTCCTACTACATCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5512:10809..11500+

>mRNA_L-elsbetiae_contig5512.13794.1 ID=mRNA_L-elsbetiae_contig5512.13794.1|Name=mRNA_L-elsbetiae_contig5512.13794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5512:10809..11500+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTACATCTCCTCTACTGATTCCTTCCTTTCTTCTCGGACTCTCTGG
CAAACGGGCGAGTGGACCCGCCGGGGTCACACGCACCAATATAACAACTT
GGCTACACTTCTGCGCTGAGACTGGACCTCACCAACTGACAATCCACTGT
TCACGGCTACGTCTCAACCACGGGAGCGACCAGGTTTCGCTGTCATGCCG
TGGTCATGAGGAATTCACCATAAATCATACCATACTAAGTCTGACAAAGA
TGCAAACCTTGGATTCTACGCGAATAGACCAGTCGACAACATCTCACGGC
ACTCGCACACGAAACCCATGTTGCTGTAAGGAGTTACAGAGGCACTATCC
GTCAGAGCAGCAAGCAGACAGGACGCCACATCCAGCCTCTCAATATAAAA
CACCAAACCTGTAACTCTCTACATCTCCTCTACTGATTCCTTCCTTTCTT
CTCGGACTCTCTGGCAAACGGGCGAGTGGACCCGCCGGGGTCACACGCAC
CAATATAACAACTTGGCTACACTTCTGCGCTGAGACTGGACCTCACCAAC
TGACAATCCACTGTTCACGGCTACGTCTCAACCACGGGAGCGACCAGGTT
TCGCTGTCATGCCGTGGTCATGAGGAATTCACCATAAATCATACCATACT
AAGTCTGACAAAGATGCAAACCTTGGATTCTACGCGAATAGACCAGTCGA
CAACATCTCACGGCACTCGCACACGAAACCCATGTTGCTGTAAGGAGTTA
CAGAGGCACTATCCGTCAGAGCAGCAAGCAGACAGGACGCCACATCCAGC
CTCTCAATATAAAACACCAAACCTGTAA
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