mRNA_L-elsbetiae_contig5490.13753.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5490.13753.1
Unique NamemRNA_L-elsbetiae_contig5490.13753.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5490.13753.1 vs. uniprot
Match: D7FZK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK1_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.740e-16
Identity = 67/118 (56.78%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:   79 SKEDARRRKLQEWQESKAS--GKRTPAPERKTVPDRKAQFFERRERRLEEEKKKRMSRPGGRENSISTPTPTTYSRSKMTPSATTSRLLSTPRGGPAPDPHPHGQ--LTGTTPVSAVR 420
            SKE+ RR KLQ+W+ESKA+   K TPA ERK  PDRKAQFFERRERRL+EE++KR SR  G+EN++    P   +  K   S  T RL STPR G A D    GQ  LT TTP SA R
Sbjct:   16 SKEEDRRLKLQQWKESKAALEKKVTPA-ERKAAPDRKAQFFERRERRLQEEREKRASR-SGKENNM----PPAEASRKAAGSDQTHRLSSTPRPGAASD----GQVKLTETTPASAAR 123
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BLAST of mRNA_L-elsbetiae_contig5490.13753.1 vs. uniprot
Match: A0A6H5JIX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.040e-6
Identity = 50/97 (51.55%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:   79 SKEDARRRKLQEWQESKAS--GKRTPAPERKTVPDRKAQFFERRERRLEEEKKKRMSRPGGRENSISTPTPTTYSRSKMTPSATTSRLLSTPRGGPA 363
            SKE+ RR KLQ+W+ESKA+   K TPA ERK  PDRKAQFFERRER          SR  G+EN++    P   +  K   S  T RL STPR  PA
Sbjct:   16 SKEEDRRLKLQQWKESKAALEKKVTPA-ERKAAPDRKAQFFERRERXXXXXXXXXXSR-SGKENNM----PPVEASRKAAGSDQTQRLSSTPRPRPA 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5490.13753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZK1_ECTSI1.740e-1656.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX2_9PHAE4.040e-651.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5490contigL-elsbetiae_contig5490:2928..6587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size500
Cds size498
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5490.13753.1prot_L-elsbetiae_contig5490.13753.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5490 2928..6587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.2190783-CDS-L-elsbetiae_contig5490:2927..32151622816576.2190783-CDS-L-elsbetiae_contig5490:2927..3215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 2928..3215 +
1691683658.9538362-CDS-L-elsbetiae_contig5490:2927..32151691683658.9538362-CDS-L-elsbetiae_contig5490:2927..3215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 2928..3215 +
1622816576.2334175-CDS-L-elsbetiae_contig5490:3538..36911622816576.2334175-CDS-L-elsbetiae_contig5490:3538..3691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 3539..3691 +
1691683658.962712-CDS-L-elsbetiae_contig5490:3538..36911691683658.962712-CDS-L-elsbetiae_contig5490:3538..3691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 3539..3691 +
1622816576.24702-CDS-L-elsbetiae_contig5490:6530..65871622816576.24702-CDS-L-elsbetiae_contig5490:6530..6587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 6531..6587 +
1691683658.9707124-CDS-L-elsbetiae_contig5490:6530..65871691683658.9707124-CDS-L-elsbetiae_contig5490:6530..6587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5490 6531..6587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5490.13753.1

>prot_L-elsbetiae_contig5490.13753.1 ID=prot_L-elsbetiae_contig5490.13753.1|Name=mRNA_L-elsbetiae_contig5490.13753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MSTLSNEAGAAAVAVMTDVSITASARSKEDARRRKLQEWQESKASGKRTP
APERKTVPDRKAQFFERRERRLEEEKKKRMSRPGGRENSISTPTPTTYSR
SKMTPSATTSRLLSTPRGGPAPDPHPHGQLTGTTPVSAVRGALPRPRQAA
TTSSSVAKTPSSHHTA
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mRNA from alignment at L-elsbetiae_contig5490:2928..6587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5490.13753.1 ID=mRNA_L-elsbetiae_contig5490.13753.1|Name=mRNA_L-elsbetiae_contig5490.13753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3660bp|location=Sequence derived from alignment at L-elsbetiae_contig5490:2928..6587+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACCCTGTCGAACGAAGCTGGTGCTGCGGCTGTTGCTGTAATGAC
AGACGTAAGCATCACCGCTTCAGCAAGGAGCAAGGAGGATGCTAGACGGC
GAAAGCTGCAGGAATGGCAGGAGAGCAAGGCGTCAGGCAAGAGGACCCCC
GCGCCGGAGAGAAAGACGGTACCAGATAGGAAGGCGCAGTTCTTTGAGAG
ACGGGAGCGGAGACTGGAGGAAGAGAAGAAGAAACGCATGTCCAGGCCGG
GAGGGAGGGAAAACAGCATCAGCACGCCGACACCAACGGTGAGCTGCAGG
AAGAGCGCCTTATACACGACGTACAGCAGTGTGTAGGCGAGACAACGTGT
GCCGGTCGAAAGCACCCGCAGTCTTTCTTCTGGTACAGCTCTCGTCTGAC
GACTCGTCCGGTCTGTTCCCTATTTCCTTCTCTCTTCTCTCTCACTAAAT
CCGCTTCGCTCCCATTGTTGAACCGCTCTCCTCTCACCTCACCGCGCATC
GCATCATTGCCGTTCCCCCTCCCGCGGCGTGCCGCTGGTGTCCCTCGCAC
TCGTTTTTGTGCCCCCGTGATTACCACCGTGCTCTCATTTCTGTTCTTTC
TCGGAACCAAGACCTACTCGAGGAGTAAGATGACCCCTTCGGCGACGACC
AGCAGACTCTTGTCGACCCCTCGGGGGGGTCCAGCCCCAGACCCTCACCC
TCACGGACAACTCACGGGGACCACACCAGTCTCGGCCGTGAGAGGCGCTC
TGCCTAGACCACGGGTAAGCGAACGTGACACAAAAACTGCTGCAACGGGG
GTATGTAGATATGTTCCGAAAATGGCGCGTTGTATGTACGCACCCTTTTG
ATACCCTTGAGCTGCCGTGGTTGCCCTTGGTGCGCCGCTTGAGTGAGGTG
CGAGTCACGACACGACCTCGCGGTGCGAAAGCGACTCCTACAATGCCTAC
ATAGTCGTGTGCTCGTGCAGCAGGCCACAAAAGCTTGTTGGGATAACCTT
GGATGGGTGTCCGCGATGATACGGCCTTTGCGCGGCCTCGTTCATCCACC
ACGCTGTCCATATAGTATACCTCACGGGGTTTGGCTTGAAGGCTGATTTT
AGATGTAGGTGGTGTCCTCTGCGGTGATTCGGCCCTTTCGCTGCACAGGG
GCGCTGTACATGCCTGGGTCGCAGCTTTTCTGATTATTACACATTCCTCT
AGAAAATAGCACAGTGTTGGGTATTTATCAAGTTTATTTTTGGGTTGATA
AGGTATTTGATGTACCACCCCCGAGATTCTTGATATTGGTATGATATCAA
GTATCATGTTGTATGATAGATATCTACCTGGTAGCAGGGTCACAAAAGTG
GCCTGCGGACCGCGGCAGCGCAGGTTTCTAGGGTAAATCTGCGGCTTGCC
GCAGAAAAACAAATTGGGCCGCAGAATTTTCGCCGAAGGCGAAAAAGAAA
TCTGCGGCCTTCTCGCCGCAGGCGAGAAGAAAAAAAATAGGTTGTTTTTC
TCGCCGGAGCCGAGAAAAATATTTTGGGGCCTATTTTCTCGCCGTAGGCA
CATTTTGAGTAATTTTAAAGGGTACTTCAGGCCAATTTCTATGGTCCCGG
AACAGTGGGTTGGAAATGGCTTTATGCCTGATTCACGGAGAAACCCCTAG
GCCAATTAAGAAAATGCTCCGAAGCCTGCTTAATTGCAGCCGAACTGGCC
GTTGGCCCCTTGCATTTGCCACACAAGCCATCAAGGGCAACTCTGCTGGA
GGGTAATGATGCTCAGTAACATGGAGCTCACTGTCTCAAGAGTAGAGAGC
AATCCATGAGCAGGAGGGCGAGGAATCGGTGTGTGCGTGTGTTTCTCGGG
TGATTGCACCTTTTCTCACCACCGTTTTTTGGTAGGAAAACGAGGCAATT
TACTCACCCAACAAACGCTTTCTGAGAACGGTAAGAAATGTCGTTGGCCA
TTCGCATTTGCCCCACAGGCCACTAAAATAAACTCTGCTTGACATACATA
TGTGATGCTCATCAACATGGAGCTTGTATTCTAAAGGCTAGAGCGTGATC
CGTGAGCAGGAGGGCAAGCACTCGGTGGTGCCGTGCGTTTTCAGGCAGTT
GCACCCTTTCCCATCGGCATTTTCCGCCCTCCGAAGGGGTTTCTCCGCGA
ATCAAGCATAAAACCGTTTCCTACCTACTTTTCCGGAACCATAAAAACCG
GCCTCAATAGGAAAAACCCAAATTTCGCCGCTCCGCGGGGCCCCTTCGGG
CCTCCGAGAGGGGGGGGGGGGGCTACGCGGCCGGCGCACTCCGGGGGCCC
TCCCGGGGGGCTCCTTCGGGGGGCCGCAGGTCGCCTTCGGCTCCGGCCTG
CGCAAGCGCAGCCCGCGCCTCGCCCACTTTTGTAACCCTGCTTGGTAGAT
ATGAATGACACTTATGTCGCGACTCTTTCATCTGTTGTGGCGCGAGAGAC
TCGCGGCTCTTCAACTGTTGTTGTGGCGCGAGAGACACTGTTATGGTATT
ACGACTGTAGGATGCAAGTTGAGCTAAGCTACGGCAGTTTAGATCTGAGA
TACGGCAGTTTTAGCTAAGATTGTACGGCAGTTTGGACATAGATGTGAGA
AACAGGTACCGGCGGGCATTGATGAAATGCCCGCCCGATTTTAGAGGTTT
GGTCACAAATAAATGCTGACGTCATGATAGAGTAGGTGCTTACATATCTT
CTGCCCGCCTTGCTGTTATGGACTTGTGCATATTGTATTTGGAGGAGGAT
GTTTTTGGCATGTTGTGGGCCTGCTTTTGCGTTCCGCACGTCTACCACTG
CTGGCCAAGAAACTCCTAGTGTACGGTTTTGTTTGAGGAACTACTTTCTA
TAACACGTTTACCCCCAGCATTTCCCGTCGTCCTTCAAGACGCAATTCTG
ATGTTATTATAGTTGATTTAACTTACTTCTACATACCTAGTAGGTTGGGT
ACTCTTCCAGAGATGGCTCTGTTATTTTGGCGGCTTGAGATAATATCATC
ATGAGACGAGCATGTTTGATTCCCCCCCGGCATAAGCACAATGACATTGA
ACGCGTGCCGTTCACCTCTCGAGAAAAGAGAGAGTGCGGCAGCCCGCAGC
CCGCACCCTCTGGTGTTGATGGGTATACCCGTTGTACGAACACAAACAAG
GCCTTACGCACAGTACGTAGTGTAGCACCATCGCTACGTGCGCAGGTAGG
TACTACTGGCCACGCTGACCTTGTGGCGTGCACAGGATCACACACGTAGA
CGCCCGGCGGCACGGACAAGTACTTCTAGTATCGTATCATGTCATATCAC
TCGATATATCACATGATATGTCATATCAAGATACATATCAAGAAATTAAA
CGTGATACGTGATACTGATAAATCACGAATATATCACATGATGTATCAAG
CAACTTGATGTTGATACCCGACACTACTAGAAAAGTATCGAGCTCAGGGC
TGCGTGATCCACCGGAGCTCTGTATGTATTTGTGACGAATGAATCATAAA
TATTTAACGCAGCCCCATCGCTGCAAACAACTTCCCCGCTGCTCCCTCCC
GGCGACGGGCATCGTTTTCTCCTCGTAAACTCCGCCTCGACGGCCATATG
TAGCAAGCGGCGACGACTTCTTCCTCGGTAGCCAAGACCCCTTCTAGCCA
CCACACCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5490:2928..6587+

>mRNA_L-elsbetiae_contig5490.13753.1 ID=mRNA_L-elsbetiae_contig5490.13753.1|Name=mRNA_L-elsbetiae_contig5490.13753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig5490:2928..6587+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACCCTGTCGAACGAAGCTGGTGCTGCGGCTGTTGCTGTAATGAC
AGACGTAAGCATCACCGCTTCAGCAAGGAGCAAGGAGGATGCTAGACGGC
GAAAGCTGCAGGAATGGCAGGAGAGCAAGGCGTCAGGCAAGAGGACCCCC
GCGCCGGAGAGAAAGACGGTACCAGATAGGAAGGCGCAGTTCTTTGAGAG
ACGGGAGCGGAGACTGGAGGAAGAGAAGAAGAAACGCATGTCCAGGCCGG
GAGGGAGGGAAAACAGCATCAGCACGCCGACACCAACGATGTCCACCCTG
TCGAACGAAGCTGGTGCTGCGGCTGTTGCTGTAATGACAGACGTAAGCAT
CACCGCTTCAGCAAGGAGCAAGGAGGATGCTAGACGGCGAAAGCTGCAGG
AATGGCAGGAGAGCAAGGCGTCAGGCAAGAGGACCCCCGCGCCGGAGAGA
AAGACGGTACCAGATAGGAAGGCGCAGTTCTTTGAGAGACGGGAGCGGAG
ACTGGAGGAAGAGAAGAAGAAACGCATGTCCAGGCCGGGAGGGAGGGAAA
ACAGCATCAGCACGCCGACACCAACGACCTACTCGAGGAGTAAGATGACC
CCTTCGGCGACGACCAGCAGACTCTTGTCGACCCCTCGGGGGGGTCCAGC
CCCAGACCCTCACCCTCACGGACAACTCACGGGGACCACACCAGTCTCGG
CCGTGAGAGGCGCTCTGCCTAGACCACGGACCTACTCGAGGAGTAAGATG
ACCCCTTCGGCGACGACCAGCAGACTCTTGTCGACCCCTCGGGGGGGTCC
AGCCCCAGACCCTCACCCTCACGGACAACTCACGGGGACCACACCAGTCT
CGGCCGTGAGAGGCGCTCTGCCTAGACCACGGCAAGCGGCGACGACTTCT
TCCTCGGTAGCCAAGACCCCTTCTAGCCACCACACCGCCCAAGCGGCGAC
GACTTCTTCCTCGGTAGCCAAGACCCCTTCTAGCCACCACACCGCC
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