mRNA_L-elsbetiae_contig5481.13744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5481.13744.1
Unique NamemRNA_L-elsbetiae_contig5481.13744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.440e-18
Identity = 56/94 (59.57%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:   84 VPAPSLGASRSLRRPRSLLSRHCPSAPFRRKSSSLQQRQQGEQPQCVA--PVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            +P  SL A   L+RPR L   H  +A F   +S    RQQG++    A  PVAI+GAGPAGLTLS LLSKF VPSILLE+ P LPTHPQAHFIN
Sbjct:    1 MPVSSLRAG--LKRPRPLSHHHGSAASFTNSNS----RQQGQEEGLDASTPVAIVGAGPAGLTLSTLLSKFGVPSILLERAPELPTHPQAHFIN 88
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A7S3VNI2_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VNI2_DUNTE)

HSP 1 Score: 62.8 bits (151), Expect = 4.620e-9
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  207 EQPQCVAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            +Q    APV I GAGP+GLTL+ LLS++ VPS++ E++ AL +HPQAH+IN
Sbjct:   48 KQHDLAAPVLISGAGPSGLTLALLLSRYGVPSLVFEQSKALTSHPQAHYIN 98
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A7S0SC79_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SC79_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.200e-9
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:  216 QCVAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            +   PV IIG GP GLTLS LLS+  V S+L+EK    P HPQAHFIN
Sbjct:   73 RATVPVLIIGGGPVGLTLSILLSRLGVDSLLVEKRANAPQHPQAHFIN 120
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A836CK39_9STRA (FAD binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK39_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.140e-8
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  228 PVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            PV I GAGP GLTLSALLS+  V S+LLEK   L  HPQAHFIN
Sbjct:    8 PVVICGAGPTGLTLSALLSRAGVQSVLLEKEQDLSDHPQAHFIN 51
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: W7TPL4_9STRA (Aromatic-ring hydroxylase-like protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.940e-8
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:  225 APVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            APV I GAGP GLTLSALLS+  V +++ EK   L  HPQAHFIN
Sbjct:   10 APVLIAGAGPVGLTLSALLSRCGVQNVIFEKNAELSQHPQAHFIN 54
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A6P6BGP7_DURZI (2,4-dichlorophenol 6-monooxygenase isoform X1 n=4 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6BGP7_DURZI)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-7
Identity = 29/46 (63.04%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:  222 VAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            V PV I+GAGP GL LS LLSKF V   +LEK      HPQAHFIN
Sbjct:   45 VLPVLIVGAGPVGLVLSVLLSKFGVKCTVLEKNKGFSKHPQAHFIN 90
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: C1EJA0_MICCC (FAD_binding_3 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJA0_MICCC)

HSP 1 Score: 58.2 bits (139), Expect = 2.060e-7
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  228 PVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            PV I+GAGP GLTLSALLS+F V  ++ E+     THPQAHF+N
Sbjct:   63 PVLIVGAGPVGLTLSALLSRFGVDHLVCERRARPSTHPQAHFVN 106
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A7S0NM44_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NM44_MICPS)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-7
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  228 PVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            PV I+GAGP GLTLSALLS+F V  ++ E+     THPQAHF+N
Sbjct:  317 PVLIVGAGPVGLTLSALLSRFGVDHLVCERRARPSTHPQAHFVN 360
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BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A2U1LT67_ARTAN (Aromatic-ring hydroxylase-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LT67_ARTAN)

HSP 1 Score: 56.6 bits (135), Expect = 5.900e-7
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:  210 QPQCVAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            Q   + PV I+GAGP GL LSALL+K  V   +LE++     HPQAHFIN
Sbjct:   40 QNDAILPVLIVGAGPVGLVLSALLTKLGVKCAVLERSTTFSKHPQAHFIN 89
[Close]
BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Match: A0A2U1QB29_ARTAN (FAD/NAD(P)-binding oxidoreductase family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QB29_ARTAN)

HSP 1 Score: 56.6 bits (135), Expect = 7.000e-7
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:  210 QPQCVAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQAHFIN 359
            Q   + PV I+GAGP GL LSALL+K  V   +LE++     HPQAHFIN
Sbjct:   40 QNDAILPVLIVGAGPVGLVLSALLTKLGVKCAVLERSTTFSKHPQAHFIN 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5481.13744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FML8_ECTSI2.440e-1859.57Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7S3VNI2_DUNTE4.620e-956.86Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S0SC79_9CHLO5.200e-960.42Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A836CK39_9STRA2.140e-870.45FAD binding domain-containing protein n=1 Tax=Trib... [more]
W7TPL4_9STRA7.940e-864.44Aromatic-ring hydroxylase-like protein n=3 Tax=Nan... [more]
A0A6P6BGP7_DURZI1.090e-763.042,4-dichlorophenol 6-monooxygenase isoform X1 n=4 ... [more]
C1EJA0_MICCC2.060e-761.36FAD_binding_3 domain-containing protein n=1 Tax=Mi... [more]
A0A7S0NM44_MICPS2.090e-761.36Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A2U1LT67_ARTAN5.900e-754.00Aromatic-ring hydroxylase-like protein n=1 Tax=Art... [more]
A0A2U1QB29_ARTAN7.000e-754.00FAD/NAD(P)-binding oxidoreductase family protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5481contigL-elsbetiae_contig5481:5270..5628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.7e-17
Seed eggNOG ortholog2880.D7FML8
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.9256716-UTR-L-elsbetiae_contig5481:5269..53131622816574.9256716-UTR-L-elsbetiae_contig5481:5269..5313Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5481 5270..5313 +
1691683657.914031-UTR-L-elsbetiae_contig5481:5269..53131691683657.914031-UTR-L-elsbetiae_contig5481:5269..5313Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5481 5270..5313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.9432285-CDS-L-elsbetiae_contig5481:5313..56281622816574.9432285-CDS-L-elsbetiae_contig5481:5313..5628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5481 5314..5628 +
1691683657.9286377-CDS-L-elsbetiae_contig5481:5313..56281691683657.9286377-CDS-L-elsbetiae_contig5481:5313..5628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5481 5314..5628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5481.13744.1prot_L-elsbetiae_contig5481.13744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5481 5314..5628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5481.13744.1

>prot_L-elsbetiae_contig5481.13744.1 ID=prot_L-elsbetiae_contig5481.13744.1|Name=mRNA_L-elsbetiae_contig5481.13744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MLGQCMSLGNSLRVPAPSLGASRSLRRPRSLLSRHCPSAPFRRKSSSLQQ
RQQGEQPQCVAPVAIIGAGPAGLTLSALLSKFEVPSILLEKTPALPTHPQ
AHFIN
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mRNA from alignment at L-elsbetiae_contig5481:5270..5628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5481.13744.1 ID=mRNA_L-elsbetiae_contig5481.13744.1|Name=mRNA_L-elsbetiae_contig5481.13744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=359bp|location=Sequence derived from alignment at L-elsbetiae_contig5481:5270..5628+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAAAGAGGACTTCTCTGAGAGGCCCACCTTCGCGACAAAGCCATGTTA
GGGCAGTGCATGTCTCTAGGCAATAGCCTACGCGTTCCGGCACCTTCTCT
TGGTGCCAGCCGAAGCCTCAGGCGCCCTCGCTCGCTGCTTAGTCGTCATT
GTCCTTCTGCGCCTTTCCGCCGCAAGAGCAGCAGTCTGCAGCAGAGGCAG
CAGGGGGAGCAACCTCAGTGCGTTGCTCCAGTGGCTATCATTGGAGCCGG
ACCGGCTGGCCTGACTCTCTCCGCTTTGCTCTCAAAGTTTGAGGTCCCCT
CCATCTTGCTGGAGAAAACTCCGGCGCTGCCTACCCACCCTCAGGCTCAC
TTCATCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5481:5270..5628+

>mRNA_L-elsbetiae_contig5481.13744.1 ID=mRNA_L-elsbetiae_contig5481.13744.1|Name=mRNA_L-elsbetiae_contig5481.13744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5481:5270..5628+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAGGGCAGTGCATGTCTCTAGGCAATAGCCTACGCGTTCCGGCACC
TTCTCTTGGTGCCAGCCGAAGCCTCAGGCGCCCTCGCTCGCTGCTTAGTC
GTCATTGTCCTTCTGCGCCTTTCCGCCGCAAGAGCAGCAGTCTGCAGCAG
AGGCAGCAGGGGGAGCAACCTCAGTGCGTTGCTCCAGTGGCTATCATTGG
AGCCGGACCGGCTGGCCTGACTCTCTCCGCTTTGCTCTCAAAGTTTGAGG
TCCCCTCCATCTTGCTGGAGAAAACTCCGGCGCTGCCTACCCACCCTCAG
GCTCACTTCATCAACATGTTAGGGCAGTGCATGTCTCTAGGCAATAGCCT
ACGCGTTCCGGCACCTTCTCTTGGTGCCAGCCGAAGCCTCAGGCGCCCTC
GCTCGCTGCTTAGTCGTCATTGTCCTTCTGCGCCTTTCCGCCGCAAGAGC
AGCAGTCTGCAGCAGAGGCAGCAGGGGGAGCAACCTCAGTGCGTTGCTCC
AGTGGCTATCATTGGAGCCGGACCGGCTGGCCTGACTCTCTCCGCTTTGC
TCTCAAAGTTTGAGGTCCCCTCCATCTTGCTGGAGAAAACTCCGGCGCTG
CCTACCCACCCTCAGGCTCACTTCATCAAC
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