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Homology
BLAST of mRNA_L-elsbetiae_contig5502.13777.1 vs. uniprot
Match: D7FWC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC0_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 1.850e-11 Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query: 455 QRHSGRSAQRMLQDVAGTSDLLKGCIRAREDLGAAKRTILRAREDEARKPTRQTRP--MMVLHSGSWEEAGGASD 673
QR G + R+LQ+VAG+SDLLK CIRARE LG AK ILR R DEARK +R TR ++LH GSWE+ G D
Sbjct: 83 QRQVGDNMHRLLQEVAGSSDLLKDCIRAREALGTAKLRILRDR-DEARKVSRITRSPSAILLHGGSWEDCGWDDD 156
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 716 |
| Cds size | 390 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816578.5875645-CDS-L-elsbetiae_contig5502:3800..4190 | 1622816578.5875645-CDS-L-elsbetiae_contig5502:3800..4190 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5502 3801..4190 - |
| 1691683660.6113918-CDS-L-elsbetiae_contig5502:3800..4190 | 1691683660.6113918-CDS-L-elsbetiae_contig5502:3800..4190 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5502 3801..4190 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816578.600173-UTR-L-elsbetiae_contig5502:4190..4395 | 1622816578.600173-UTR-L-elsbetiae_contig5502:4190..4395 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5502 4191..4395 - |
| 1691683660.6220627-UTR-L-elsbetiae_contig5502:4190..4395 | 1691683660.6220627-UTR-L-elsbetiae_contig5502:4190..4395 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5502 4191..4395 - |
| 1622816578.6137433-UTR-L-elsbetiae_contig5502:5043..5163 | 1622816578.6137433-UTR-L-elsbetiae_contig5502:5043..5163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5502 5044..5163 - |
| 1691683660.6315029-UTR-L-elsbetiae_contig5502:5043..5163 | 1691683660.6315029-UTR-L-elsbetiae_contig5502:5043..5163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5502 5044..5163 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5502.13777.1 >prot_L-elsbetiae_contig5502.13777.1 ID=prot_L-elsbetiae_contig5502.13777.1|Name=mRNA_L-elsbetiae_contig5502.13777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MASSPETATISNSTPQPALASVFPINSASDRQQQFGKPSSPFWQRHSGRS
AQRMLQDVAGTSDLLKGCIRAREDLGAAKRTILRAREDEARKPTRQTRPM
MVLHSGSWEEAGGASDWRDWPTVDTVGARP back to topmRNA from alignment at L-elsbetiae_contig5502:3801..5163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5502.13777.1 ID=mRNA_L-elsbetiae_contig5502.13777.1|Name=mRNA_L-elsbetiae_contig5502.13777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1363bp|location=Sequence derived from alignment at L-elsbetiae_contig5502:3801..5163- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGCCGCACCACAACAGTCCCCACGTCTACACACGCTTGCTGATTGGA
TTTTCTGGCCTCTAGGCTGAGGGTCTTACAAGTACCGCGTGAACGAGTGC
TCACGTATCAGGAAATAGAGGTGGGTGCATCTTTTCGAAAACTTGAAATT
ACCATGGAAATTACGAGAGGAGGCGGGAGAGAGGAGCGGTCCAACGTACA
CGGCAGTACGGCACCACCGCTGCGGATATATCGGATGTGGTTTATTGTAC
AGTAGTTCTTCTAGCGTTGTCAGGGTGATAATTTTTTATCCGCTGATGAT
CATGCAGGCCATTTCGTGTGAGCTAATATGAATATCTAAGTGAAGAGCTT
CCAAGGATCAATTGCTCGGTTTCCTAGCACATGTTTCGGTGTGTGTGAGC
TGGTGTGTGCCAGTGACCCCTTACAGGCACACCCGGCAAAATTGGGTATC
TCTTGTGTAAAATCAATTGCAACAGATATGGCCATAAGTTTGCACTTGTG
ATCTTCTACGCATGGTCATATATAGACTATATGCACTTGTAATAACTTGC
ACTACTGTGTCGTCGTCTACGCAGTAGTGTCGTAGTCTACACAGCAGATC
TAGACATCTAGATAAACACCCGCAGCCCAAAGCAGCCCTCAGCCCTCTGC
TGTTTTATGTTCGAATTTCAAGACGTAAACCACGCTGCATTCATCCCCTT
GCTTGATGCTATTTTTGTTCGTGTGCACCCTCCCCGGTTACCTACGGGTG
CCGCTGTGGCCTCGCCAGCCAGCCAGCCACACCACAAAACACCTCAGCAC
ACCACCAGTCGTGGGAGGTCAGAACAACCGCTCGACCTACCCACGTGGGC
GGACGAGGCAAGCAACGTCGCGCAGAGAGTCGCCTGGCCAGATCAACAAT
CCAAAAGCCGGCGGCCGCAGTATCAACAGCAGCAGCAGCAGCAGCGGCGG
CGGCGGCGGCGGCAGGAACAACCATGGCATCGTCTCCGGAGACCGCTACG
ATTTCGAACTCAACGCCCCAGCCAGCATTAGCATCCGTTTTCCCTATTAA
TAGTGCCAGCGATCGCCAGCAGCAATTCGGTAAGCCAAGCTCTCCGTTTT
GGCAGCGGCACAGCGGCCGCTCCGCGCAACGCATGCTCCAAGACGTAGCG
GGCACAAGCGACCTGCTGAAGGGCTGCATACGGGCCCGAGAGGACTTAGG
AGCCGCCAAGCGTACAATCTTGCGCGCTCGAGAAGACGAAGCCCGCAAGC
CGACCCGGCAAACACGCCCGATGATGGTGCTACATAGCGGCAGCTGGGAG
GAGGCTGGCGGCGCTTCTGATTGGCGCGATTGGCCCACGGTGGACACCGT
GGGAGCGAGGCCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5502:3801..5163- >mRNA_L-elsbetiae_contig5502.13777.1 ID=mRNA_L-elsbetiae_contig5502.13777.1|Name=mRNA_L-elsbetiae_contig5502.13777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig5502:3801..5163- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATCGTCTCCGGAGACCGCTACGATTTCGAACTCAACGCCCCAGCC
AGCATTAGCATCCGTTTTCCCTATTAATAGTGCCAGCGATCGCCAGCAGC
AATTCGGTAAGCCAAGCTCTCCGTTTTGGCAGCGGCACAGCGGCCGCTCC
GCGCAACGCATGCTCCAAGACGTAGCGGGCACAAGCGACCTGCTGAAGGG
CTGCATACGGGCCCGAGAGGACTTAGGAGCCGCCAAGCGTACAATCTTGC
GCGCTCGAGAAGACGAAGCCCGCAAGCCGACCCGGCAAACACGCCCGATG
ATGGTGCTACATAGCGGCAGCTGGGAGGAGGCTGGCGGCGCTTCTGATTG
GCGCGATTGGCCCACGGTGGACACCGTGGGAGCGAGGCCGATGGCATCGT
CTCCGGAGACCGCTACGATTTCGAACTCAACGCCCCAGCCAGCATTAGCA
TCCGTTTTCCCTATTAATAGTGCCAGCGATCGCCAGCAGCAATTCGGTAA
GCCAAGCTCTCCGTTTTGGCAGCGGCACAGCGGCCGCTCCGCGCAACGCA
TGCTCCAAGACGTAGCGGGCACAAGCGACCTGCTGAAGGGCTGCATACGG
GCCCGAGAGGACTTAGGAGCCGCCAAGCGTACAATCTTGCGCGCTCGAGA
AGACGAAGCCCGCAAGCCGACCCGGCAAACACGCCCGATGATGGTGCTAC
ATAGCGGCAGCTGGGAGGAGGCTGGCGGCGCTTCTGATTGGCGCGATTGG
CCCACGGTGGACACCGTGGGAGCGAGGCCG back to top
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