mRNA_L-elsbetiae_contig550.13774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE) HSP 1 Score: 937 bits (2423), Expect = 8.340e-309 Identity = 586/970 (60.41%), Postives = 673/970 (69.38%), Query Frame = 3 Query: 30 VFLRAKFPGSRGSLALVLASHRPHAEASLGRLLVKSSPRLLHTARPARTSSRPAQEEHHAAG-GADAKLAANAAETTAERLQEELFRALCQPRPSSPSLVALVRGIVAAGAAPSLTAVQALADHLAAAKDAKSLKALLSLLKGSKPGLAVGGAGSETTEHATGILFSRLVRAHCRRQDVTSALAEVAEMEAAGGEPSPEMFSYLLDACAIARPPLLREMEAVWARVE-------------------------------EQGLTTTLDVGQDLFVARMAAHANGAGYAPPGQGQEGDWQQALLEKVDGTWGEMLKAPACADVAS-------EEGELVTAESWVSRAAALALCARGSGAGSDAAMSRSLEALQSYQRCGGRFSGSEDVFALAEVVRGLARCGRQDEVSRAADILADLRQAARQAEDDADRANASTTNTAIDKAKARAAMTRAARVPEELLRALGARGRGLDSACGRPYGLSLLRVVEDVAAEAFACGERSLEGVDSRLTATLQAVLTVSRLLDRGDADVINKASRAALDCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAAGARRGWPGPNLAAMSLLTLLHVSQDRLEGIPAALDVLQQMHDRGLAPPASLAAQLQTVFKRHGTVRQKRRASFLLARALEGFGPPPDGD-------TAPDDAVDAPLVTGVGDAIRGMVESSTTRGAGEWDARQTLVAADKPANGGPPGASDGDGAGGRSTGDAPAVASLSAEASYQLLRQRIRDESIRGAASAGVRSVEQACAAAAASAGAEI----GQKEDREGQRHPSTMASTQELEPAESSHGDVLWRATVLAEKGRAHAALAALQLVDGRKRGTRVDVPYKVYALVFRALANGYSARGWEELELAAAPTEALKWLLRGMARQGYSPNATILNFGLESFAVAARTRKVQEGEEEVRARVCTEAMDFMEGMRDGWNGLIPPVVPNLVSFNIIIKV 2789 +FLR GS+ LAL + S +A L RLL +SPR +H+A PARTS + A+G A A ++ E +LQEE+FR LC+PRPSSPSLVALVRG+VAAGA PS+ AV+ALADH + AKDA+S+KA+LSLLK SKPGL T GI+FSRLVRAHCRRQDVTSALAEV EMEA G E E++S LL CAIARPPLL E+EAVW ++ E+GLTT V QDLFV M HAN AGYA G Q+ D QQ LEKVD W ML+A A AS +EG LVT ESW++RAAALALC R SG S AAMSRS++A +SY+R GG F+ ED+F LAEVVRGLARCGRQ EV IL+DLRQ A +AE +A ASTT TA+DKAK R+A TRAA V +ELLRALGARGRGLDS R YGLSLLRVV+DVAA+A ACGERS VDSRLTATLQAVLT SR LDR DA INKA R ALD AA G RR W GPNLAA+SLL LLHVSQ+R EGIPAA+DVLQ+MHDRGL PPA+LAAQL+TVFKRHGTVRQKRR+SFLLARAL+GFGPP D + TA + DA V VG AIRGMV+SSTTRG GEWDA++ L AA+K A+GG G + G+ STGD+ A SAE SYQLLRQR R+ S+ G AS GVR+VEQ+CAAAA +A AE+ G+ DR RHPS + A SH D+L R TVLAE+GR HAALAALQ VDGRKRGTRV VPY+VYAL+FRALANGYSA+G EEL LAAAP EAL+WLLRGMARQGYS T LNFGLE+FAVAA+T++V+EGEEEVRARVCTEAMDFMEGMRDGWNGL+PPV PN+VSFNII+KV Sbjct: 1645 LFLRRSLVGSKRELALAVCSRSQRGQAPLARLLAGASPRQVHSALPARTS---VPVDGGASGTAAGAARPEDSIEVATSQLQEEMFRVLCEPRPSSPSLVALVRGMVAAGAQPSIEAVEALADHFSEAKDARSIKAVLSLLKPSKPGL--------TAVDPIGIMFSRLVRAHCRRQDVTSALAEVVEMEATGREVDLEVYSDLLHGCAIARPPLLGEVEAVWTHIQVRAVPAHARVSQGALVRIATSLADHARSRYMERGLTTRGGVQQDLFVGLMTTHANSAGYALFGDNQQ-DQQQVPLEKVDEAWDGMLEALNVAASASTDPDRTVDEGGLVTPESWMARAAALALCVRDSGLVSGAAMSRSMDAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEA---ILSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAALVFDELLRALGARGRGLDSG-DRLYGLSLLRVVDDVAAQAHACGERSQGDVDSRLTATLQAVLTTSRFLDREDATSINKAIRTALDSAAAAIAAEVGGRHPVEDLQ----------GGSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNNDDGADGTAAEQEGDARRVGRVGGAIRGMVKSSTTRGVGEWDAQEPLGAAEKYASGG--GDTQGNDEASYSTGDS--AAQPSAEQSYQLLRQRRREASLNGNASVGVRNVEQSCAAAAVAAAAEVTKDAGRGLDR---RHPSQAPTP----GASESHRDILRRVTVLAERGRPHAALAALQAVDGRKRGTRVSVPYRVYALLFRALANGYSAQGCEELGLAAAPAEALQWLLRGMARQGYSAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKV 2577
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI) HSP 1 Score: 872 bits (2254), Expect = 3.340e-305 Identity = 535/882 (60.66%), Postives = 606/882 (68.71%), Query Frame = 3 Query: 342 IVAAGAAPSLTAVQALADHLAAAKDAKSLKALLSLLKGSKPGLAVGGAGSETTEHATGILFSRLVRAHCRRQDVTSALAEVAEMEAAGGEPSPEMFSYLLDACAIARPPLLREMEAVWARVEEQGLTTTLDVGQDLFVARMAAHANGAGYAPPGQGQEGDWQ--------------------------------------------QALLEKVDGTWGEMLKAPACADVAS-------EEGELVTAESWVSRAAALALCARGSGAGSDAAMSRSLEALQSYQRCGGRFSGSEDVFALAEVVRGLARCGRQDEVSRAADILADLRQAARQAEDDADRANASTTNTAIDKAKARAAMTRAARVPEELLRALGARGRGLDSACGRPYGLSLLRVVEDVAAEAFACGERSLEGVDSRLTATLQAVLTVSRLLDRGDADVINKASRAALDCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAAGARRGWPGPNLAAMSLLTLLHVSQDRLEGIPAALDVLQQMHDRGLAPPASLAAQLQTVFKRHGTVRQKRRASFLLARALEGFGPPPDGDTAPDDAV------DAPLVTGVGDAIRGMVESSTTRGAGEWDARQTLVAADKPANGGPPGASDGDGAGGRSTGDA------PAVASLSAEASYQLLRQRIRDESIRGAASAGVRSVEQACAAAAASAGA---EIGQKEDREGQRHPSTMASTQELEPAESSHGDVLWRATVLAEKGRAHAALAALQLVDGRKRGTRVDVPYKVYALVFRALANGYSARGWEELELAAAPTEALKWLLRGMARQGYSPNATILNFGLESFAVAARTRKVQEGEEEVRARVCTEAMDFMEGMRDGWNGLIPPVVPNLVSFNIIIKV 2789 +VAAGA PS+ A++ALADH + AKDA+S+KA+LSLLKGSKPGL T GI+FSRLVRAHCRRQDVTSALAEVAEMEA G E E++S LL CAIARPPLL EMEAVWA ++E+GLTT V QD+FV M HAN AGYAP G Q+ Q QA LEKVD W ML+A A AS +EG LVT ESW++RA++LALC R SG SD AMSRS+EA +SY+R GG F+ ED+F LAEVVRGLARCGRQ EV I +DLRQ A +AE +A ASTT TA+DKAK R+A TRAARV +ELLRALGARGRGLDS GRPYGLSLL VVEDVA +A ACG+RS VDSRLTATLQAVLT SR LDR DA INKA R ALD AA G RR W GPNLAA+SLL LLHVSQ+R EGIPAA+DVLQ+MHDRGL PPA+LAAQL+TVFKRHGTVRQKRR+SFLLARAL+GFGPP D + DD DA V GVG+AIRGMVESSTTRG EWDA++ L AA++ ANG GG + SAE SYQLLRQR+R+ S+ G ASAGVR+VEQ+CAAA A+A E G+ DR RHPS A TQ A SH D+L R TVLAE+GR HAALAALQ VDGRKRGTRV VPY+VYAL+FRALANGYSA+GWEEL LAAAP EAL+WLLRGMARQGY T LNFGLE+FAVAA+T++V+EGEEEVRARVCTEAMDFMEGMRDGWNGL+PPV PN+VSFNII+KV Sbjct: 1 MVAAGAQPSIEAIEALADHFSEAKDARSIKAVLSLLKGSKPGL--------TAVDPIGIMFSRLVRAHCRRQDVTSALAEVAEMEATGREVDVEVYSDLLHGCAIARPPLLVEMEAVWAHIQERGLTTRGGVQQDIFVGLMTTHANSAGYAPFGDNQQDQQQRTVLGACGVPHPLKGHGPPLSVPSAADKSNKFQHCSYSPRNSRTQAPLEKVDEAWDGMLEALNEAASASTDPDRTADEGGLVTPESWMARASSLALCVRDSGLISDDAMSRSMEAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEA---IFSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAARVFDELLRALGARGRGLDSG-GRPYGLSLLEVVEDVAGQAHACGDRSQGDVDSRLTATLQAVLTTSRFLDREDAASINKAIRTALDSAATAIASVEDLQ-----------------GRSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNDDGDDGTAAEQEGDARRVVGVGEAIRGMVESSTTRGVDEWDAQEPLAAAEESANGD----------GGTQVNEEGXXXXXXXAVRPSAEQSYQLLRQRLREASLNGNASAGVRNVEQSCAAAVAAAAELTKEAGRGPDR---RHPS-QAPTQ---GASESHRDILKRVTVLAERGRPHAALAALQAVDGRKRGTRVAVPYRVYALLFRALANGYSAQGWEELGLAAAPAEALQWLLRGMARQGYPAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKV 836 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig550.13774.1 >prot_L-elsbetiae_contig550.13774.1 ID=prot_L-elsbetiae_contig550.13774.1|Name=mRNA_L-elsbetiae_contig550.13774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=922bp MAVFLRAKFPGSRGSLALVLASHRPHAEASLGRLLVKSSPRLLHTARPARback to top mRNA from alignment at L-elsbetiae_contig550:29810..36384+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig550.13774.1 ID=mRNA_L-elsbetiae_contig550.13774.1|Name=mRNA_L-elsbetiae_contig550.13774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6575bp|location=Sequence derived from alignment at L-elsbetiae_contig550:29810..36384+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig550:29810..36384+ >mRNA_L-elsbetiae_contig550.13774.1 ID=mRNA_L-elsbetiae_contig550.13774.1|Name=mRNA_L-elsbetiae_contig550.13774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5532bp|location=Sequence derived from alignment at L-elsbetiae_contig550:29810..36384+ (Laminarionema elsbetiae ELsaHSoW15)back to top |