mRNA_L-elsbetiae_contig547.13728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig547.13728.1
Unique NamemRNA_L-elsbetiae_contig547.13728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig547.13728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig547contigL-elsbetiae_contig547:6635..7171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size521
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.5186026-CDS-L-elsbetiae_contig547:6634..70071622816573.5186026-CDS-L-elsbetiae_contig547:6634..7007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 6635..7007 +
1691683656.8740904-CDS-L-elsbetiae_contig547:6634..70071691683656.8740904-CDS-L-elsbetiae_contig547:6634..7007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 6635..7007 +
1622816573.5320354-CDS-L-elsbetiae_contig547:7023..71691622816573.5320354-CDS-L-elsbetiae_contig547:7023..7169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 7024..7169 +
1691683656.8845518-CDS-L-elsbetiae_contig547:7023..71691691683656.8845518-CDS-L-elsbetiae_contig547:7023..7169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 7024..7169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig547.13728.1prot_L-elsbetiae_contig547.13728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig547 6635..7169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig547.13728.1

>prot_L-elsbetiae_contig547.13728.1 ID=prot_L-elsbetiae_contig547.13728.1|Name=mRNA_L-elsbetiae_contig547.13728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
AAAAFAGAGKRKNSKSGADKTVAEAAAVRHSVGPATAANNVNDSAKPLPP
PDSLAEVFQPELDNTLLRALLYGHSAAAESNQKGTVGGRGGPAGVAKTRR
QPEYRGPHAPPGEGQPRSAGSGGGAAAVAAGLVPMINPPVQKERVSCDAA
WMTRIRSTQRILTDERCSWVSEG
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mRNA from alignment at L-elsbetiae_contig547:6635..7171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig547.13728.1 ID=mRNA_L-elsbetiae_contig547.13728.1|Name=mRNA_L-elsbetiae_contig547.13728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=537bp|location=Sequence derived from alignment at L-elsbetiae_contig547:6635..7171+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGCCTTCGCCGGCGCCGGCAAGCGCAAAAACTCGAAAAGCGG
GGCAGATAAGACGGTGGCGGAGGCAGCCGCAGTGCGACACAGCGTGGGCC
CGGCGACGGCGGCAAATAATGTTAACGACTCGGCGAAGCCGCTGCCGCCC
CCCGATTCTCTGGCTGAAGTCTTCCAACCCGAGCTTGACAACACGCTCCT
GCGGGCACTCCTGTACGGCCACAGCGCCGCTGCCGAATCGAACCAGAAGG
GGACGGTGGGCGGAAGAGGAGGGCCAGCAGGGGTTGCCAAAACCAGACGT
CAGCCGGAATACCGTGGACCCCATGCACCGCCGGGAGAGGGTCAACCACG
CTCGGCTGGCAGCGGTGGCGGCGGCGGCGGTGGCGGCAGCGGCGGCGGTG
GCGGCGGGACTTGTGCCAATGATCAACCCCCCCGTACAAAAGGAAAGGGT
AAGCTGCGACGCAGCGTGGATGACGAGGATCCGGAGTACGCAGAGGATAC
TGACAGATGAAAGGTGCTCGTGGGTCAGCGAGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig547:6635..7171+

>mRNA_L-elsbetiae_contig547.13728.1 ID=mRNA_L-elsbetiae_contig547.13728.1|Name=mRNA_L-elsbetiae_contig547.13728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig547:6635..7171+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGCCTTCGCCGGCGCCGGCAAGCGCAAAAACTCGAAAAGCGG
GGCAGATAAGACGGTGGCGGAGGCAGCCGCAGTGCGACACAGCGTGGGCC
CGGCGACGGCGGCAAATAATGTTAACGACTCGGCGAAGCCGCTGCCGCCC
CCCGATTCTCTGGCTGAAGTCTTCCAACCCGAGCTTGACAACACGCTCCT
GCGGGCACTCCTGTACGGCCACAGCGCCGCTGCCGAATCGAACCAGAAGG
GGACGGTGGGCGGAAGAGGAGGGCCAGCAGGGGTTGCCAAAACCAGACGT
CAGCCGGAATACCGTGGACCCCATGCACCGCCGGGAGAGGGTCAACCACG
CTCGGCTGGCAGCGGTGGCGGCGGCTGCTGCTGCCTTCGCCGGCGCCGGC
AAGCGCAAAAACTCGAAAAGCGGGGCAGATAAGACGGTGGCGGAGGCAGC
CGCAGTGCGACACAGCGTGGGCCCGGCGACGGCGGCAAATAATGTTAACG
ACTCGGCGAAGCCGCTGCCGCCCCCCGATTCTCTGGCTGAAGTCTTCCAA
CCCGAGCTTGACAACACGCTCCTGCGGGCACTCCTGTACGGCCACAGCGC
CGCTGCCGAATCGAACCAGAAGGGGACGGTGGGCGGAAGAGGAGGGCCAG
CAGGGGTTGCCAAAACCAGACGTCAGCCGGAATACCGTGGACCCCATGCA
CCGCCGGGAGAGGGTCAACCACGCTCGGCTGGCAGCGGTGGCGGCGCGGC
GGCGGTGGCGGCGGGACTTGTGCCAATGATCAACCCCCCCGTACAAAAGG
AAAGGGTAAGCTGCGACGCAGCGTGGATGACGAGGATCCGGAGTACGCAG
AGGATACTGACAGATGAAAGGTGCTCGTGGGTCAGCGAGGGGCGGCGGCG
GTGGCGGCGGGACTTGTGCCAATGATCAACCCCCCCGTACAAAAGGAAAG
GGTAAGCTGCGACGCAGCGTGGATGACGAGGATCCGGAGTACGCAGAGGA
TACTGACAGATGAAAGGTGCTCGTGGGTCAGCGAGGGG
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