mRNA_L-elsbetiae_contig5486.13748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5486.13748.1
Unique NamemRNA_L-elsbetiae_contig5486.13748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Match: A0A6H5K4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N3_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 8.930e-46
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = -2 
Query:    6 FKYAKRQILADGIGKNTARRVAVGDTAAMLDITAGFTPEKKTSKKAKA---WRTGDEPERSEAFLVLLCCHMANDSTFQGRVDCFTQKSRLSSEDKSTRPDLKWYRDIAADMVNVDFVDDYGNAISFPSNHANDDP 404
            +K  +R++LAD + K   R++A G+T+A+  I AGFTPE KT KK KA    +TGDEPER E FLVLLCCH+ANDSTF+G  DCFTQKSRLS EDK   P  KWYR IA DMVN+++ DD+GNAIS P NH+ D+P
Sbjct:  187 YKSLRRELLADAVDKCIKRKIAEGETSALKKIPAGFTPE-KTVKKGKAPAAGKTGDEPERKENFLVLLCCHLANDSTFEGFQDCFTQKSRLSLEDKKHNPKKKWYRHIARDMVNLEYKDDHGNAISVPVNHSYDNP 321
[Close]
BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Match: A0A6H5KBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.330e-20
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = -2 
Query:    6 FKYAKRQILADGIGKNTARRVAVGDTAAMLDITAGFTPEKKTSKKAKAWRTGDEPERSEAFLVLLCCHMANDSTFQGRVDCFTQKSRLSSEDKSTRPDLKWYRDIAADMVNVDFVDDYGNAISFPSNHANDDP 404
            +   K  +LA+ + K    +V +G   A+     G TPEK  +K  K  +T  +PER   FLVLL CH+ NDSTF G +     K+R   +D S     K+Y  +A DM+++DF DD+GN IS P +H++D P
Sbjct:   77 YNSEKVVVLANSLDKYWDWQVEIGKHGALRSWYQGTTPEKSVAK-GKGGKTSADPERKPHFLVLLVCHLGNDSTFNGFLKLCEPKTRHDVKDPSNSDAAKFYMALARDMLDLDFKDDHGNEISIPVSHSHDKP 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4N3_9PHAE8.930e-4661.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH9_9PHAE2.330e-2039.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5486contigL-elsbetiae_contig5486:2755..3159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.2571006-UTR-L-elsbetiae_contig5486:2754..28321622816575.2571006-UTR-L-elsbetiae_contig5486:2754..2832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5486 2755..2832 +
1691683658.131378-UTR-L-elsbetiae_contig5486:2754..28321691683658.131378-UTR-L-elsbetiae_contig5486:2754..2832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5486 2755..2832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.268444-CDS-L-elsbetiae_contig5486:2832..31591622816575.268444-CDS-L-elsbetiae_contig5486:2832..3159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 2833..3159 +
1691683658.1418352-CDS-L-elsbetiae_contig5486:2832..31591691683658.1418352-CDS-L-elsbetiae_contig5486:2832..3159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 2833..3159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5486.13748.1prot_L-elsbetiae_contig5486.13748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5486 2833..3159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5486.13748.1

>prot_L-elsbetiae_contig5486.13748.1 ID=prot_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MSAAMSRYHFKSGLVLLSSDDRRLFCVKQSTLPWNVESFAMWQHSRTRKA
SLRSGSSPVLQALAFFEVFFSGVKPAVISSMAAVSPTATLLAVFLPIPSA
RICLFAYLK
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mRNA from alignment at L-elsbetiae_contig5486:2755..3159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5486.13748.1 ID=mRNA_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=405bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:2755..3159+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGGATCGTCGTTGGCGTGATTGGAGGGGAAGGAGATGGCGTTCCC
GTAATCGTCGACGAAGTCCACGTTGACCATGTCGGCCGCGATGTCTCGGT
ACCACTTCAAGTCCGGTCTCGTACTTTTGTCTTCGGATGACAGGCGACTC
TTCTGCGTGAAACAGTCGACCCTCCCTTGGAACGTAGAATCGTTCGCCAT
GTGGCAGCACAGCAGGACGAGGAAGGCCTCGCTGCGCTCGGGCTCGTCCC
CGGTCCTCCAAGCTTTGGCCTTCTTTGAGGTCTTCTTCTCTGGGGTGAAG
CCAGCCGTAATATCGAGCATGGCTGCCGTGTCACCGACGGCCACCCTTCT
CGCGGTGTTCTTGCCGATACCGTCGGCAAGAATCTGCCTCTTCGCATATT
TGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5486:2755..3159+

>mRNA_L-elsbetiae_contig5486.13748.1 ID=mRNA_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:2755..3159+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCCGCGATGTCTCGGTACCACTTCAAGTCCGGTCTCGTACTTTT
GTCTTCGGATGACAGGCGACTCTTCTGCGTGAAACAGTCGACCCTCCCTT
GGAACGTAGAATCGTTCGCCATGTGGCAGCACAGCAGGACGAGGAAGGCC
TCGCTGCGCTCGGGCTCGTCCCCGGTCCTCCAAGCTTTGGCCTTCTTTGA
GGTCTTCTTCTCTGGGGTGAAGCCAGCCGTAATATCGAGCATGGCTGCCG
TGTCACCGACGGCCACCCTTCTCGCGGTGTTCTTGCCGATACCGTCGGCA
AGAATCTGCCTCTTCGCATATTTGAAGATGTCGGCCGCGATGTCTCGGTA
CCACTTCAAGTCCGGTCTCGTACTTTTGTCTTCGGATGACAGGCGACTCT
TCTGCGTGAAACAGTCGACCCTCCCTTGGAACGTAGAATCGTTCGCCATG
TGGCAGCACAGCAGGACGAGGAAGGCCTCGCTGCGCTCGGGCTCGTCCCC
GGTCCTCCAAGCTTTGGCCTTCTTTGAGGTCTTCTTCTCTGGGGTGAAGC
CAGCCGTAATATCGAGCATGGCTGCCGTGTCACCGACGGCCACCCTTCTC
GCGGTGTTCTTGCCGATACCGTCGGCAAGAATCTGCCTCTTCGCATATTT
GAAG
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