mRNA_L-elsbetiae_contig5482.13745.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5482.13745.1
Unique NamemRNA_L-elsbetiae_contig5482.13745.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5482.13745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5482contigL-elsbetiae_contig5482:5595..6308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5482.13745.1prot_L-elsbetiae_contig5482.13745.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5482 5595..6290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.9857898-CDS-L-elsbetiae_contig5482:5594..57081622816574.9857898-CDS-L-elsbetiae_contig5482:5594..5708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5482 5595..5708 -
1691683657.9372509-CDS-L-elsbetiae_contig5482:5594..57081691683657.9372509-CDS-L-elsbetiae_contig5482:5594..5708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5482 5595..5708 -
1622816574.998799-CDS-L-elsbetiae_contig5482:6158..62901622816574.998799-CDS-L-elsbetiae_contig5482:6158..6290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5482 6159..6290 -
1691683657.9465656-CDS-L-elsbetiae_contig5482:6158..62901691683657.9465656-CDS-L-elsbetiae_contig5482:6158..6290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5482 6159..6290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.0116613-UTR-L-elsbetiae_contig5482:6290..63081622816575.0116613-UTR-L-elsbetiae_contig5482:6290..6308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5482 6291..6308 -
1691683657.956339-UTR-L-elsbetiae_contig5482:6290..63081691683657.956339-UTR-L-elsbetiae_contig5482:6290..6308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5482 6291..6308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5482.13745.1

>prot_L-elsbetiae_contig5482.13745.1 ID=prot_L-elsbetiae_contig5482.13745.1|Name=mRNA_L-elsbetiae_contig5482.13745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MLLGRCNPTRLGGIFCRQGWKSVALCSRGAASASPVRLLSSISKPATPTP
PTAPPTTRYNPQQARALSTQPQPGGGGGSSGG
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mRNA from alignment at L-elsbetiae_contig5482:5595..6308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5482.13745.1 ID=mRNA_L-elsbetiae_contig5482.13745.1|Name=mRNA_L-elsbetiae_contig5482.13745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig5482:5595..6308- (Laminarionema elsbetiae ELsaHSoW15)
AAGAGAAGCTGGGTTCGCATGTTGCTGGGTCGATGTAACCCCACGAGGCT
GGGCGGTATCTTCTGCCGACAAGGATGGAAGTCTGTAGCTTTGTGCTCGC
GGGGCGCCGCCAGTGCCTCGCCAGTACGCCTGCTGAGCTCAATTTCAAAG
GTGGGTCGCGGCTCCTGTGCCTCCGCGTGAAGGTACCTACCACAATCTAC
CCTGCAGTGTTTTGCGCTTAGAGACGAAAGAGCGACCCCTTGCAGCGATA
GAACGAAAGCAACCGTAGCTACGCTCGAGAAAGGGTTATCTAGTTCTATT
GGCATAAGTAGACCACAGCAGTCGCGCAGAGCAGTACTCGCTGGACCTAC
TAGACTACTAGATACAGCAGCAGTTACATGTAAAGAGCACCCCCCCCGCC
CAGTCGACGCTTGTGCACCACACTCATGTACACACACATGCACAGCATTT
GTGGCAGAACAACAAGGTAGAAGGTAGAGTAGAGTTTGCCTCTCATCCCC
AGAATTGTCCAACGCCCAAGACGGCAAAGTTGGTTCAGACACGTCACATC
TGCACACCGCACCCGCCTGAACCGCTCGCTCCGCTCTCTCCCCGGGGCAG
CCAGCGACACCAACACCTCCAACAGCACCACCAACAACGCGATACAATCC
ACAACAAGCACGAGCGCTCAGCACACAACCGCAGCCAGGCGGCGGCGGCG
GCAGCAGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5482:5595..6308-

>mRNA_L-elsbetiae_contig5482.13745.1 ID=mRNA_L-elsbetiae_contig5482.13745.1|Name=mRNA_L-elsbetiae_contig5482.13745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig5482:5595..6308- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTGGGTCGATGTAACCCCACGAGGCTGGGCGGTATCTTCTGCCG
ACAAGGATGGAAGTCTGTAGCTTTGTGCTCGCGGGGCGCCGCCAGTGCCT
CGCCAGTACGCCTGCTGAGCTCAATTTCAAAGATGTTGCTGGGTCGATGT
AACCCCACGAGGCTGGGCGGTATCTTCTGCCGACAAGGATGGAAGTCTGT
AGCTTTGTGCTCGCGGGGCGCCGCCAGTGCCTCGCCAGTACGCCTGCTGA
GCTCAATTTCAAAGCCAGCGACACCAACACCTCCAACAGCACCACCAACA
ACGCGATACAATCCACAACAAGCACGAGCGCTCAGCACACAACCGCAGCC
AGGCGGCGGCGGCGGCAGCAGCGGCGGCCCAGCGACACCAACACCTCCAA
CAGCACCACCAACAACGCGATACAATCCACAACAAGCACGAGCGCTCAGC
ACACAACCGCAGCCAGGCGGCGGCGGCGGCAGCAGCGGCGGC
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