mRNA_L-elsbetiae_contig5475.13740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5475.13740.1 vs. uniprot
Match: D7G850_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G850_ECTSI) HSP 1 Score: 804 bits (2077), Expect = 9.060e-284 Identity = 471/707 (66.62%), Postives = 530/707 (74.96%), Query Frame = 1 Query: 1 QGMASESDVIILSCLTKPPATAAATAAVRSALQRVIVRTPSATICNSGPGGLAXXXXXXXXXVAAPNLRAIFPSAHSAVVDSSLLRAFTVTRARTILAGLSTPTAGGRVRELPTVVAGVAAGPAGLCFLGQRVTSEGFSAFSIRRESESEGGERGAEVAAVAAAGG--QALRIDDLIHDFGSHAQASARALYDLWGTSNGDVLAAALQDGGTSDPFARLATEWDCSSHATRTLGSPPPPACSSLLLIGGECPPSPVSLALRASIETLSSAAAMGQSATPQARRKANGPFGGGVGSSAGVDTPASGSCGDASLEAERQEQLRWREELQALLSGSENMAELAARPGGGTARAGDGNSDDGSEASQGVEEDTAVQERKDGGGLGEEESGPGRQEPAEKLRGDLDFSERLWELTARATDVESVRSAVSSAFDAVGDGQIFPVISRDNKTAAGSHIRDGVALAREARYRDGTSVGVGMRRDEAKAKAWRERGAAMLADTETLARAFVELGVHKVSRDLLHGLEVHAGVLAADVNRVLP-----AAASDRPSSGDGXXXXXXXXXXDRRLDRLLTLADTLDLVALAQSYGAPWRQLAHPVFWELYLEPTRGNGVGSSTASGLETVSYTIANAGLFQLKGVDEPPMLSGEAARAAQAALRGVAEHLIPEVLSSVTGVESFGELKRRQLDLRTKGASTRDDAAVVFVCDHRFTPW 2100 +GMASESDVIILSCLTK PA A +AVRSALQ V+VR PS T + GPGG A AP LRAI PS++SAVVDS+LLRAFT TRAR ILAGL+ P AGG R LPTVVAGV+ P GLCFLGQR T EG S+FS RR+SE E AAGG QALRIDDL+ ++G A ASARALYDLWG S+GD L LQ+G S+PFARLATEWDCS+HATRTLGS PPPACSSLLLIGGECPP+ VS +R +IE L +A G +A QARRKA GPFGG G + + G+ AS + E QE+ RW E+LQALLSGSENMAE AA+P G G SDD EA + EEDTAVQ+R DGGG+GEEE G G QE EK+RGDLDFSERLWEL ARATDVE VRSAV+ AFDAVG+GQ+FPVISRD+KTA G HIRDGVA+AREARY+DGTS +G DEAKA+AWRERG+A+LAD ++LA AFVELGVHKV+RDLLH LE +AGVLAADV+R LP AAA DRP+ G G DRRLDRLLTLADTLDLVALAQSYGAPWRQLAHPVFWELYLEP G+GVG + +ETVSYT+ANAGLFQL G+DEPP LSGEAARAAQAAL G LIPEVLSSVTG ESF ELKRR L+ + KGA+ DA VFVC+H F PW Sbjct: 70 KGMASESDVIILSCLTKAPAAGEAASAVRSALQHVVVRPPSVTTHSPGPGGRAAAAGGVG---VAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPTVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQE------------AAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKSNPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGNIEALKTAVERG-AAPQQARRKAKGPFGGEKGGTGRAEAHPGGAS--ASGDGEEQERRRWDEDLQALLSGSENMAEFAAKPV--DVPVGGGGSDDTLEAGR-AEEDTAVQDRTDGGGVGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVEGVRSAVALAFDAVGEGQMFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSGCLG---DEAKAEAWRERGSALLADEDSLASAFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPDTAAAAAAGDRPAPGTGGSAAG-----DRRLDRLLTLADTLDLVALAQSYGAPWRQLAHPVFWELYLEPAGGSGVGGA----METVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSGCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGATVGGDA--VFVCEHSFIPW 741
BLAST of mRNA_L-elsbetiae_contig5475.13740.1 vs. uniprot
Match: A0A6H5L254_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L254_9PHAE) HSP 1 Score: 761 bits (1965), Expect = 2.970e-263 Identity = 461/749 (61.55%), Postives = 517/749 (69.03%), Query Frame = 1 Query: 1 QGMASESDVIILSCLTKPPATAAATAAVRSALQRVIVRTPSATICNSGPGGLAXXXXXXXXXVAAPNLRAIFPSAHSAVVDSSLLRAFTVTRARTILAGLSTPTAGGRVRELPTVVAGVAAGPAGLCFLGQRVTSEGFSAFSIRRESESEGGERGAEVAAVAAAGG--QALRIDDLIHDFGSHAQASARALYDLWGTSNGDVLAAALQDGGTSDPFARLATEWDCSSHATRTLGSPPPPACSSLLLIGGECPPSPVSLALRASIETLSSAAAMGQSATPQARRKANGPFGGGVGSSAGVDTPASGSCGDASLEAERQEQLRWREELQALLSGSENMAELAARPGGGTARAGDGNSDDGSEASQGVEEDTAVQERKDGGGLGEEESGPGRQEPAEKLRGDLDFSERLWELTARATDVESVRSAVSSAFDAVGDGQIFPVISRDNKTAAGSHIRDGVALAREARYRDGTSVGVGMRRDEAKAKAWRERGAAMLADTETLARAFVELGVHKVSRDLLHGLEVHAGVLAADVNRVLPAAAS----DRPSSGDGXXXXXXXXXXDRRLDRLLTLADTLDLVALAQSYGAPWRQ-------------------------------------------LAHPVFWELYLEPTRGNGVGSSTASGLETVSYTIANAGLFQLKGVDEPPMLSGEAARAAQAALRGVAEHLIPEVLSSVTGVESFGELKRRQLDLRTKGASTRDDAAVVFVCDHRFTPW 2100 +GMASESDVIILSCLTK P A +AVRSALQ V+VR PS T + GPGG A AP LRAI PS++SAVVDS+LLRAFT TRAR ILAGL+ P A G R LPTVV GV+ P GLCFLGQR T EG S+FS RR+SE E AAGG QALRIDDL+ ++G A ASARALYDLWG S+GD L LQ+G PFARLATEWDCS+HATRTLGS PPPACSSLLLIGGECPP+ VS +R I+ L +A G A Q RRK GPFGGG G + + G+C A + E QE+ RW E+LQALLSGSENMAE AA+P G G SDD EA + EEDTAVQ+R DGGGLGEEE G G QE EK+RGDLDFSERLWEL ARATDV+ VRSAV+ AF+AVG+GQIFPVISRD+KTA G HIRDGVA+AREARY+DGTS +G DEAKA+AWRERG+A+LAD + LA FVELGVHKV+RDLLH LE +AGVLAADV+R LPAAA+ D+P+ G G DRRLDRLLTLADTLDLVALAQSYGAPWRQ LAHPVFWELYLEP G+GVG + +ETVSYT+ANAGLFQL +DEPP LSGEAARAAQAAL LIPEVLSSVTG ESF ELKRR L + GAS DA VFVC+H F PW Sbjct: 70 KGMASESDVIILSCLTKAPTAGEAASAVRSALQHVVVRPPSVTTHSPGPGGRAAAAGGVG---VAPALRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAEGESRTLPTVVVGVSGAPDGLCFLGQRATPEGHSSFSFRRDSEQE------------AAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKLSPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGDIDVLKTAVERGV-APQQTRRKTKGPFGGGRGDTGRDEALPGGTC--APGDGEEQERRRWDEDLQALLSGSENMAEFAAKPV--DVPVGGGGSDDALEAGR-AEEDTAVQDRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVKGVRSAVALAFNAVGEGQIFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSACLG---DEAKAEAWRERGSALLADEDALASVFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPAAAAAAVGDKPAPGTGGSAAR-----DRRLDRLLTLADTLDLVALAQSYGAPWRQVRSLALSGLTALQRPPVAGPPPSSSPVFSLGLPKPIPPCARCKLAHPVFWELYLEPAGGSGVGGA----METVSYTLANAGLFQLSRLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLMHKANGASVAGDA--VFVCEHSFIPW 783
BLAST of mRNA_L-elsbetiae_contig5475.13740.1 vs. uniprot
Match: A0A836C9H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H3_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.990e-10 Identity = 108/398 (27.14%), Postives = 151/398 (37.94%), Query Frame = 1 Query: 619 DGGTSD-PFARLATEWDCSSHATRTLGSPPPPACSSLLLIGGECPPSPVSLALRASIETLSSAAAMGQSATPQARRKANGPFGGGVGSSAGVDTPASGSCGDASLEAERQEQLRWREELQALLSGSENMAELAARPGGGTARAGDGNSDDGSEASQGVEEDTAVQERKDGGGLGEEESGPGRQEPAEKL--RGDLDFSERLWELTARATDVESVRSAVSSAFDAVGDGQIFPVISRDNKTAAGSHIRDGVALAREARYRDGTSVGVGMRRDEAKAKAWRERGAAMLAD------TETLARAFVELGVHKVSRDLLHGLEVHAGVLAADVNRVLPAAASDRPSSGDGXXXXXXXXXXDRRLD-------------RLLTLADTLDLVALAQSYGAPWRQ 1746 +G +D P L EWDC+ R +G PP C S L++GG RA + SA T +G EQ W+ LQ LLS S + A L+ G + A +G+S A QG ++ + D G R K+ RGDLDFSERLWE+ A E + +A++ A AV G + P I N TA I + A+E +Y G S + ++A AA L + TE A VELG+HKV+ D+ H + A + D++ L GD R+ RL AD ++V LA + APW+Q Sbjct: 559 EGAAADAPTGALLCEWDCAGGRHRGVGDGPPATCRSQLIVGG-----------RAML-------------------------------SAACHTFRAG------------EQPPWQGHLQQLLSASADEAALSTF--GDESAADNGSS--AVTAGQGPDDSMLLDATLD--------IGFSRSAAPTKIAVRGDLDFSERLWEVAANMATGEEMAAALTQAAAAVRAGSLLPAIGTHNTTAVAGAIAACLRRAQEQQY-GGRSQAATLSSKRSEAAVLDAGPAAALLEGRPPSATEAAA-LLVELGLHKVANDMRHWFTLEAALSTGDLHWHLNCHVGAVDDVGDVEEHWRSPLAPHYRVXXXXXXXXXXQAIRRLSLAADAAEVVTLAAACSAPWQQ 888
BLAST of mRNA_L-elsbetiae_contig5475.13740.1 vs. uniprot
Match: A0A7S3YDZ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDZ2_HETAK) HSP 1 Score: 63.9 bits (154), Expect = 6.890e-9 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 1183 RGDLDFSERLWELTARATDVESVRSAVSSAFDAVGDGQIFPVISRDNKTAAGSHIRDGVALAREARY 1383 R DLDF+E+LW++ E V F A+ +G IFPVI RDN TA G ++R+G+ +A+ RY Sbjct: 17 RKDLDFTEQLWDVLCLCNTQEDVEGVFEETFQALQNGLIFPVIGRDNNTALGMYLREGLRIAQATRY 83 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5475.13740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5475.13740.1 >prot_L-elsbetiae_contig5475.13740.1 ID=prot_L-elsbetiae_contig5475.13740.1|Name=mRNA_L-elsbetiae_contig5475.13740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=699bp MASESDVIILSCLTKPPATAAATAAVRSALQRVIVRTPSATICNSGPGGLback to top mRNA from alignment at L-elsbetiae_contig5475:9782..12028- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5475.13740.1 ID=mRNA_L-elsbetiae_contig5475.13740.1|Name=mRNA_L-elsbetiae_contig5475.13740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2247bp|location=Sequence derived from alignment at L-elsbetiae_contig5475:9782..12028- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5475:9782..12028- >mRNA_L-elsbetiae_contig5475.13740.1 ID=mRNA_L-elsbetiae_contig5475.13740.1|Name=mRNA_L-elsbetiae_contig5475.13740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4194bp|location=Sequence derived from alignment at L-elsbetiae_contig5475:9782..12028- (Laminarionema elsbetiae ELsaHSoW15)back to top |