mRNA_L-elsbetiae_contig5469.13726.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5469.13726.1
Unique NamemRNA_L-elsbetiae_contig5469.13726.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5469.13726.1 vs. uniprot
Match: D7FHP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.570e-45
Identity = 111/236 (47.03%), Postives = 137/236 (58.05%), Query Frame = 1 
Query:    1 QDRDNLFEDMISGPGIAATKFPRRGRPREIVLTLVLPAQGGGGVTRMDLSALGGASXXXXXXXXXXXXXXXXALQHPSASPSGRTAFGWLGGAATMARATSSLFEGTDCCRQSVGTSPTASSSLRSARALQHEPHRNGHQGGPRPLRAVLDLQLVWNRQRGGKGSLRVGEVVDALAGMDSQVLKPVCEEARKRAASRGGPQGEGAGGE----EDTFVSLLTSRRTLDLKFSTVPTR 696
            QDR+ LFE+M+SGPGI ATKFPRRG+PR +VLTLV P                   XXXXX           ++   S   S  ++F    G       TSS         + + + P   S  RS R+  H+        GP  L+ VLDL+L WNRQRG KGSLR+GEV++A+AG+DSQ+L+PVCEE R+RAAS G  +  G GGE    EDTFVSL T+RRTLDLKFSTVP R
Sbjct:   19 QDREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKP---SYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESR-VGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIR 250
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BLAST of mRNA_L-elsbetiae_contig5469.13726.1 vs. uniprot
Match: A0A6H5KDH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.330e-12
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:  532 MDSQVLKPVCEEARKRAASRGGPQ-GEG-AGGEEDTFVSLLTSRRTLDLKFSTVPTR 696
            M  Q+L+PVCEE R+RAAS G  + GEG AG EEDTFVSL T+RRTLDLKFSTVP R
Sbjct:    1 MPCQILRPVCEELRRRAASVGESRAGEGGAGEEEDTFVSLRTNRRTLDLKFSTVPIR 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5469.13726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHP0_ECTSI5.570e-4547.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDH9_9PHAE1.330e-1271.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5469contigL-elsbetiae_contig5469:7102..11413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size696
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5469.13726.1prot_L-elsbetiae_contig5469.13726.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5469 7129..11413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.3521464-UTR-L-elsbetiae_contig5469:7101..71281622816573.3521464-UTR-L-elsbetiae_contig5469:7101..7128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5469 7102..7128 +
1691683656.7714732-UTR-L-elsbetiae_contig5469:7101..71281691683656.7714732-UTR-L-elsbetiae_contig5469:7101..7128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5469 7102..7128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.3662007-CDS-L-elsbetiae_contig5469:7128..74481622816573.3662007-CDS-L-elsbetiae_contig5469:7128..7448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 7129..7448 +
1691683656.7871602-CDS-L-elsbetiae_contig5469:7128..74481691683656.7871602-CDS-L-elsbetiae_contig5469:7128..7448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 7129..7448 +
1622816573.3819313-CDS-L-elsbetiae_contig5469:9326..95221622816573.3819313-CDS-L-elsbetiae_contig5469:9326..9522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 9327..9522 +
1691683656.798445-CDS-L-elsbetiae_contig5469:9326..95221691683656.798445-CDS-L-elsbetiae_contig5469:9326..9522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 9327..9522 +
1622816573.394935-CDS-L-elsbetiae_contig5469:11260..114131622816573.394935-CDS-L-elsbetiae_contig5469:11260..11413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 11261..11413 +
1691683656.8076046-CDS-L-elsbetiae_contig5469:11260..114131691683656.8076046-CDS-L-elsbetiae_contig5469:11260..11413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5469 11261..11413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5469.13726.1

>prot_L-elsbetiae_contig5469.13726.1 ID=prot_L-elsbetiae_contig5469.13726.1|Name=mRNA_L-elsbetiae_contig5469.13726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MISGPGIAATKFPRRGRPREIVLTLVLPAQGGGGVTRMDLSALGGASAGG
VGGGGGDTAAAAAALQHPSASPSGRTAFGWLGGAATMARATSSLFEGTDC
CRQSVGTSPTASSSLRSARALQHEPHRNGHQGGPRPLRAVLDLQLVWNRQ
RGGKGSLRVGEVVDALAGMDSQVLKPVCEEARKRAASRGGPQGEGAGGEE
DTFVSLLTSRRTLDLKFSTVPTR
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mRNA from alignment at L-elsbetiae_contig5469:7102..11413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5469.13726.1 ID=mRNA_L-elsbetiae_contig5469.13726.1|Name=mRNA_L-elsbetiae_contig5469.13726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4312bp|location=Sequence derived from alignment at L-elsbetiae_contig5469:7102..11413+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACCGGGATAACCTCTTCGAGGACATGATTTCCGGTCCCGGCATAGC
CGCCACGAAGTTCCCTCGGAGGGGCCGGCCGCGTGAGATCGTCCTAACGC
TGGTGCTGCCGGCGCAGGGGGGAGGGGGGGTGACGCGGATGGACTTGTCG
GCGCTGGGGGGGGCGTCAGCTGGCGGTGTCGGTGGGGGCGGCGGCGACAC
GGCGGCGGCGGCGGCGGCGTTGCAGCACCCCTCGGCTTCTCCGTCCGGGC
GGACCGCGTTTGGGTGGCTCGGGGGCGCCGCGACGATGGCCCGGGCTACC
TCCAGCTTGTTCGAAGGTACTGACTGCTGCCGCCAATCAGTAGGCACGTA
GGCACACACACACACAGTGCTTGTTACGGATTTTGTGCGAGTGAGTACAT
CTTGGACGGGAATGCCTACGGCAGTCCCTCTGGAACGACTTTTTCGCAGA
CTGGACGTAGACTGCTGACATTTCGTATGTGTGTGTGTGTGTGTCCTTCC
CATTTAATTTGGCGACAGTCCCCCCAAGTGGAGACAATGTACTACACCTT
GCGGTGTACTTAGAGGTACTACACTTTGCAGTGCATTTGTATGTACAACT
AGAACCAACCGAGGTCACACAGGAGGAGGTGATATATATATACATTAATT
AAAAATACCACCACGCGCTGATCGTGCTATGGAGTTGTAGTATGCATGCA
CATACTTCTACATTTTTTTTTTGTCTTCATGTGTGAAACCGTTCCGATCT
CTCCATCCAGTACCTCTCGATGTCCGTACGAATCCAACACTTGATGCAGT
CAATTCCCGTGGTCACAGGCTAACTTATACCCAAGAAAAGGTACACGAAA
AATAAAATGGACCCGAAGGGCCAGCAAAGCAATGATAAAACAGATATCGA
ATCTGGAGCCCTTCGCTCCCCTCTACACGCTATGTGAGGGAAAACAAAAC
TGGAACAGCCAACACCACTATCTTGGTACCAGCTGCTTGGTACCCCAACA
AAGCCGGGGGGATCCGCGCCGGATTCTCGCCGGCCAGGCCCGCACAGGTC
TACATACCGTAATGATGCGAAGGTTCGCACCCCCGTGTTAGCATTTTTCT
AAAGCGTACTTCTCCACAACCAAGAGGGTACCACTGCCGAAAAGGGTGGT
TTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGCATCAATTAGTGTTC
GCACCCTCTTGGTTGTGGAGAAATACGCTTTAGAAAAATGCTGACACGGA
GGTGCGAACCTTCGCATCATTACGGTAGTCCTCCATGCCAGTCCCCGAAA
AGGGCGGCGGCGTTGGAAAAGTATGTCATTAACAGCTGTCCGAAAACGTG
CCCTTCTTTGGCATTAGAATCATAATAGATACCATACGTTGCGGAGTAAC
CGGGCTTTGAAAACCGGTCCAGGGGGTGTGTTATCTTTTGTCGTATAAGG
CGGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTC
CCCCCAAGTGTAGACGTGTACTACACCTTGCGGTGTACTTAGAGGTACTA
CACTTTGCAGTGCAATTGTTAGTACAACTAGAACCAACCGGGGTCACACA
GGAGGGGGTGAACACTGGAGCTTTTTCTTCTTTTTTATTTCCTTTTTTTG
CCCCACCTTCCTCCTGCGGTTCTTACCTTCATTTTTATCGCGAGAAGGGT
TCAGCTGTCCCTTGCCCTCGTCAACGTGATTACGTCGAACGGCGGTACAC
ACGTTTTTCCCGACCGGCTCGACTCTTTTACCTCAACAAGGGGGATGACC
ACATATTTCTCATTCTAAATTAAAGTGAAAAATTCCGGTTGCTTGAGAAA
GCGCGTGCGAGCCCCGTAGAAATTTCTTCGAATAATAAAGAGCGGGGAGA
CAAAATACATCATGTACATTATAGACCTGTTACATATATGCGTAAATGCA
CACGTTTTTTTCCCGACCGGCCCGGCTCTTCTACCTCAACAGGGGGGCGA
CCTCATAATTCTCATTCCAAATTAAAGTGAAAAATTCCGGTTGCTTGAGA
AAGCGCGTGCGAGCCCTGTAGAAGTTTCTTCGAATAATAAAGAGCGGGGA
GACAAAAATACATCATGTACATTATAGACCTGTTACATATACATATGCGT
TTTGTAAATGCACACGTTTTTTTTTCCCGACCGGCCCGGCTCTTCTACCT
CAACAGGGGGCGACACCGCGGGCAGCAGTCCCACCGCGTCTTCTTCGCTC
CGGTCAGCCCGGGCCCTTCAGCACGAACCGCACCGCAACGGGCACCAAGG
CGGCCCGAGACCGTTGCGAGCCGTGCTCGACCTGCAGCTGGTTTGGAACC
GGCAGCGGGGCGGGAAAGGCTCCCTCAGGGTGGGAGAGGTCGTCGACGCC
CTAGCGGGAATGGACTCTCAGGTGAGCCGCCGCGCATGTGTGTGTGTGGC
CCCGGTTGGGTCGTCTAGCTGGTCGTAGTGGAAGAGGGGGGCCAGTGGGG
CAGACGACGAATAAGCTAATACTGGGAGGGAGAAACAAAAAAGGATGCAT
TTTTGTTGTATGTTGTTGTCGTCGTTGTTGTTGTTGTTGTTGCTGTCGTT
GTTGTTGTTGTTGAAGGAGGGGGGCCAGTAGGGCAGACGACGAATAAGCC
AATGCTGGGAGGGAGAAAAAAAAAAGTATGCATTTTTGTTGTATGTTGTC
GTTGTTGCTGTTGTTGTTGGTGCTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGCTGCTGCTGTTGTTGTGGTTGTTGTTTCTCTCAATACATAGCTGTGT
CCCAAGGATTTTCTCTCAATACATAGCTGTGTCCCAAGGATACCGGCCCG
TGGCCACAGGAGTGCTGGAGCCATCAGAAGATCCGAAAGGACACACGTAC
GTACACCGGACAACGGTACACACAGGCCGACGAGGTACACCTTAACACCT
AGTTTCCGGCAAAAACAATTCCCGTGTGTCCTCCGCCCTCACCGGTGAGT
CCGAGCGTATCGAAGACGGACCGAGTAGTATTTGTCCTACGCTTGGGGGG
GCAATTCGAGAACGGGGGGCTGGTGGCCCTATTTTTTGTGACCACGGGCC
CCCATGGATGTTTTTGGGTTATTTAAAGAGCTAATGTGAGGAACCATTAA
CATACGAATGAACCCTACTCGCGATGAAAACATCTCAGGCAGGCACCGCA
GGAGGGGATCCACCCCCCCCCCCTCCTGTGTGACTCCGGGTGGGTTGTCT
AGCTAGTCGTAGTTAGAGCAGGGGGCCCAGTGGTTCAGACGACGAATATG
ACAATAATGGGAGAAAAAGAAAACAAGATGTTCATTTTGTACAACAGAGA
GGACTGCTTCCCCACACCACGTGCTGGTATGTGTGTCTATCTTTGCAGGC
GGCGGTCGCGTCCGATCTTGTGTTCGGCTTAAGAGACGGAAAGACGAACA
GACGGCGAGCATATTATGTATTTACTGACTACTGTGGGAGTAAGGAGTGG
GGTGGATGGCATGATATCCCCACAAATCCCTGTTCTCCTCGTTTTTGTGC
TTTATTTCCATGGTTTTTAACTTTACCGTATACGACACAAGATAACACAC
CCCCTGGACCGATTTTCAAGGCTCGGTTACATACTCCGCAACGAGTATGA
TTCTAATACCAAACGACACGTTTTCGGACAGCTCTTGATGAGATATTCCC
AATGCCGCCGCCCTTTTCGGGGACTGATGACACTCTTCTCGCTGTGGAGT
ACTTGAGCTTCGAAAATCGGTCCAGGGGGTGTGTTATCTTGTGTCGTATA
CGGTATACGAGGTTTCTGCCGAAACTGTTTTCACAAAAAGACGGCTGGCT
TGGCCCGCTTTGTTTCGTTTCAAAATAAAACAAAGAATCAAAGATGGAAC
CTAACCCATACTAGAGCAAATACTCGATATGGGGTTCAAACGGTATTCCT
ACAGAGACGTAATATTTGTCGTTTCGTTTTCCGCCACTCCCTCGTGGAGC
TGCTGTCGATCCCCGTGGTTATGCATACACTGAAAAATGTGTGTGAAGAC
AACAACAACAGCAACACAACACAAACTTGACGTGGCTCGGACGCGGCTCG
ATGCGCCAGGTGCTGAAGCCGGTTTGCGAGGAGGCACGGAAGCGTGCCGC
AAGCCGGGGGGGTCCTCAGGGCGAGGGGGCGGGCGGAGAGGAGGACACGT
TCGTCTCGCTTCTCACCAGCCGGAGGACGCTGGACCTTAAGTTCTCGACG
GTGCCCACCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5469:7102..11413+

>mRNA_L-elsbetiae_contig5469.13726.1 ID=mRNA_L-elsbetiae_contig5469.13726.1|Name=mRNA_L-elsbetiae_contig5469.13726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig5469:7102..11413+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCCGGTCCCGGCATAGCCGCCACGAAGTTCCCTCGGAGGGGCCG
GCCGCGTGAGATCGTCCTAACGCTGGTGCTGCCGGCGCAGGGGGGAGGGG
GGGTGACGCGGATGGACTTGTCGGCGCTGGGGGGGGCGTCAGCTGGCGGT
GTCGGTGGGGGCGGCGGCGACACGGCGGCGGCGGCGGCGGCGTTGCAGCA
CCCCTCGGCTTCTCCGTCCGGGCGGACCGCGTTTGGGTGGCTCGGGGGCG
CCGCGACGATGGCCCGGGCTACCTCCAGCTTGTTCGAAGGTACTGACTGC
TGCCGCCAATCAGTAGGCACATGATTTCCGGTCCCGGCATAGCCGCCACG
AAGTTCCCTCGGAGGGGCCGGCCGCGTGAGATCGTCCTAACGCTGGTGCT
GCCGGCGCAGGGGGGAGGGGGGGTGACGCGGATGGACTTGTCGGCGCTGG
GGGGGGCGTCAGCTGGCGGTGTCGGTGGGGGCGGCGGCGACACGGCGGCG
GCGGCGGCGGCGTTGCAGCACCCCTCGGCTTCTCCGTCCGGGCGGACCGC
GTTTGGGTGGCTCGGGGGCGCCGCGACGATGGCCCGGGCTACCTCCAGCT
TGTTCGAAGGTACTGACTGCTGCCGCCAATCAGTAGGCACCAGTCCCACC
GCGTCTTCTTCGCTCCGGTCAGCCCGGGCCCTTCAGCACGAACCGCACCG
CAACGGGCACCAAGGCGGCCCGAGACCGTTGCGAGCCGTGCTCGACCTGC
AGCTGGTTTGGAACCGGCAGCGGGGCGGGAAAGGCTCCCTCAGGGTGGGA
GAGGTCGTCGACGCCCTAGCGGGAATGGACTCTCAGCAGTCCCACCGCGT
CTTCTTCGCTCCGGTCAGCCCGGGCCCTTCAGCACGAACCGCACCGCAAC
GGGCACCAAGGCGGCCCGAGACCGTTGCGAGCCGTGCTCGACCTGCAGCT
GGTTTGGAACCGGCAGCGGGGCGGGAAAGGCTCCCTCAGGGTGGGAGAGG
TCGTCGACGCCCTAGCGGGAATGGACTCTCAGGTGCTGAAGCCGGTTTGC
GAGGAGGCACGGAAGCGTGCCGCAAGCCGGGGGGGTCCTCAGGGCGAGGG
GGCGGGCGGAGAGGAGGACACGTTCGTCTCGCTTCTCACCAGCCGGAGGA
CGCTGGACCTTAAGTTCTCGACGGTGCCCACCAGGGTGCTGAAGCCGGTT
TGCGAGGAGGCACGGAAGCGTGCCGCAAGCCGGGGGGGTCCTCAGGGCGA
GGGGGCGGGCGGAGAGGAGGACACGTTCGTCTCGCTTCTCACCAGCCGGA
GGACGCTGGACCTTAAGTTCTCGACGGTGCCCACCAGG
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