Homology
BLAST of mRNA_L-elsbetiae_contig5486.13747.1 vs. uniprot
Match: A0A6H5K4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 8.830e-26 Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 Query: 1 MVNVDFVDDYGNAISFPSNHANDDPAAPASLHEALDSVNLGLSKRELHARYGEDTTPLENVLSDWLLCLASENTDVLRKTDLSGGFGADEAQDGSG 288
MVN+++ DD+GNAIS P NH+ D+P AP L EALD ++ +KREL+A YGEDT+PLE + WL LA ENT+++RK D SGG GAD A D G
Sbjct: 297 MVNLEYKDDHGNAISVPVNHSYDNPEAPEELFEALDGIDFERTKRELNALYGEDTSPLERQVPVWLRYLAGENTELIRKRDASGGVGADAADDDEG 392
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 293 |
Cds size | 291 |
Stop | 0 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816575.2118692-CDS-L-elsbetiae_contig5486:1589..1658 | 1622816575.2118692-CDS-L-elsbetiae_contig5486:1589..1658 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5486 1590..1658 - |
1691683658.0948756-CDS-L-elsbetiae_contig5486:1589..1658 | 1691683658.0948756-CDS-L-elsbetiae_contig5486:1589..1658 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5486 1590..1658 - |
1622816575.2219617-CDS-L-elsbetiae_contig5486:2612..2834 | 1622816575.2219617-CDS-L-elsbetiae_contig5486:2612..2834 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5486 2613..2834 - |
1691683658.1134613-CDS-L-elsbetiae_contig5486:2612..2834 | 1691683658.1134613-CDS-L-elsbetiae_contig5486:2612..2834 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5486 2613..2834 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5486.13747.1 >prot_L-elsbetiae_contig5486.13747.1 ID=prot_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MVNVDFVDDYGNAISFPSNHANDDPAAPASLHEALDSVNLGLSKRELHAR YGEDTTPLENVLSDWLLCLASENTDVLRKTDLSGGFGADEAQDGSGG back to topmRNA from alignment at L-elsbetiae_contig5486:1590..2834- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5486.13747.1 ID=mRNA_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1245bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:1590..2834- (Laminarionema elsbetiae ELsaHSoW15) ATGGTCAACGTGGACTTCGTCGACGATTACGGGAACGCCATCTCCTTCCC
CTCCAATCACGCCAACGACGATCCAGCGGCACCAGCGTCGTTGCACGAAG
CCCTTGACTCCGTCAACCTCGGGCTCAGCAAGCGCGAACTCCATGCGCGA
TACGGCGAGGACACGACTCCGCTGGAAAACGTGCTCAGCGACTGGCTCCT
CTGCTTGGCGTCGGAGAACACGGTGAGAATAACCTTGGAGCGAAAATCCT
CGATGCCGCCCGTACGGGACGTTACGTTTCTTCGTTTTTTTGTTCTACAG
TTCTATTGCGGATTGTACAATCCCTTGAAGACGCTTACTTTTATTTTCGC
CCCTCTACCTTTGAGAACGCCCCAGGGCGTTATTTTTTCGCTCAAGTTTC
CTTTTTTCCCCCGGGGGGTGGGCGGGGAGAGGGTGTCACAGGACAGTGCT
CCAACAGCTGCTGTTTGCTGTCTGTTGTTGTTTGAGGCGAGTTTTGTTTT
ATTTTTTGCCCGTAGATGTACTTCACCCCCGACATCGTGACGACCCCAAA
GCGTTGTTGTGTGTGTGTTGGCAAGGAAAAAAAAAAACGCCCACGAGGAC
ATATGTTACCCCTGTGTGTGTGTGTGTGTTGTCTTCACATCAAAAACCGT
TCCGATCTTTCTATCCAGTACACCTCCATGAGTCCGTACTAATCCAACAC
TGACGCAGTCGATTCCCGTGGTCACAGGATAATTCACCCTAAAAAGGGTA
CATAGACAGCTACTGAAACATGAAAATAAATAAAATGGACCTGAAGGGTC
CACAAAACACAAACACAAAAGATCAAGACACAGATAGTCTGGAGTCCTCC
GCTCCCCTCTACACGCTATGTGAGGCGAACACAAAAGTGGACAAGCCAAC
ATCACCAACCGCGGGGGGATACACCCCTGATTCTATCGCCTCTGGGCTTT
TTTTATTGTTTTGTGGAAATACTGCCTTTGAGAATACCGGGCGTTCTTTT
TAACTTCAAAATATAGATCGTCCCCGAGGGCGTGCTCAAAATATTACACC
GTCATCACTCATAAAATGTATGTGTCTGTGGTCAGGATTGGTTCCGATTT
CCTTCTTACCTGCTCGCTCCCCTTCCTTATGGCTCCCACTTCAACCGCCG
GCCCCGTCGAACCCTCACGTGTTTAGGACGTGCTGCGCAAAACAGACCTG
AGCGGCGGTTTCGGGGCGGACGAGGCCCAAGACGGTTCAGGCGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5486:1590..2834- >mRNA_L-elsbetiae_contig5486.13747.1 ID=mRNA_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:1590..2834- (Laminarionema elsbetiae ELsaHSoW15) ATGGTCAACGTGGACTTCGTCGACGATTACGGGAACGCCATCTCCTTCCC CTCCAATCACGCCAACGACGATCCAGCGGCACCAGCGTCGTTGCACGAAG CCCTTGACTCCGTCAACCTCGGGCTCAGCAAGCGCGAACTCCATGCGCGA TACGGCGAGGACACGACTCCGCTGGAAAACGTGCTCAGCGACTGGCTCCT CTGCTTGGCGTCGGAGAACACGATGGTCAACGTGGACTTCGTCGACGATT ACGGGAACGCCATCTCCTTCCCCTCCAATCACGCCAACGACGATCCAGCG GCACCAGCGTCGTTGCACGAAGCCCTTGACTCCGTCAACCTCGGGCTCAG CAAGCGCGAACTCCATGCGCGATACGGCGAGGACACGACTCCGCTGGAAA ACGTGCTCAGCGACTGGCTCCTCTGCTTGGCGTCGGAGAACACGGACGTG CTGCGCAAAACAGACCTGAGCGGCGGTTTCGGGGCGGACGAGGCCCAAGA CGGTTCAGGCGGCGACGTGCTGCGCAAAACAGACCTGAGCGGCGGTTTCG GGGCGGACGAGGCCCAAGACGGTTCAGGCGGC back to top
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