mRNA_L-elsbetiae_contig5499.13764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5499.13764.1
Unique NamemRNA_L-elsbetiae_contig5499.13764.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5499.13764.1 vs. uniprot
Match: A0A6H5JN11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN11_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.310e-17
Identity = 72/181 (39.78%), Postives = 91/181 (50.28%), Query Frame = 3 
Query:   93 MDDGTSEEMREKDEDVCALFATSMPRDIWANPSLAALAGLIDEDEDQKDESTSQAEQ----EDQAVPREDVSKAGGPCPANDTEKESLSCPA----AATDNQRTGTSDSGGTSGARHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGPSSEFG---ARRRRTGPTTGETQVLMALWGL 602
            MD GT EE +EKDEDVCALFATSMPRD+WANPSLAALA +IDED ++K++     E     + Q  PRE     G    ++D  ++ L+       + T NQ      +  TSG+RHQ                              +G     G    R R + PTTGETQVLM+LW L
Sbjct:    1 MDHGTVEE-QEKDEDVCALFATSMPRDVWANPSLAALAAMIDEDAEEKEKQVDGQEHSSSNDHQGAPRE-----GSSSISDDGNEDGLAPRIQGAHSTTANQNGVRGGTTPTSGSRHQRREDMRRRRTERRASPYGPAAGRRV-----QGKHISSGRSVVRDRGSAPTTGETQVLMSLWRL 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5499.13764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN11_9PHAE1.310e-1739.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5499contigL-elsbetiae_contig5499:829..5470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size696
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5499.13764.1prot_L-elsbetiae_contig5499.13764.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5499 2786..5379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.2697449-UTR-L-elsbetiae_contig5499:828..8571622816577.2697449-UTR-L-elsbetiae_contig5499:828..857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 829..857 +
1691683659.6605437-UTR-L-elsbetiae_contig5499:828..8571691683659.6605437-UTR-L-elsbetiae_contig5499:828..857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 829..857 +
1622816577.2812576-UTR-L-elsbetiae_contig5499:2770..27851622816577.2812576-UTR-L-elsbetiae_contig5499:2770..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 2771..2785 +
1691683659.669395-UTR-L-elsbetiae_contig5499:2770..27851691683659.669395-UTR-L-elsbetiae_contig5499:2770..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 2771..2785 +
1622816577.3325417-UTR-L-elsbetiae_contig5499:5379..54701622816577.3325417-UTR-L-elsbetiae_contig5499:5379..5470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 5380..5470 +
1691683659.7120364-UTR-L-elsbetiae_contig5499:5379..54701691683659.7120364-UTR-L-elsbetiae_contig5499:5379..5470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5499 5380..5470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.2922826-CDS-L-elsbetiae_contig5499:2785..30051622816577.2922826-CDS-L-elsbetiae_contig5499:2785..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 2786..3005 +
1691683659.678443-CDS-L-elsbetiae_contig5499:2785..30051691683659.678443-CDS-L-elsbetiae_contig5499:2785..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 2786..3005 +
1622816577.3042817-CDS-L-elsbetiae_contig5499:3217..35311622816577.3042817-CDS-L-elsbetiae_contig5499:3217..3531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 3218..3531 +
1691683659.6872969-CDS-L-elsbetiae_contig5499:3217..35311691683659.6872969-CDS-L-elsbetiae_contig5499:3217..3531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 3218..3531 +
1622816577.3192134-CDS-L-elsbetiae_contig5499:5352..53791622816577.3192134-CDS-L-elsbetiae_contig5499:5352..5379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 5353..5379 +
1691683659.698435-CDS-L-elsbetiae_contig5499:5352..53791691683659.698435-CDS-L-elsbetiae_contig5499:5352..5379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5499 5353..5379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5499.13764.1

>prot_L-elsbetiae_contig5499.13764.1 ID=prot_L-elsbetiae_contig5499.13764.1|Name=mRNA_L-elsbetiae_contig5499.13764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MDVGPTAGGPSSVVEKMDDGTSEEMREKDEDVCALFATSMPRDIWANPSL
AALAGLIDEDEDQKDESTSQAEQEDQAVPREDVSKAGGPCPANDTEKESL
SCPAAATDNQRTGTSDSGGTSGARHQRREDTRRRRHDRRAAPYGTAAGGG
GRRRRGEGPSSEFGARRRRTGPTTGETQVLMALWGL*
back to top

mRNA from alignment at L-elsbetiae_contig5499:829..5470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5499.13764.1 ID=mRNA_L-elsbetiae_contig5499.13764.1|Name=mRNA_L-elsbetiae_contig5499.13764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4642bp|location=Sequence derived from alignment at L-elsbetiae_contig5499:829..5470+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCTCGTGACTGAGTGACACATCAGAGGTGGGAGATGAAGCCGTGAAG
GGCTGGAATGGACATCTCATCTCGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGGAGAGAGGGAGAGAGAGAGAGAGAGAGCAGGGTTTTCAG
CCGTTCGCCTCCAAGCTTGCGAAACGGCGTAGATAATAGTACACAGTTTC
AGCTTGATCCAATGTTCCCGTTGGAGAGTTTCAGGCTCGCCCACATAGCT
ACTGGCTCTGTTCCGGGAGGCCGGCCCGCGGCTCTCTTTATGTATGTAGA
TAGATTTGTATCACGAGGTTCTACATCGATGTTCATATATCTATACGTAG
TGAGGGTTCATTGACCTGTTGGTCCTCTGGATAACCCGTTGGCCACTCTT
GTGTGATAATTCGTTCCTGTTCCGGGGATGCAAGTCCTGACATTGATCCG
CTCTACAGCAGCAGTAGCACCTCGCGCGCTTCGCTTCCACCCTCTCGCCC
GCAACAGCTACCATAGCACACACTCCTGGCTAGCTCAAAGCTCGTTTGCC
CCGCACAGCAGCAGTAATACATAGCAGTGCCTCATATATTGGGAAAGAAC
TGCACTCCCCTGGTACAGCAGTAGGTTCATATCTAATGAGCCGCACACCA
ACCAGCACCGGCTCAACCTTAGCAGTAGTCTGATCCACCCACCACCACCC
GCGGACCCACGGCCCCAACTCCACCCCGAACCCACCCCCAGCAGTGATGA
CGTGGAGTGTCACGACATGCGATCACTTGGTTTCAGTTGATGCCACTGGC
GCACCGTTGTGGCTCGAGATCCATTCTCTGCGTTCTGGCGAGAAAATCAA
CTTCTGCCAGCACACAACTTTCCAATGCAACTTTCCCTGCTTGCTGGTGT
GTGTTGAGCTGTGTGCGAGCTTATACGCTCTCGGCGGTCACCTAACTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCGCACGCGCACAAACAC
ACACACCGATTTTGACTCCCTTCCCTTGGTGAAAAAAACGTTATTCCGAA
CAGACCAACAATTGTGAAGTAATTCGTCGAGAAGAGGTACACACCAAAGA
GCTCCGAACAAAGAGCGCGAGTACAGCTGTCGACACATCTGCTCAGTTTC
GCCTGGAAAGACTGAGAGGCAGGCACATGAAGGATTTTTGTCTCTCTCTT
TGTCCCTTTTTGTCACGCATATCACGCACGCACGTTCGGACTCAATATGT
CCGCCGTTATGCGATCAGCACATCAGCATAATACCCCTGCATGATCAGTG
AACCCATGCCGACCTTCCCCCGCCGGTGTCGTCTCGCTCCTCCGTCTTCG
TAGCTACCCCTCTCTGTGGTCTCTGCCTCAATTAGGGTGCTGTGTGCTAC
CCCTCTCTGTGGTCTCTGCCTCAATTTCGGCGAAACTGTCAATATAGGAT
ATCCGGTTGGTATCCCTTCGTCGTGTAAAACCCTGGGGTTACTTCTTAAC
TGGCCCAGGATCTCCGTCCGGAATCTCGACAAACACTCGTATATCACGGC
CGTCTCTTGTCAGAGCATAATTGTACCGGCGTGACACCCAGTTCCCTATT
TTTCTTCCCCCTCAGAAGGCAGCAGATCGCCAGTCGGTGCTCTATGGACC
TTGTTCTGATCAAAAAGGAGGGCCATTTCGATCGCCCGGTTAATCAAGTT
GGAGGGGCGCTACACGCGATTGGAGAACATTTGGCCAATATTTAGAGCCT
CGTTTTTCCCTAGATGGGAAAAAAAGGTCGCGGCTTCGCCGCTCCGCGGC
TCATTATCATACAGTCTTGTATGTGTTACACTCTTGTGGTATTATACTTC
ATGTGTGACTCTTCAACTACTGTCGGTGAGCAACCGAAATGCTACGATAA
ACAAATAAACACACTTTACACCCACTATGCTGGCAGCACCAGGTCAAATT
CTGCAAGATGGACGTAGGACCTACCGCCGGAGGGCCTTCCTCCGTGGTCG
AAAAAATGGATGATGGTACGAGCGAGGAGATGCGTGAAAAAGATGAAGAC
GTCTGTGCGTTGTTCGCGACGAGCATGCCCCGAGATATATGGGCGAATCC
GTCTCTAGCAGCCCTGGCTGGGCTGATCGATGAAGACGAGGATCAGAAAG
ACGAGAGCACCAGTCAGGCTGAACAAGGTAACCTAAAATATGCCGTTGAA
AGAACAGACCCACGGATAACTCTGGCGGCTCACATGCTGGATGACGTTTC
GAAGGTCAACCCCCATGACAACTTTGCGTTTCGAAGGCTTCAACCGCGGC
TGTTGGGTGTACAGTTGGTGCTCTTCTTCCTCACGCAGTCATTTGCCGAC
TTGATTGGCTGTTGCTTATACTTGCCTGTTCTTTGGCAGAGGATCAAGCT
GTCCCACGGGAAGATGTATCGAAAGCAGGCGGCCCTTGTCCAGCGAACGA
CACAGAGAAAGAGTCACTATCCTGTCCAGCCGCTGCTACCGACAACCAAC
GAACCGGCACCAGTGACAGCGGCGGCACCTCGGGCGCCAGGCATCAACGT
CGAGAGGATACCAGGCGAAGACGGCATGACAGGAGAGCGGCCCCCTATGG
TACTGCTGCTGGTGGTGGTGGCCGGAGGAGGCGTGGTGAGGGGCCGTCTT
CGGAGTTTGGGGCGAGGCGTCGAAGAACGGGGCCAACGACGGGCGAAACG
CAGGTACAAAAAAATGATGAACGTGTTCCTATCTTTGAAGTAGATGGCAA
TATCACGACAACACGGAGGGCTTCTCCCCGGTAGACGTGTTGGTCGACCT
GGCTGAGTTTTGCAAGGGAGGTATTGAATTCTTCGGATATTTTAGGTGTT
TTTCTGCTCTACTGAACCAATATCACGTCACTTAATGACGGGGCTAGGTT
CCATTTTTGATTCACTGGTTTCTATTGAAGACCAATATTACGTCACTTAA
TGACGGCACCGACGGTCCTTTGCTACTAGATTTGTTGCTGTTGCTGCGCG
AACCCAATACTCTCGATAATTGTTTCGTCCTGGTTCTGTTCTCAAGTTGG
AAGCTCCATCTTACCAGATTTATGAGACTGATGGGAATCTCATCGGTCCC
GGTTTCAACAAACTTTTGCGGTATAATCAAGATAAGGGTTCATAAATATT
GAACTTCATTTACACTTTAATCGATTGCAGCAGCTCGACGATGCCAATTA
CAGCCTACCGGTGTGTTTGTCGTACACATTATGTACGCGCTTGGATGTTG
ACAAGTTTGGACCACACAAACCCGCAGCATCCGTGGTTCCAAACAAGTCG
AGAAAATCCAGCATGATCATGATGGACACGACACAGCTATATGTACGACC
GCACCGTTTGCGGTCAACCTCCCAATGATAACATCAATGAGTAGGGTAAC
TTGTCACCACAGCAAGGAAGACGGAGCTGTCACGCGACGAGCACACAGAG
TACACAGCTGGTACATAGCCGTTTTCGCCGAGGTTTCGGCAGCAGGTGGG
AACTAGTCTGCGCGGCCTTAGGAGAGAAACCTTGTTGGTTGTATGCAGTT
CCAGCAACGGACAAAGAAACTCCGATCGACATACAATCGCATGCCTTCCC
CTAACGACGAGAGAAAACGCTCAGAAGTCCACCGATTGAAACGTTCCGGG
AACGGGCCAGGCACGCGCACTGTATATAAATAGCTAAATGTGTACTCCGT
CGTAGCTATTTAGTTGGGGTCTCTTGGAAAGAAGTAAAACACACTTCACC
AGCACAAAATCGCACACTCAGATTTCGCGCCCCCGGGTGAGATCAAGCTC
TCTAACTTGCTATGGTCTGATCCCGGCATTCTTCTCACGCAAAACAGCGC
AGCGCTTGCAGGCGAATTTAGAAAAACAGCTGCTCACTTGCAGCGCGGCT
TGCATACACAAACATGTACCATACAAAATACGGGGGAAGGAGAGGCGGAC
AGACAGTGCGGCTCTACATACACTTATAGTGTAACGTCACAAAGAACGCG
GGATGACACACCACACCAATTGCCCCAAAAGATTATTCTGTAGACCTTGG
CCCGATTTAGCGAGAGATACATACTCTAAGTAGAGAGAGAGAGCAATATG
CAGCTCAATCGTGGCAAGGGATTCGCGAAGAGTTCGAAGGTCGAGGAAAG
TTTGATTCGACGAAGCAGCTTGACCCGGACAAGGCAAACGCAGCATTATC
AAGAGCACGAGAGAGAGAGGAAAGGCGAAACAAATCGAACGGCGGATCGT
TCTGACAGGGGCTACATGAACCCATGCAGATGTAGTTGCTCGGCATCGTG
ATTAAGATGTGCTACATAGCTAGAGATAACCAAGCTGTGGTGGTTGGGCC
TTGACCCTCGGAGGCGTTTCCTAAACTTGTGGAAGTTCCTTTCAATCTCC
TAATGCCCCGACTCCCAGGGCCGGCGCTTGACCCTATCCCCTCTGCTTTA
ACTGCGGTAACGCTGACGGTACCTGCGCAACATCTTCGGCCTTCTGTTCC
CCGCACCCCGCCGCCGCAACACAGGTGTTGATGGCCCTGTGGGGATTGTA
GAAGCCGCCGACACATTCCGCATCATGGCTTTAGCACACCGCCCACGACG
ACTGAGTGCACCGTATCACCTGAGGTTTTCGGTGTCGCCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5499:829..5470+

>mRNA_L-elsbetiae_contig5499.13764.1 ID=mRNA_L-elsbetiae_contig5499.13764.1|Name=mRNA_L-elsbetiae_contig5499.13764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig5499:829..5470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTAGGACCTACCGCCGGAGGGCCTTCCTCCGTGGTCGAAAAAAT
GGATGATGGTACGAGCGAGGAGATGCGTGAAAAAGATGAAGACGTCTGTG
CGTTGTTCGCGACGAGCATGCCCCGAGATATATGGGCGAATCCGTCTCTA
GCAGCCCTGGCTGGGCTGATCGATGAAGACGAGGATCAGAAAGACGAGAG
CACCAGTCAGGCTGAACAAGATGGACGTAGGACCTACCGCCGGAGGGCCT
TCCTCCGTGGTCGAAAAAATGGATGATGGTACGAGCGAGGAGATGCGTGA
AAAAGATGAAGACGTCTGTGCGTTGTTCGCGACGAGCATGCCCCGAGATA
TATGGGCGAATCCGTCTCTAGCAGCCCTGGCTGGGCTGATCGATGAAGAC
GAGGATCAGAAAGACGAGAGCACCAGTCAGGCTGAACAAGAGGATCAAGC
TGTCCCACGGGAAGATGTATCGAAAGCAGGCGGCCCTTGTCCAGCGAACG
ACACAGAGAAAGAGTCACTATCCTGTCCAGCCGCTGCTACCGACAACCAA
CGAACCGGCACCAGTGACAGCGGCGGCACCTCGGGCGCCAGGCATCAACG
TCGAGAGGATACCAGGCGAAGACGGCATGACAGGAGAGCGGCCCCCTATG
GTACTGCTGCTGGTGGTGGTGGCCGGAGGAGGCGTGGTGAGGGGCCGTCT
TCGGAGTTTGGGGCGAGGCGTCGAAGAACGGGGCCAACGACGGGCGAAAC
GCAGAGGATCAAGCTGTCCCACGGGAAGATGTATCGAAAGCAGGCGGCCC
TTGTCCAGCGAACGACACAGAGAAAGAGTCACTATCCTGTCCAGCCGCTG
CTACCGACAACCAACGAACCGGCACCAGTGACAGCGGCGGCACCTCGGGC
GCCAGGCATCAACGTCGAGAGGATACCAGGCGAAGACGGCATGACAGGAG
AGCGGCCCCCTATGGTACTGCTGCTGGTGGTGGTGGCCGGAGGAGGCGTG
GTGAGGGGCCGTCTTCGGAGTTTGGGGCGAGGCGTCGAAGAACGGGGCCA
ACGACGGGCGAAACGCAGGTGTTGATGGCCCTGTGGGGATTGTAGGTGTT
GATGGCCCTGTGGGGATTGTAG
back to top