mRNA_L-elsbetiae_contig5477.13741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5477.13741.1
Unique NamemRNA_L-elsbetiae_contig5477.13741.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5477.13741.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.760e-27
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:    2 YSPSAVIELLITVSVEFAIHRWTSVYVPRKYEPEIAEFVKEHGVDLGIPICPCTPEQEKWEDVAAERRK 208
            +SP AVIELLITVSVEFAIHRWTSVYVPR+YEPEI EFVKE+G  LGIP  PCT +Q+KWE++AA++RK
Sbjct:  428 FSPPAVIELLITVSVEFAIHRWTSVYVPRRYEPEIDEFVKEYGPALGIPHSPCTADQQKWEEIAAQKRK 496
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BLAST of mRNA_L-elsbetiae_contig5477.13741.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.790e-18
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:    2 YSPSAVIELLITVSVEFAIHRWTSVYVPRKYEPEIAEFVKEHGVDLGI-PICPCTPEQEKWEDVAAERR 205
            YSP+ VIEL+ TVS+ F  HRWT++Y+PR+YEPE+ +FV+EHG  LGI P  PCT +Q  WE +A E R
Sbjct:  349 YSPAGVIELIATVSLAFMYHRWTAIYMPREYEPEVLKFVQEHGAALGIDPERPCTKDQSTWEGIAKEAR 417
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BLAST of mRNA_L-elsbetiae_contig5477.13741.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.310e-13
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 2 
Query:    2 YSPSAVIELLITVSVEFAIHRWTSVYVPRKYEPEIAEFVKEHGVDLGI-PICPCTPEQEKWEDVAAERR 205
            Y+P+ VIEL+ T+S+   + RWTS+Y+P++YEPE+  FV+E+G  L + P  PCT EQ  W ++AAE R
Sbjct:  176 YTPAGVIELVNTLSLVSMLQRWTSIYMPKQYEPEVLVFVEENGSALSLDPTKPCTEEQSGWRELAAEIR 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5477.13741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE3.760e-2776.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN7_ECTSI3.790e-1857.97Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5G2_ECTSI3.310e-1349.28Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5477contigL-elsbetiae_contig5477:363..2505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5477.13741.1prot_L-elsbetiae_contig5477.13741.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5477 363..2326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.7566574-CDS-L-elsbetiae_contig5477:362..4521622816574.7566574-CDS-L-elsbetiae_contig5477:362..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 363..452 +
1691683657.8141513-CDS-L-elsbetiae_contig5477:362..4521691683657.8141513-CDS-L-elsbetiae_contig5477:362..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 363..452 +
1622816574.7701373-CDS-L-elsbetiae_contig5477:2134..23261622816574.7701373-CDS-L-elsbetiae_contig5477:2134..2326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 2135..2326 +
1691683657.824047-CDS-L-elsbetiae_contig5477:2134..23261691683657.824047-CDS-L-elsbetiae_contig5477:2134..2326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 2135..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.7844236-UTR-L-elsbetiae_contig5477:2326..25051622816574.7844236-UTR-L-elsbetiae_contig5477:2326..2505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5477 2327..2505 +
1691683657.8337858-UTR-L-elsbetiae_contig5477:2326..25051691683657.8337858-UTR-L-elsbetiae_contig5477:2326..2505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5477 2327..2505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5477.13741.1

>prot_L-elsbetiae_contig5477.13741.1 ID=prot_L-elsbetiae_contig5477.13741.1|Name=mRNA_L-elsbetiae_contig5477.13741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
VLPFRGDRAAHYRLGRVRHPQVDFGLRSSKVRAGDRRVCEGAWSGPWDPY
LSVHAGAGEVGRRRRGKEEEVKERSKRPIEQQFFFEKQKTKRG*
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mRNA from alignment at L-elsbetiae_contig5477:363..2505+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5477.13741.1 ID=mRNA_L-elsbetiae_contig5477.13741.1|Name=mRNA_L-elsbetiae_contig5477.13741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2143bp|location=Sequence derived from alignment at L-elsbetiae_contig5477:363..2505+ (Laminarionema elsbetiae ELsaHSoW15)
GTACTCCCCTTCCGCGGTGATCGAGCTGCTCATTACCGTCTCGGTCGAGT
TCGCCATCCACAGGTGGACTTCGGTCTACGTTCCTCGAAAGTGAGAGCCC
ACACATATGTGTATGTTGAACCTCCATGTACATGCACGGGGTGGAATTTG
TTGTTGTTGAATTTACAATAGCTCTCTATGACTACGGCCCCCCAAGGATG
TTTTTGGACCAAAGCAAGGCACACTCGACGCCGCTGAAGGAAGGAAGGGT
AAAACAAACACAACCATGGTGCAAACACGAGGGAGAGGGAGCCCTCTTCG
CGATAAAATTCTAATAAAAAAATTGTTAAAAATACTTTTTTTTATTTCTA
AATTTTTAGTAGGAAAAAAATATTATTATTTAAACAGTCTTTAAAAAAAA
CTTTAGCATTTTCATGCAAACCCATATTATTTTTTCGACTTTTAAACTTA
CCTAAAAAATCCATTTCAAAATATTCTATTAAATTTTGAATATTAACACT
TTTAAAATCTAATTTTAAAGTTATATTATCCGCGGAGGGTGGGAGTGGGG
GCCTCGGGGATAGGGGTCCTTCTGTGTGACCACGGTTCAGTACTCTAGGT
AGCAAGAAACCCTCACGTGGCAAGCAAGGAGCCAGCCCGTCGAGCACTGG
GAATAAACGCGAAAACAAAGTTCGGTGTCTATTTATTTATCGAGGACCTT
ATTTCACGCTTTTAAGCGGTGAAAATCGTGATACCTTTTCCATTTTCCCT
TGGTACGAAGGGGCTCATGCTTTTGTTCTCCTTTCAAGCCACGAAGAGAG
CCCCAAGGCAACAAGCACCTATGCAGCCGAGAGTGACTGAAGGAGTGATA
CCCATCCCCACCTACACCGTGTAGCGTGTAACATGGTGTGCGTCGAGGTG
TAAAGGCGTACTCGATCCAGGGGAAGCCATATAGTCCGCGTTAAAAGCGG
AGCATGGATGCTTTTCCTCCCGATGTGGACAAGACCCTGCGCAGCGGAAG
TGGCGCTTGGCTTCTGCATCGGTTGTTAGTTAGCCCGTAAGCCGCAGACG
GGCTGGATTTGGATCCGCCTTCCGCTGGTTCGTTAGGGGCGGAGAGGAAA
ATCTTCCGGGGTCTTTTGGCTTGAGTGGTTTTCACTTTTTACCACTTTTT
TTTGGTCTTGTGTTTTTTTTTTTAGTATTTTTTGTTGCCACGCGTAAGGT
GCAACCCGCTGTCGGGTTACGGTTAAACTTGTGCTGAAGCAAGGGTGCAC
AATACCCACTGACGGCGGACTGTTAGCTCAGTGGCTTGACTGTTATGTTA
GCCCCTGTGGGTATCGTGCACACCTCAACTCACACACGTTGCTGCTGAGG
GCTCATTCAACCCTCAGCAGGTTTGTCGCCCAAAGCCCCTCCTCGGTGAT
CTCTCCCTCAGCCATGATGTGTTGACTGCGGACCAGGGGCGAGCCGGAGC
CGGGCCCGCCTTAAGTCTTTCGCCGCTTTTTTTTTTTTTACGTTTTTACG
ACGTGCTGCTCTCCGAGCTTCACCACAGACGCGGACATACGACGCGTTTG
GGTGCGGCCGAGTTGTGGCGTGCATGCATGCCCCTTGGTTCTGCTGCGGC
GCTCTCTTTCTCTCTCCGCTCACCGAAGTCTCTTGTGCATGCATGGATGG
ATGGGCACACACACACACACACCATTGCGCTGCTGCCTTCTTCTATATTT
GCAAGAGCCCAGTTTGAATGAGCTTGTGCCCAAAGCTCAAAACCGTTCGT
ATGGATGTTCCGTTGTCGGCAGGTACGAGCCGGAGATCGCCGAGTTTGTG
AAGGAGCATGGAGTGGACCTTGGGATCCCTATCTGTCCGTGCACGCCGGA
GCAGGAGAAGTGGGAAGACGTCGCCGCGGAAAGGAGGAAGAAGTGAAGGA
AAGAAGCAAGCGGCCCATCGAACAGCAGTTCTTTTTCGAAAAACAGAAGA
CGAAACGGGGATAACAACCCCAACACGTCCACGACCCGTGGGCTTAACGG
GGAGTACAATAGTATACTAATAAGAGACGACACAGGCATCACCACCTGCA
AAGCATAAAAGCGCCGTGTATTGTACGGATCCCGTACGCGACAAAACAGG
GTTTGGTTTTTTTATCGGTATCTGTTTTGCAAATCAATCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5477:363..2505+

>mRNA_L-elsbetiae_contig5477.13741.1 ID=mRNA_L-elsbetiae_contig5477.13741.1|Name=mRNA_L-elsbetiae_contig5477.13741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig5477:363..2505+ (Laminarionema elsbetiae ELsaHSoW15)
GTACTCCCCTTCCGCGGTGATCGAGCTGCTCATTACCGTCTCGGTCGAGT
TCGCCATCCACAGGTGGACTTCGGTCTACGTTCCTCGAAAGTACTCCCCT
TCCGCGGTGATCGAGCTGCTCATTACCGTCTCGGTCGAGTTCGCCATCCA
CAGGTGGACTTCGGTCTACGTTCCTCGAAAGTACGAGCCGGAGATCGCCG
AGTTTGTGAAGGAGCATGGAGTGGACCTTGGGATCCCTATCTGTCCGTGC
ACGCCGGAGCAGGAGAAGTGGGAAGACGTCGCCGCGGAAAGGAGGAAGAA
GTGAAGGAAAGAAGCAAGCGGCCCATCGAACAGCAGTTCTTTTTCGAAAA
ACAGAAGACGAAACGGGGATAAGTACGAGCCGGAGATCGCCGAGTTTGTG
AAGGAGCATGGAGTGGACCTTGGGATCCCTATCTGTCCGTGCACGCCGGA
GCAGGAGAAGTGGGAAGACGTCGCCGCGGAAAGGAGGAAGAAGTGAAGGA
AAGAAGCAAGCGGCCCATCGAACAGCAGTTCTTTTTCGAAAAACAGAAGA
CGAAACGGGGATAA
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