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Homology
BLAST of mRNA_L-elsbetiae_contig5496.13758.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI) HSP 1 Score: 353 bits (906), Expect = 8.180e-103 Identity = 245/349 (70.20%), Postives = 265/349 (75.93%), Query Frame = 1
Query: 145 DGSTFEYEDKLGDLGEEATAAXXXXXXXXSVQAQPSQQPDGSGANVEPRKDAALEEGLASLDMEDDSPIPFGEVVTLMLSQLRRKNIKFRRAAASSLAALLNAFPECCVYDLVGPTLLDLSGISARPPQAQVQPLTTGSXXXXXXXXXXAKVDPIMQARAVACLAAAWPRVPSPSSGASSXXXXXXXXXXXXXXXXXXX------------DAVRKLQRAHAASLTRALSGALSRVVWSVRVPIYGALSAVVSRTTTTTPESLSPVLTGSLLADVVQAVELGAEDAKYSQVRAAAISVVVAMTSRKELRLALTPHKEGLVGAARTAAEDPEPRVAVEGSKAAQNLSWWP 1155
DG FEY+DK+GDL +A A +VQAQ + DG +PRKDAALE GLASLDMEDDSP PFG+VV LMLSQLRRK+ KF RAAASSLA LL+AFPECCVYDLV PTLL+L+G+ G+ XXXXXXX PIMQARAVACLAAAWPRVP+ XXXXXXXXXXXXXXXXXXX DAV +QRAHAASLTR LSGA+ VWSVRVPIYGALSA+VSRTT ES +PVLTGSLLADVV+AVELGAEDAKYSQVRAAAISVV AMT RKELRLALTPHKEGL GAARTAAEDPEP+VAVEGSKAAQNLSWWP
Sbjct: 1958 DGPAFEYKDKVGDLDRDA-AGPAAAAPGEAVQAQ---REDG-----QPRKDAALEAGLASLDMEDDSPTPFGDVVALMLSQLRRKDTKFGRAAASSLAVLLDAFPECCVYDLVAPTLLELAGLD-------------GAAAGXXXXXXXXXXXPIMQARAVACLAAAWPRVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXARQADATTTRIDAVCNVQRAHAASLTRVLSGAILLKVWSVRVPIYGALSAIVSRTTAAA-ESRAPVLTGSLLADVVRAVELGAEDAKYSQVRAAAISVVGAMTCRKELRLALTPHKEGLAGAARTAAEDPEPKVAVEGSKAAQNLSWWP 2283
BLAST of mRNA_L-elsbetiae_contig5496.13758.1 vs. uniprot
Match: A0A836CAR0_9STRA (Proteasome stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.030e-9 Identity = 138/351 (39.32%), Postives = 163/351 (46.44%), Query Frame = 1
Query: 139 GADGSTFE--YEDKLGDLGEEATAAXXXXXXXXSVQAQPSQQPDGSGANVEPRKDAALEEGLASLDMEDDSPIPFGEVVTLMLSQLRRKNIKFRRAAASSLAALLNAFPECCVYDLVGPTLLDLSGISARPPQAQVQPLTTGSXXXXXXXXXXAKVD--------PIMQARAVACLAAAWPRVPSPSSGASSXXXXXXXXXXXXXXXXXXXDAVRKLQRAHAASLTRALSGALSRVVWSVRVPIYGALSAVVSRTT-TTTPESLSPVLTGSLLADVVQAVEL--GAEDAKYSQVRAAAISVVVAMTSRKELR---LALTPHKEGLVGAARTAAEDPEPRVAVEGSKAAQNL 1143
GADG + YEDKLGDL EA XXXXXXX Q + A PR I +GEVV L++ QL R++ RRAAASS+AAL AFPEC + PTLL + + XXXXXXXXXX P+MQARAV L AAWPR GA XXXXXXXXXXXXXXXXX + AL VWSVRV + + ++ T ++ + G L V AV G D KYS VR AA +A+ S L+L P KE L AR AA D + VA G+KA Q L
Sbjct: 2151 GADGGSAAAAYEDKLGDLAAEAEPMDXXXXXXXXXXXXXGAQQ--AAAPAPPR-------------------IAYGEVVGLLVRQLGRQSKLVRRAAASSVAALAPAFPECDTFAAAAPTLLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVMQARAVEALTAAWPR------GAGGXXXXXXXXXXXXXXXXX--------------------AAALPTRVWSVRVQLLRLIKTILEAGFGAATADAAAAASCGRALPAVAPAVASAGGIGDLKYSAVRVAAAEAALALASVSPAGPGGLSLVPFKEALQDVARVAAADGDASVASLGAKAQQAL 2454
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 316.6 |
| Seed ortholog evalue | 1.1e-83 |
| Seed eggNOG ortholog | 2880.D8LM84 |
| KEGG ko | ko:K11886 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | proteasome assembly |
| EggNOG OGs | KOG0915@1,KOG0915@2759 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03051 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_005705.1 |
| Exons | 3 |
| Model size | 1873 |
| Cds size | 828 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816576.6461895-UTR-L-elsbetiae_contig5496:7280..7995 | 1622816576.6461895-UTR-L-elsbetiae_contig5496:7280..7995 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5496 7281..7995 - |
| 1691683659.275024-UTR-L-elsbetiae_contig5496:7280..7995 | 1691683659.275024-UTR-L-elsbetiae_contig5496:7280..7995 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5496 7281..7995 - |
| 1622816576.701004-UTR-L-elsbetiae_contig5496:9645..9975 | 1622816576.701004-UTR-L-elsbetiae_contig5496:9645..9975 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5496 9646..9975 - |
| 1691683659.3215444-UTR-L-elsbetiae_contig5496:9645..9975 | 1691683659.3215444-UTR-L-elsbetiae_contig5496:9645..9975 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5496 9646..9975 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816576.6586235-CDS-L-elsbetiae_contig5496:7995..8175 | 1622816576.6586235-CDS-L-elsbetiae_contig5496:7995..8175 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 7996..8175 - |
| 1691683659.2893128-CDS-L-elsbetiae_contig5496:7995..8175 | 1691683659.2893128-CDS-L-elsbetiae_contig5496:7995..8175 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 7996..8175 - |
| 1622816576.6769524-CDS-L-elsbetiae_contig5496:8686..9269 | 1622816576.6769524-CDS-L-elsbetiae_contig5496:8686..9269 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 8687..9269 - |
| 1691683659.3028228-CDS-L-elsbetiae_contig5496:8686..9269 | 1691683659.3028228-CDS-L-elsbetiae_contig5496:8686..9269 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 8687..9269 - |
| 1622816576.6905048-CDS-L-elsbetiae_contig5496:9580..9645 | 1622816576.6905048-CDS-L-elsbetiae_contig5496:9580..9645 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 9581..9645 - |
| 1691683659.3126538-CDS-L-elsbetiae_contig5496:9580..9645 | 1691683659.3126538-CDS-L-elsbetiae_contig5496:9580..9645 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5496 9581..9645 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5496.13758.1 >prot_L-elsbetiae_contig5496.13758.1 ID=prot_L-elsbetiae_contig5496.13758.1|Name=mRNA_L-elsbetiae_contig5496.13758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MEDDSPIPFGEVVTLMLSQLRRKNIKFRRAAASSLAALLNAFPECCVYDL
VGPTLLDLSGISARPPQAQVQPLTTGSGGGGGGSGGGAKVDPIMQARAVA
CLAAAWPRVPSPSSGASSVSPAEAERDGAAVAAAAAADAVRKLQRAHAAS
LTRALSGALSRVVWSVRVPIYGALSAVVSRTTTTTPESLSPVLTGSLLAD
VVQAVELGAEDAKYSQVRAAAISVVVAMTSRKELRLALTPHKEGLVGAAR
TAAEDPEPRVAVEGSKAAQNLSWWP* back to topmRNA from alignment at L-elsbetiae_contig5496:7281..9975- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5496.13758.1 ID=mRNA_L-elsbetiae_contig5496.13758.1|Name=mRNA_L-elsbetiae_contig5496.13758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2695bp|location=Sequence derived from alignment at L-elsbetiae_contig5496:7281..9975- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGCTGGCGGTGATAGTGACGGTGTGCCAGGAAAGGTGGCGTCGGC
GGGCTCGAAAGGCAGCGACGGGGACGGGGACGGGGACGGCGATTGCTCGG
CCTCTGACGACAACGGCGGCGCCGCGGACGACGCCGGCGGGGCGGACGGT
TCCACCTTCGAGTACGAAGATAAGCTCGGTGACCTTGGCGAAGAAGCGAC
AGCAGCGGCGGCGGCGGCGGCGGCGGGTGTGAGCGTGCAAGCCCAGCCCA
GCCAGCAGCCAGATGGGTCGGGCGCCAACGTGGAACCAAGGAAGGACGCC
GCGCTGGAGGAAGGATTGGCGTCGCTGGACATGGAGGACGATTCGCCAAT
CCCTTTCGGGGAGGTTGTGACCCTAATGCTGTCCCAGCTCCGGCGGTGAG
ACTATTGCAGTACTGCCAGTTGTTTGTTTTTGGGCATCGGCGTCCAATCT
TGGTCACAAAAACATGCGTGCGTGGCACAGCAGTGCCTGAAGGCCGTGGA
AAGATCCAACGCTGTCTTGTCACCGACGGTTACGACTACTGTTTTGTCGA
TTCTTCAGGGTTTTTTGTGTGTACTAGTAGTAAATTTTGTGCTTCCTGTT
GGAGGAAGGTACGGTCGCCACAATGTCTTGACCGTCTAATTAATTTTACC
CGGTTCGTTCTCTTCTCCCGCTCCTATTCGCACGTGTGCATGAACCCACC
CATCAGGAAAAACATCAAGTTCCGGCGAGCCGCAGCCTCGTCCCTCGCCG
CGCTCCTCAACGCCTTCCCGGAGTGCTGCGTGTACGACCTGGTCGGGCCC
ACCCTCCTCGACCTCTCCGGGATCAGCGCGCGCCCCCCCCAAGCCCAAGT
CCAACCCCTGACGACGGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCG
GTGCAAAAGTAGACCCGATCATGCAGGCTCGCGCCGTGGCGTGTCTGGCG
GCGGCTTGGCCTCGCGTTCCCTCTCCCTCCTCGGGAGCGTCCAGCGTTTC
TCCGGCAGAAGCCGAAAGAGACGGCGCTGCCGTTGCCGCCGCCGCCGCGG
CCGATGCCGTCCGCAAGCTCCAGCGTGCGCACGCGGCATCCTTGACTCGC
GCGCTGTCGGGGGCGCTGTCGCGGGTGGTGTGGAGCGTACGAGTCCCTAT
CTACGGCGCGCTGTCAGCGGTGGTGAGCAGGACGACGACGACCACCCCCG
AGTCTCTCTCTCCCGTGCTGACGGGGTCGCTCCTCGCGGATGTCGTCCAG
GCCGTGGAGCTGGGGGCGGAGGACGCCAAGTACTCCCAGGTTTGTGTCTT
GCGCGTCATGGAGGGCCTGGAGTCTTTATTTTGCTTTCTTAACGCTGCGT
CATAGGCAGGAGGGAGGCAGCACGAGAGGTTCAAACAAGGACAAGGAGAC
CCATGCACTGAACCATCTCGTTGAGTCTTATTGGATGAAAGTGATCCGTG
CCTGAGACTTCCCTGGTTGTTGTTGCTGCTGCAACTCTCTGGTTCTGGTC
AATGCCTCGATCTGGCGTTTTTTTTTTTTTCAAGTCACGCTTTTCAGAGG
TCAACTTGGCTTTCCGCACCAAGGCTATCGCGACTCCGTCCACATGAAGT
TCGCCCGACGGGCGACTGGCGGACTGGCGAGACAGACGCGGTGTGACGCC
AGCCAGTGCAGCGCGCCCTTTTTGTTTTCTAGACGCGCGCACTGACTGGT
CCACTAGATACCCCGTCCTCTACCTCACCCCCGCAATACACCGACCGTGT
TGGAAAAAAATATATAGATACCTAAATGTGTTATGTCGGCAAACCTGCAG
GTACGAGCGGCAGCTATTTCCGTCGTGGTGGCCATGACTTCGCGCAAGGA
GCTGCGGCTGGCGCTAACGCCGCACAAGGAGGGGCTCGTCGGGGCGGCAA
GGACCGCGGCCGAAGACCCGGAGCCGAGGGTCGCAGTAGAGGGGAGCAAG
GCGGCGCAAAACCTTTCTTGGTGGCCGTGAATAGGAGTTTGTTTATTTTC
AGCACGTGCACCGCCCTCGTTTACTTACCTTGTGAGAGGGCGAGTGGCAT
TTTTGTCTTTCCAAGTGCGTGCCAGATACCTAGGTATTCATGATTTCGTT
TTTTTTTGTCAGTCTTTTGTAAGAGAGCAGCGTTGATACCACTCGGGCCT
GGTTCTATATGGAGCCGGTGGAGCGAGGTGACGCTGGCTTGCTGAGTTGC
AGTTGTTTCTCAGAGGAGAAGGATTGCTTGTTACTGAATGACGACAGGAT
TAAACATAGACCGAAATCGACCGCAGCCTGCACAGGCTGTGCACGTTCTG
ACCACTGCATGGGTCACACCGGCCGACCGACATGTGTGGCCATCCAAGCC
AGGAGCCCCACCGCGAGACAAGTCCTCGAAGAAATAAGCCAGGTGTAAGA
ACCTGAGACCCAAGGCACCAAGCTAGACTAGACCTGCTAGACCGGTTGCT
TTGGGTCTCGGGTTCATGCGTCTGACTTAGTTCTCCAGTGGGCTTGTCTC
GCGGTGAGGCGCCTGCCTTGGATGGCCAAGTGCGTATATGTATGTATATG
TTTCCCCCGAAAGCCATGTTGTCATATGTACGTACGCGCCCGGCGGTTCT
AACCTGCTGGAAATGATTGAAATACAAATACGTACATATGTACACGAGCA
GCTTTGTTTTTTATCGGCGGTTTCAAAACCGGTCGGCGGTTGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5496:7281..9975- >mRNA_L-elsbetiae_contig5496.13758.1 ID=mRNA_L-elsbetiae_contig5496.13758.1|Name=mRNA_L-elsbetiae_contig5496.13758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig5496:7281..9975- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACGATTCGCCAATCCCTTTCGGGGAGGTTGTGACCCTAATGCT
GTCCCAGCTCCGGCGATGGAGGACGATTCGCCAATCCCTTTCGGGGAGGT
TGTGACCCTAATGCTGTCCCAGCTCCGGCGGAAAAACATCAAGTTCCGGC
GAGCCGCAGCCTCGTCCCTCGCCGCGCTCCTCAACGCCTTCCCGGAGTGC
TGCGTGTACGACCTGGTCGGGCCCACCCTCCTCGACCTCTCCGGGATCAG
CGCGCGCCCCCCCCAAGCCCAAGTCCAACCCCTGACGACGGGCAGCGGCG
GCGGCGGCGGCGGCAGCGGCGGCGGTGCAAAAGTAGACCCGATCATGCAG
GCTCGCGCCGTGGCGTGTCTGGCGGCGGCTTGGCCTCGCGTTCCCTCTCC
CTCCTCGGGAGCGTCCAGCGTTTCTCCGGCAGAAGCCGAAAGAGACGGCG
CTGCCGTTGCCGCCGCCGCCGCGGCCGATGCCGTCCGCAAGCTCCAGCGT
GCGCACGCGGCATCCTTGACTCGCGCGCTGTCGGGGGCGCTGTCGCGGGT
GGTGTGGAGCGTACGAGTCCCTATCTACGGCGCGCTGTCAGCGGTGGTGA
GCAGGACGACGACGACCACCCCCGAGTCTCTCTCTCCCGTGCTGACGGGG
TCGCTCCTCGCGGATGTCGTCCAGGCCGTGGAGCTGGGGGCGGAGGACGC
CAAGTACTCCCAGGAAAAACATCAAGTTCCGGCGAGCCGCAGCCTCGTCC
CTCGCCGCGCTCCTCAACGCCTTCCCGGAGTGCTGCGTGTACGACCTGGT
CGGGCCCACCCTCCTCGACCTCTCCGGGATCAGCGCGCGCCCCCCCCAAG
CCCAAGTCCAACCCCTGACGACGGGCAGCGGCGGCGGCGGCGGCGGCAGC
GGCGGCGGTGCAAAAGTAGACCCGATCATGCAGGCTCGCGCCGTGGCGTG
TCTGGCGGCGGCTTGGCCTCGCGTTCCCTCTCCCTCCTCGGGAGCGTCCA
GCGTTTCTCCGGCAGAAGCCGAAAGAGACGGCGCTGCCGTTGCCGCCGCC
GCCGCGGCCGATGCCGTCCGCAAGCTCCAGCGTGCGCACGCGGCATCCTT
GACTCGCGCGCTGTCGGGGGCGCTGTCGCGGGTGGTGTGGAGCGTACGAG
TCCCTATCTACGGCGCGCTGTCAGCGGTGGTGAGCAGGACGACGACGACC
ACCCCCGAGTCTCTCTCTCCCGTGCTGACGGGGTCGCTCCTCGCGGATGT
CGTCCAGGCCGTGGAGCTGGGGGCGGAGGACGCCAAGTACTCCCAGGTAC
GAGCGGCAGCTATTTCCGTCGTGGTGGCCATGACTTCGCGCAAGGAGCTG
CGGCTGGCGCTAACGCCGCACAAGGAGGGGCTCGTCGGGGCGGCAAGGAC
CGCGGCCGAAGACCCGGAGCCGAGGGTCGCAGTAGAGGGGAGCAAGGCGG
CGCAAAACCTTTCTTGGTGGCCGTGAGTACGAGCGGCAGCTATTTCCGTC
GTGGTGGCCATGACTTCGCGCAAGGAGCTGCGGCTGGCGCTAACGCCGCA
CAAGGAGGGGCTCGTCGGGGCGGCAAGGACCGCGGCCGAAGACCCGGAGC
CGAGGGTCGCAGTAGAGGGGAGCAAGGCGGCGCAAAACCTTTCTTGGTGG
CCGTGA back to top
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