mRNA_L-elsbetiae_contig551.13789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig551.13789.1
Unique NamemRNA_L-elsbetiae_contig551.13789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.470e-17
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:   43 QGLEKLERAKGLLLEG-GARVNIGDVNKLLKQSRAAFFEEHSRSLSEGEGAXXXXXXXXXXXXXXXEAVAEPWRGAPLAATVCITSELAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLEGEGK 420
            QGL+++E+A+ LL    G    +  V KLL QS+AA+ +  S   + G                    VA   +GAP AA +C+ SE  FPEAIALVRWFCS+ VASLCEVA+  E EA++LE +GK
Sbjct:   45 QGLQQIEQARSLLEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAG---------------GENTDVAAISQGAPQAALICVASEAVFPEAIALVRWFCSKHVASLCEVAQAMEIEAKRLEKQGK 156
[Close]
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.530e-15
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:   43 QGLEKLERAKGLLLEG-GARVNIGDVNKLLKQSRAAFFEEHSRSLSEGEGAXXXXXXXXXXXXXXXEAVAEPWRGAPLAATVCITSELAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLE 408
            QGL+++E+A+ L+    G    +  V KLL QS+AA+ +  S   + GE                  A+++   GAP AA +C+ SE  FP+AIALVRWFCS+ VASLCEV++  E EA++LE
Sbjct:   47 QGLQQIEQARSLVEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAGE------------ENTDVSAISQ---GAPQAALICVASEAVFPKAIALVRWFCSKHVASLCEVSQAMEIEAKRLE 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR3_ECTSI4.470e-1744.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE3.530e-1541.46EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig551contigL-elsbetiae_contig551:20932..22556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig551.13789.1prot_L-elsbetiae_contig551.13789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig551 20932..22556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.9030964-CDS-L-elsbetiae_contig551:20931..210461622816579.9030964-CDS-L-elsbetiae_contig551:20931..21046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20932..21046 -
1691683661.3337553-CDS-L-elsbetiae_contig551:20931..210461691683661.3337553-CDS-L-elsbetiae_contig551:20931..21046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20932..21046 -
1622816579.9140587-CDS-L-elsbetiae_contig551:21408..216261622816579.9140587-CDS-L-elsbetiae_contig551:21408..21626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 21409..21626 -
1691683661.3480692-CDS-L-elsbetiae_contig551:21408..216261691683661.3480692-CDS-L-elsbetiae_contig551:21408..21626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 21409..21626 -
1622816579.9329348-CDS-L-elsbetiae_contig551:22442..225561622816579.9329348-CDS-L-elsbetiae_contig551:22442..22556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 22443..22556 -
1691683661.357785-CDS-L-elsbetiae_contig551:22442..225561691683661.357785-CDS-L-elsbetiae_contig551:22442..22556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 22443..22556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig551.13789.1

>prot_L-elsbetiae_contig551.13789.1 ID=prot_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
VGGRLGGSQRQPSDQGLEKLERAKGLLLEGGARVNIGDVNKLLKQSRAAF
FEEHSRSLSEGEGAAGAAAAAVAAAGGGGEAVAEPWRGAPLAATVCITSE
LAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLEGEGKSRRKSRVGS
back to top

mRNA from alignment at L-elsbetiae_contig551:20932..22556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig551.13789.1 ID=mRNA_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1625bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20932..22556- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCGTCCGACCAGGGCCT
GGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGAAGGGGGCGCCAGAG
TCAACATCGGCGACGTAAGTTTTTGCGCATTTTTTCTTCCTTGCAACAGA
GCTTACGCGGTAACGACCCGAATCTTCATGTTCGCACAACAGTGTCCGAG
GTGCCCAGGTGCCATGAACAGTAATAGTACCGGCCGCTTTTTCTGTACGA
TGTTTGGCGGAAAACATGCGCACGCTTTTGGTATACATACGATTGCCGAT
AGCAGAACAAGCCCCTCCATGGGCGCGCGGGCAGACACGGCGGGCATGCT
TGCTCGCTTTGCGCCTCTGCCGAGTGCGCCGGCGTGAACGCACGCTTGGG
CAAACTCCTGGAACGCGCGAAAAAAACAATAAAACACTCGAGGCTAGTTT
GGTTGCAATGGTTTTGTCTTGCGCTTCGTGGGGTAGAGATTTATGCCAAA
AGTCTGCTCGCTTCCCTCTCGCCGCCGCGGCGGCTGCCACACCCACCCAC
TACCCTCTCTACCCTCTCTCCGAATGAATGGACATCGTTCAGCGCTGTCC
TGGTTGAAATTGAGCTCTGAAGATACAAGTTAATAGTGTGACACATCAAG
ATCTGCACCATCGCTGTAAATATCAACCCGTCGCGATATCTCTTGACGAA
AATGCATATTTTGATACATAAAATGTGTGTGTAGGTGATATTAATACCTA
TCTCCCTCTACATGTTTTAACTGCATTTGTTTCGACCTTGGTCCCGATAC
AGATAGCAACCCTTTATCGTCGTGTTCTCTTTTGAATCCATACCAAGTTT
CAGCGAGGCACATGCCCCCCCGTGCGCGCGCCTTCCCTATGCGGTCCATG
CCGTCATTCCGGATCTCCTCCACCTTGAAGGTGAATAAGCTGCTGAAGCA
GTCGAGGGCGGCCTTTTTCGAGGAACACAGCAGGTCTCTATCTGAAGGAG
AAGGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGCGGCAGCAGGAGGGGGG
GGAGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCCCGCTCGCCGCCACCGT
CTGCATCACTTCGGAGCTGGCCTTCCCTGAAGCGATAGCGCTGGTCAGGT
AAATAAAAAAAACAGCGTTGGGTGCGGTAGATCCTTGAGGATGGTCTATG
GATCACTCTGCGGTCATTCAGGTATCGCACGCAGGAGGAGCCCAGATGGC
TATACGTCGGTAGCTGTTTAAAGGTGGAAACCCACGGCAGACAGCGATTG
ACAGATGCTGGTATTTATGCGTCTGAGTTCAGCAGACAGCATATTCGGCG
CGCAAAGCATCGAAAGAAAGCTACTCTTACCTCACACAAGCGATGCTTGG
TCAATCAAGACAGGCCACGATGATGTATGCAGCGATGTTATGGTGTGAAC
CGAAGCGCGTCCGTATTTAACGCGCTCGGCCGGGAACGTGCCTATGTATC
CCTCCTGCAGGTGGTTCTGCTCGCAGTTTGTGGCGAGCCTTTGCGAGGTG
GCCAGGGTAGCCGAGGGCGAGGCTAGAAAGCTGGAAGGGGAGGGCAAAAG
CAGACGAAAATCTCGCGTCGGCAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig551:20932..22556-

>mRNA_L-elsbetiae_contig551.13789.1 ID=mRNA_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20932..22556- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCGTCCGACCAGGGCCT
GGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGAAGGGGGCGCCAGAG
TCAACATCGGCGACGTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCG
TCCGACCAGGGCCTGGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGA
AGGGGGCGCCAGAGTCAACATCGGCGACGTGAATAAGCTGCTGAAGCAGT
CGAGGGCGGCCTTTTTCGAGGAACACAGCAGGTCTCTATCTGAAGGAGAA
GGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGCGGCAGCAGGAGGGGGGGG
AGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCCCGCTCGCCGCCACCGTCT
GCATCACTTCGGAGCTGGCCTTCCCTGAAGCGATAGCGCTGGTCAGGTGA
ATAAGCTGCTGAAGCAGTCGAGGGCGGCCTTTTTCGAGGAACACAGCAGG
TCTCTATCTGAAGGAGAAGGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGC
GGCAGCAGGAGGGGGGGGAGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCC
CGCTCGCCGCCACCGTCTGCATCACTTCGGAGCTGGCCTTCCCTGAAGCG
ATAGCGCTGGTCAGGTGGTTCTGCTCGCAGTTTGTGGCGAGCCTTTGCGA
GGTGGCCAGGGTAGCCGAGGGCGAGGCTAGAAAGCTGGAAGGGGAGGGCA
AAAGCAGACGAAAATCTCGCGTCGGCAGCGTGGTTCTGCTCGCAGTTTGT
GGCGAGCCTTTGCGAGGTGGCCAGGGTAGCCGAGGGCGAGGCTAGAAAGC
TGGAAGGGGAGGGCAAAAGCAGACGAAAATCTCGCGTCGGCAGC
back to top