Homology
BLAST of mRNA_L-elsbetiae_contig55.13768.1 vs. uniprot
Match: A0A6H5L2X6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.250e-29 Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 2 Query: 35 GMEEAALRAWASGRAYSGLAGLRRNALKRRLGLFLLGRGTAGRRRLLGRKGLSALEAALLRAGGERDLVAEAVTGRVRAALKRWGRRASVLRARKA 322
G+E AALRAWASGR YSGLAGLRRNALK RL +FLL RG+A RRRLLG +GL ALEAA+LRA RD+ AEA+ GR RAAL RWG RASVLRAR+A
Sbjct: 119 GIETAALRAWASGRLYSGLAGLRRNALKHRLEVFLLDRGSAARRRLLGLRGLGALEAAVLRAAWRRDVAAEALAGRARAALGRWGWRASVLRARRA 214
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 342 |
Cds size | 342 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816577.3665867-CDS-L-elsbetiae_contig55:64810..65152 | 1622816577.3665867-CDS-L-elsbetiae_contig55:64810..65152 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig55 64811..65152 + |
1691683659.7233055-CDS-L-elsbetiae_contig55:64810..65152 | 1691683659.7233055-CDS-L-elsbetiae_contig55:64810..65152 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig55 64811..65152 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig55.13768.1 >prot_L-elsbetiae_contig55.13768.1 ID=prot_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
ARGRFAGGGPQGHGRGGAPRVGVGEGVLRPGRSAAQRAEAPPGLVPARQG HGRPPAPPGEEGTLRPGGRSAARRRGEGPRRRGRDREGAGGAEAVGSAGV GTAGAEGCSRGGG* back to topmRNA from alignment at L-elsbetiae_contig55:64811..65152+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig55.13768.1 ID=mRNA_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig55:64811..65152+ (Laminarionema elsbetiae ELsaHSoW15) GCGCGAGGGCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGG
CGCTCCGCGCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTG
CGGCGCAACGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGG
CACGGCCGGCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGG
AGGCCGCTCTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCC
GTGACCGGGAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTC
GGTACTGCGGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig55:64811..65152+ >mRNA_L-elsbetiae_contig55.13768.1 ID=mRNA_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig55:64811..65152+ (Laminarionema elsbetiae ELsaHSoW15) GCGCGAGGGCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGG CGCTCCGCGCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTG CGGCGCAACGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGG CACGGCCGGCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGG AGGCCGCTCTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCC GTGACCGGGAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTC GGTACTGCGGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAGGCGCGAGG GCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGGCGCTCCGC GCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTGCGGCGCAA CGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGGCACGGCCG GCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGGAGGCCGCT CTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCCGTGACCGG GAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTCGGTACTGC GGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAG back to top
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