mRNA_L-elsbetiae_contig5470.13732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.930e-60 Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1 Query: 1 ITAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 339 + AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA Sbjct: 1 MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 113
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.310e-43 Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1 Query: 7 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 270 AVGVPIKLLHEGEGH +T+EMKNGEIYRG L EAEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPVFK VQKM Sbjct: 6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKM 93
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.660e-38 Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 1 Query: 10 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 +GVPI++LHEGEGH ++VE++NGEIYRG L EAEDTMNCF+ VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P F VQ MKK Sbjct: 6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKK 94
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK) HSP 1 Score: 137 bits (344), Expect = 5.540e-37 Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1 Query: 10 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQ 264 +GVP+KLLHE EGH VT E+KNGEIYRG L+EAEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPVFK VQ Sbjct: 6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQ 90
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: K3WSP0_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD) HSP 1 Score: 135 bits (341), Expect = 1.650e-36 Identity = 61/89 (68.54%), Postives = 77/89 (86.52%), Query Frame = 1 Query: 10 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 VGVPI LLHEGEG VT+E+KNGEIYRGHL E+ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+F VQ +KK Sbjct: 5 VGVPIALLHEGEGRNVTIELKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFSKVQALKK 93
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: F0Y2Z6_AURAN (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN) HSP 1 Score: 133 bits (334), Expect = 1.780e-35 Identity = 63/95 (66.32%), Postives = 81/95 (85.26%), Query Frame = 1 Query: 7 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIK-----LVVLPDVLKNAPVFKPVQKMKK 276 AVGVPIKLLHEGEGH VT+E+KNGEIYRGHL+E+E+TMNC +T V +T RDGRV+KLE VY+RGS IK ++LPD+LK++PVF+ V+++KK Sbjct: 7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKK 101
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.920e-35 Identity = 58/89 (65.17%), Postives = 78/89 (87.64%), Query Frame = 1 Query: 10 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 VGVP+ LLHEGEGH +T+E+KNGE+YRGHL E+ED+MNC + VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK Sbjct: 5 VGVPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKK 93
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A5D6XZW3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.390e-35 Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1 Query: 7 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 +VGVPI LLHEGEG VTVE+KNGEIYRGHL E+ED+MNC M V +T RDG+ KLEQVY+RGSHIKLV+LPDVLKN+P+ VQ +KK Sbjct: 5 SVGVPIALLHEGEGRSVTVELKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPLLAKVQALKK 94
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: T0QL39_SAPDV (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV) HSP 1 Score: 132 bits (332), Expect = 3.540e-35 Identity = 57/90 (63.33%), Postives = 79/90 (87.78%), Query Frame = 1 Query: 7 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC + VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK +Q +KK Sbjct: 4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQALKK 93
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A1V9ZC26_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC26_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.540e-35 Identity = 58/90 (64.44%), Postives = 79/90 (87.78%), Query Frame = 1 Query: 7 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 276 ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC + VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK Sbjct: 4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKK 93 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5470.13732.1 >prot_L-elsbetiae_contig5470.13732.1 ID=prot_L-elsbetiae_contig5470.13732.1|Name=mRNA_L-elsbetiae_contig5470.13732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVback to top mRNA from alignment at L-elsbetiae_contig5470:6073..7664- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5470.13732.1 ID=mRNA_L-elsbetiae_contig5470.13732.1|Name=mRNA_L-elsbetiae_contig5470.13732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1592bp|location=Sequence derived from alignment at L-elsbetiae_contig5470:6073..7664- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5470:6073..7664- >mRNA_L-elsbetiae_contig5470.13732.1 ID=mRNA_L-elsbetiae_contig5470.13732.1|Name=mRNA_L-elsbetiae_contig5470.13732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig5470:6073..7664- (Laminarionema elsbetiae ELsaHSoW15)back to top |